LOC118938849 (LOC106609835)


Basic Information

Item Value
gene id LOC118938849
gene name LOC106609835
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 73172193 ~ 73254659 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945330.1
TTCAGCTGTTTTAGTTTGAGTTCCACACAAGGCACAGTTTTTGCTTGGCCATCAGGGAAGGCACAGGGAAGGCACAGGGAAGGTACAGGGAAGGCACAGGGAAGACACAGGAAAGGCACAGGGAAGACACAGGGAAGGCACAGGGAAGGCACAGGGAAGGCACAGGGAAGGCACAGGGAAGACACAGGGAAggtacacagacagagagagataggaaaaTAGGGATAAAAGAGCTTAAATTGGTAGATTTCTTTGCCACAAGCACAGGGCCCTTAAAGATCTGGTAGCTGTCTTGACTTCCATGATGTCAACAACAAGAGGACGCGCAGAACGGCAGggtggtAACACCAGTCTGAATATGAACCACTATGCCACTAAGAAGACGGTGGCAGGGAGCATGTTAGACGTGGCCCTGCTGATGGCCAACGCTGCCCAGCTGAAGGCCGTCCTGGAGCAGGGGCCAGACTTCAGGTACTACGTCACCGTCCTGGTCCTCATCGGGTCGTCGCTGCTCTTCCAGGTGCTGGCTGGGGTGCTGTTTGTCGCCATGGCACGTAAGGACCTGAACAACGTGGCCAACCAGAGGAAGCTGGACATCATGAACAACGTGGCCACCGGCCTCGTCTTCATCACCGCCATCATCAACATCTTCATCACCGCATTTGGAGTGCAGAAGACTGGCCTGTACCCCAAAACCTAGGCTGAAGACTGGCCTGTACCCCACAACCTAGACAGTAGACTGACCTGTACCCTAAAACCTAGACAGAAGACTTGCCTGTACCCCAAAACCTAGACAATAGACTGGCCTGTACCCCAAAACCTAGAATGAAGACTGGCCTGTACCCCAAAACCTAGACAGAAGACTGGCCTGTACCCCAAAACCTAGACTGAAGACTGGCCTGTACCCCAACACCTAGACAGTAGACTGGCCTGTACCCCAAAACCTAGACAGTAGACTGGCCTGTACCCCAAAACCTAGACAGTAGACTGGCCTGTACCCCAAAACCTAGACAGTAGACTGACCTGTACCCCACAACCTAGACAGTAGACTGACCTGTACCCCAAAACCTAGACAGTAGACTGACCTGTACCCCAACACCTAGGCTGAAGACTGACCTGTACCCCAAAACCTAGACTGAAGACGGATCTGTACCCCAAATCCTAGACAGTAAACTGACCTGTACCCCAAAACCTAGACAGTAGACTGATCTGTACCCCAAAACCTAGACAGTAGACTGATCTGTACCCCAAAACCTAGACAGTAGACTGATCTGTACCCCAAAACCTAGACAGTAGACTGACCTGTACCCCAAAACCTAGACAGAAGACTGGCCTGTACCCCACAACCTAGACAGAAGACTGGCCTGTACCCTAAAACCTAGACTGAAGACTGACCTGTACCCCACAACCTAGACAGTAGACTGACCTGTGCCCTAAAACCTAGACTGAAGACTGACCTGTACCCCACAACCTAGACAGTAGACTGACCTGTACCCCACAACCTAGACAGTAGACTGACCTGTACCCTAAAACCTAGACAGTAGACTGACCTGTACCCCAAAACCTAGACAGAAGACTGACCTGTACCCCACAACCTAGACAGTAGACTGACCTGTACCCCAAAACCTAGACAGAAGACTGACCTGTACCCCACAACCTAGACAGTAGACTGACCTGTACCCCAAAACCTAGACAGAAGACTGACCTGTACCCCACAACCTAGACAGTAGACTGACCTGTACCCCAACACCTAGACAGTAGACTGACCTGTACCCCACAACCTAGACAGTAGACTGACCTGTACCCCACAACCTAGACAGTAGACTGACCTGTACCCCAACACCTAGACAGTAGACTGACCTGTACCCCACAACCTAGACAGTAGACTGACCTGTACCCCACAACCTAGACAGTAGACTGACCTGTAC
>TU1512713
CATTTCTTAAAAAGGCTCTGCCAGGTTTTCAGCTGTTTTAGTTTGAGTTCCACACAAGGCACAGTTTTTGCTTGGCCATCAGGGAAGGCACAGGGAAGGCACAGGGAAGGCACAGGGAAGACACAGGGAAGGCACAGGGAAGGCACAGGGAAGGCACAGGGAAGGCACAGGGAAGACACAGGGAAggtacacagacagagagagataggaaaaTAGGGATAAAAGAGCTTAAATTGGTAGATTTCTTTGCCACAAGCACAGGGCCCTTAAAGATCTGGTAGCTGTCTTGACTTCCATGATGTCAACAACAAGAGGACGCGCAGAACGGCAGggtggtAACACCAGTCTGAATATGAACCACTATGCCACTAAGAAGACGGTGGCAGGGAGCATGTTAGACGTGGCCCTGCTGATGGCCAACGCTGCCCAGCTGAAGGCCGTCCTGGAGCAGGGGCCAGACTTCAGGTACTACGTCACCGTCCTGGTCCTCATCGGGTCGTCGCTGCTCTTCCAGGTGCTGGCTGGGGTGCTGTTTGTCGCCATGGCACGTAAGGACCTGAACAACGTGGCCAACCAGAGGAAGCTGGACATCATGAACAACGTGGCCACCGGCCTCGTCTTCATCACCGCCATCATCAACATCTTCATCACCGCATTTGGAGTGCAGAAGACTGGCCTGTACCCCAAAACCTAGGCTGAAGACTGGCCTGTACCCCACAACCTAGACAGTAGACTGACCTGTACCCTAAAACCTAGACAGAAGACTTGCCTGTACCCCAAAACCTAGACAATAGACTGGCCTGTACCCCAAAACCTAGAATGAAGACTGGCCTGTACCCCAAAACCTAGACAGAAGACTGGCCTGTACCCCAAAACCTAGACTGAAGACTGGCCTGTACCCCAACACCTAGACAGTAGACTGGCCTGTACCCCAAAACCTAGACAGTAGACTGGCCTGTACCCCAAAACCTAGACAGTAGACTGGCCTGTACCCCAAAACCTAGACAGTAGACTGACCTGTACCCCACAACCTAGACAGTAGACTGACCTGTACCCCAAAACCTAGACAGTAGACTGACCTGTACCCCAACACCTAGGCTGAAGACTGACCTGTACCCCAAAACCTAGACTGAAGACGGATCTGTACCCCAAATCCTAGACAGTAAACTGACCTGTACCCCAAAACCTAGACAGTAGACTGATCTGTACCCCAAAACCTAGACAGTAGACTGATCTGTACCCCAAAACCTAGACAGTAGACTGATCTGTACCCCAAAACCTAGACAGTAGACTGACCTGTACCCCAAAACCTAGACAGAAGACTGGCCTGTACCCCACAACCTAGACAGAAGACTGGCCTGTACCCTAAAACCTAGACTGAAGACTGACCTGTACCCCACAACCTAGACAGTAGACTGACCTGTGCCCTAAAACCTAGACTGAAGACTGACCTGTACCCCACAACCTAGACAGTAGACTGACCTGTACCCCACAACCTAGACAGTAGACTGACCTGTACCCTAAAACCTAGACAGTAGACTGACCTGTACCCCAAAACCTAGACAGAAGACTGACCTGTACCCCACAACCTAGACAGTAGACTGACCTGTACCCCAAAACCTAGACAGAAGACTGACCTGTACCCCACAACCTAGACAGTAGACTGACCTGTACCCCAAAACCTAGACAGAAGACTGACCTGTACCCCACAACCTAGACAGTAGACTGACCTGTACCCCAACACCTAGACAGTAGACTGACCTGTACCCCACAACCTAGACAGTAGACTGACCTGTACCCCACAACCTAGACAGTAGACTGACCTGTACCCCAACACCTAGACAGTAGACTGACCTGTACCCCACAACCTAGACAGTAGACTGACCTGTACCCCACAACCTAGACAGTAGACTGACCTGTACCCCAAAACCTAGACAGTAGACTGACCTGTACCCCACAACCTAGACAGTAGACTGACCTGTACCCCACAACCTAGACAGTAGACTGACCTGTACCCCAAAACCTAGACAGTAGACTGACCTGTACCCCAAAACCTAGACAGTAGACTGACCTGTGCCCTAAAACCTAGACTGAAGACTGACCTGTACCCCACAACCTAGACAGTAGACTGACCTGTACCCTAAAACCTAGACAGAAGACTGACCTGTACCCTAAAACCTAGACAGTAGACTGACCTGTACCCTAAAACCTAGACAGTAGACTGACCTGTACCCTAAAACCTAGAGTGATATACTTCAGCGATATATCTTTCAAAGCGCGGCAATACGGGTTTACTATTGTAACTTTTTTTTATCAGAAGAGATTTGTAAAAGAAAGATATTAATCATTTAAATGTCAAAAAGTAGAATTGTCTTATTCTAATGTGTATGGCTCAGAAATCAAATTAAAGACAAGTGTTTGGGCTACAGATTAGTCTCTCCAGACAAACGGGTTGCCTCCCACAATTTAACAATGTTCAAGCATGTCCTTGGTCTGGGATTTCCAAGAATGGCTACAGACCATAGGGTCTTCAGATAATATAAGGGGAAACAGTGTCTACTAGTGGTCTTTATTTTACTAATAAAAGAATGATACTCACTGTGTCCAAAGTGTGTCTCTAATGCAATAAACCCCATAAAACAA

Function

NR:

description
PREDICTED: ninjurin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945330.1 False 1928 mRNA 0.52 4 73172220 73253907
TU1512713 True 2643 TUCP 0.48 6 73172193 73254659

Neighbor

gene id symbol gene type direction distance location
LOC110490361 LOC106609821 coding upstream 322045 72742193 ~ 72850175 (+)
LOC110499728 NA coding upstream 342700 72826513 ~ 72829520 (+)
LOC110515111 LOC106561326 coding upstream 437750 72551117 ~ 72734470 (+)
LOC110531894 LOC106598741 coding upstream 690779 72416050 ~ 72481441 (+)
LOC110518729 LOC106599346 coding upstream 767582 72381871 ~ 72404638 (+)
LOC110517131 LOC105024897 coding downstream 4616 73258523 ~ 73536948 (+)
LOC118936425 lmo3 coding downstream 423177 73677084 ~ 73803344 (+)
LOC118938850 NA coding downstream 440932 73694833 ~ 73698637 (+)
LOC118938852 NA coding downstream 773183 74027090 ~ 74132032 (+)
LOC118938853 NA coding downstream 880313 74134220 ~ 74140504 (+)
G1324916 NA non-coding upstream 3160 73168847 ~ 73169060 (+)
G1324913 NA non-coding upstream 6094 73164601 ~ 73166126 (+)
G1324911 NA non-coding upstream 16678 73155221 ~ 73155542 (+)
G1324907 NA non-coding upstream 21214 73150784 ~ 73151006 (+)
G1324288 NA non-coding upstream 174771 72996184 ~ 72997449 (+)
G1324989 NA non-coding downstream 1078 73254985 ~ 73255211 (+)
G1324991 NA non-coding downstream 2589 73256496 ~ 73257850 (+)
G1325004 NA non-coding downstream 17338 73271245 ~ 73272453 (+)
G1325006 NA non-coding downstream 24567 73278474 ~ 73278794 (+)
G1325008 NA non-coding downstream 35023 73288930 ~ 73289532 (+)
G1324240 NA other upstream 266131 72905710 ~ 72906089 (+)
G1324195 NA other upstream 306411 72860820 ~ 72865809 (+)
G1324156 LOC106576365 other upstream 316198 72853566 ~ 72856022 (+)
G1325337 NA other downstream 602437 73856344 ~ 73856674 (+)
G1325481 NA other downstream 984432 74238339 ~ 74240169 (+)
LOC110517153 cpm other downstream 1473892 74657149 ~ 74743482 (+)
G1326191 NA other downstream 1859782 75113689 ~ 75114514 (+)

Expression


Co-expression Network