LOC118938934 (LOC106594503)


Basic Information

Item Value
gene id LOC118938934
gene name LOC106594503
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 73337025 ~ 73338361 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945594.1
ATGGCTTCTGTTCGGTTGTCCAGGTCTCAGAGATTCTTCAAGAACTTATCTCTGGTCCTCCTGAGTGGATCCGTCCCTCTGCTCCTGTGGGCCGCTCTCAGACGCCCGCCGGGCTCTGACAGGAGTCCTCTCCCCGTTCTGGACCTCCTGCCCCCGGACTACGCTGCCGACTTGCCGGCCTGCTCAGCCATCATCCAGGGAGACCTGGAGGGTCTGGAGAGGAAGCAGCTCAGCGTCCTGCTGAAGACCATGAAGAAACAGCAGCTGCTGTCAGAGGCCTTCTACCACAACGTGACTCAGGACTGTCAGAGGTACGTCACAGAAAGAGAGTTCATCACCGTTCCTCTCAGTCAGGAGGAGAAGGAGTTCCCCATCGCCTACTCCATGGTCATCCACGACAAGATTGAGATGTTTGAGCGGCTTCTGCGTGCCCTGTACACTCCTCAGAACGTGTACTGCGTCCACATCGACCAGAAGTCCTCGGAGGCCTTCAGGACGGCAGTGAGGGCTATCGTGTCCTGTCTGACTAATGTGTTTGTGGCCAGTAAGTTAGAGAGTGTAGTATACGCCTCCTGGTCCAGAGTGCAGGCCGATCTGAACTGTATGGAGGATCTCCTGAAGTCACCTGTCCAGTGGAGGTACCTGATCAACACCTGTGGAACAGACTTCCCCATTAAGACCAACGCTGAGATGGTTCAGGCCCTCAAGCTGCAGAACGGGAGGAACAGCATGGAGTCAGAGACCACCGACGACTATAAAAACAGCAGATGGCAGTTTCACCACAAAATCACCAGCAACATGGTGGTCAAGACGAACGTTAGGAAGAGCCCTCCTCCAATCAGCACCCCCATGTTTTCTGGCAACGCCTATTTCCTGGTGTCCAGGGCCTTTGTTCGTCACGTGATGAAGTCTCAGGAGGTCCGGGCGCTGTTGGAGTGGGAGAAGGACACCTATAGTCCTGATGAACACCTGTGGGCCACCCTGCAGCGCATGCCCTCTGTGCCAGGCTCTAACCCTCCGCACATCAAGTACCATGAATCAGACATGAACGCCATTGCGCGCATTGTGAAGTGGCGTTCCCTGGAAGGAGATGTGAGGAACGGAGCCCCATATCCACCCTGCTCGGGTGTCTACAGGAGGTCCATTTGTGTCTACGGGGCTGGAGATCTCAGGTGGCTCCTACAACATCACCACCTCATCGCTAACAAGTTTGACCCTGAGGTGGATGATGTGGCTATCAGGTGTCTGGAGTCGTACCTGCGCTTCAAAGCCACAGACCGTGTTTCACGAAGGACAGTGGAATCTGAGAGGATCTTACAAAAACAATGAAATGTTAA

Function

NR:

description
beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 3-like, partial

GO: NA

KEGG:

id description
K09662 GCNT3; N-acetylglucosaminyltransferase 3, mucin type

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945594.1 True 1337 mRNA 0.55 1 73337025 73338361

Neighbor

gene id symbol gene type direction distance location
LOC110490803 LOC106591178 coding downstream 194055 72959216 ~ 73142970 (-)
LOC110490677 LOC106576365 coding downstream 420778 72855022 ~ 72916247 (-)
LOC118938848 NA coding downstream 422190 72910104 ~ 72914835 (-)
LOC110499730 LOC106609820 coding downstream 599587 72735016 ~ 72737438 (-)
LOC118938847 NA coding downstream 744852 72591662 ~ 72592173 (-)
mgst1.1 LOC106590880 coding upstream 545922 73884283 ~ 73902168 (-)
LOC118938851 LOC106575061 coding upstream 552557 73890918 ~ 73902131 (-)
LOC118938901 NA coding upstream 582092 73920453 ~ 73929800 (-)
LOC110527628 dera coding upstream 636573 73972321 ~ 73985501 (-)
LOC110513406 LOC106576618 coding upstream 828837 74167198 ~ 74213128 (-)
G1325146 NA non-coding downstream 24064 73312452 ~ 73312961 (-)
G1325138 NA non-coding downstream 34374 73300044 ~ 73302651 (-)
G1325132 NA non-coding downstream 52310 73284056 ~ 73284715 (-)
G1324994 NA non-coding downstream 78728 73258013 ~ 73258297 (-)
G1324988 NA non-coding downstream 82276 73252461 ~ 73254749 (-)
G1325181 NA non-coding upstream 55799 73394160 ~ 73395588 (-)
G1325186 NA non-coding upstream 64892 73403253 ~ 73405296 (-)
G1325197 NA non-coding upstream 89514 73427875 ~ 73428425 (-)
G1325199 NA non-coding upstream 94078 73432439 ~ 73433812 (-)
G1325227 NA non-coding upstream 185581 73523942 ~ 73524341 (-)
G1324805 NA other downstream 430674 72905449 ~ 72906351 (-)
LOC110531910 gsap other downstream 804010 72500414 ~ 72533138 (-)
LOC110531900 LOC106576463 other downstream 853597 72481939 ~ 72493287 (-)
G1324604 NA other downstream 855856 72480405 ~ 72481169 (-)
G1324569 NA other downstream 929256 72407421 ~ 72407769 (-)
G1325752 NA other upstream 336977 73675338 ~ 73677653 (-)
G1325780 NA other upstream 396320 73734681 ~ 73735097 (-)
G1325863 LOC106584099 other upstream 664086 74002447 ~ 74002749 (-)
LOC110511321 lemd3 other upstream 887055 74218902 ~ 74256009 (-)

Expression


Co-expression Network