LOC118936425 (lmo3)


Basic Information

Item Value
gene id LOC118936425
gene name lmo3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 73677084 ~ 73803344 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945340.1
aaggaagagagagggaggaaactatcagggaaggaagagagagggaggaaactatcagggaaggaaggaaaggaaaagagagggaatAGAAGAAACAGACATTGCGAGATAAaacaaagagagaagagaagaaccgtggagacagagagagtgagaccagggaggacgacagagagagagaccagggaggacgacagagaaagagagcgaccagggaggacgacagagagagggggagagagagcgcaaggGAGTTGAGTTGAGACAGGTGGTGCTTTTTCATCCAAGCCGCTGTGAAAAGAGGGGCGGCTATTGGCTACAATTGTGCCAACAACTCGCAGCATCAAGGACAACTTTTTCCCTCGTAAGGCTACAGTGGGTTTTTTTTTTGCGCTACTTCTTACTCACGCACTCAGCCTTTTTAACAGAACAGGCTAAGTATAAAGGACTATACAAATAGTGGACACGTTTTGTTTTCAATGTAACACTCAACAGAAAACAGGCAAGAGATTAAACTGCCAACCTTCGACtggtaacatttttttttacgcaTGAGCATCCCTCTGAAAGAAGGTATACAAATGCTCTCCGTCCAGCCGGACACCAAGCCAAAGGGCTGTGCCGGCTGCAACCGGAAGATTAAGGACCGATATCTGCTCAAGGCCCTGGATAAATACTGGCACGAGGACTGTCTCAAGTGTGCCTGCTGTGACTGCAGGCTGGGAGAGGTGGGCTCCACGCTCTATACCAAAGCCAACCTCATCCTCTGTCGGAGAGATTACCTACGGTTGTTTGGGGTAACAGGGAACTGTGCGGCCTGCAGTAAGCTGATCCCAGCCTTTGAGATGGTGATGAGAGCTAAAGAGAACGTCTATCACCTGGACTGCTTCGCCTGTCAGCTCTGTAATCAGAGgtTTTGTGTGGGAGATAAGTTCTTCCTGAAGAACAATATGATCCTGTGTCAGACGGACTACGAGGAGGGGCTGATGAAGGAGGGATACGCCCCGCAGGTTCGCTGACTACAGatgaagagtagagagagagagagaagggggggggtgaTGGGattgaggagagcagagagagactgaagggaggag
>XM_036945341.1
GAAATAATTCAATCCATGACAAAAGGTATACAAATGCTCTCCGTCCAGCCGGACACCAAGCCAAAGGGCTGTGCCGGCTGCAACCGGAAGATTAAGGACCGATATCTGCTCAAGGCCCTGGATAAATACTGGCACGAGGACTGTCTCAAGTGTGCCTGCTGTGACTGCAGGCTGGGAGAGGTGGGCTCCACGCTCTATACCAAAGCCAACCTCATCCTCTGTCGGAGAGATTACCTACGGTTGTTTGGGGTAACAGGGAACTGTGCGGCCTGCAGTAAGCTGATCCCAGCCTTTGAGATGGTGATGAGAGCTAAAGAGAACGTCTATCACCTGGACTGCTTCGCCTGTCAGCTCTGTAATCAGAGgtTTTGTGTGGGAGATAAGTTCTTCCTGAAGAACAATATGATCCTGTGTCAGACGGACTACGAGGAGGGGCTGATGAAGGAGGGATACGCCCCGCAGGTTCGCTGACTACAGatgaagagtagagagagagagagaagggggggggtgaTGGGattgaggagagcagagagagactgaagggaggagg
>XM_036945342.1
gtCTCACTCACTGATGCGCGGGAAGTGACCCTCAGCCAGAGAGGATGTGATATAGCCTCGACTACCGACGCAGCTCTGCTCGGCGCTCGGCAGCGGATATACAGTGAACAAAACACCTGTagtctttttgtttgtttgttgttgtctgTACCCAACGGCCTCTTCTCGGTTCGTTCGTGATCTGATGATCCATGAGGACCTGATTATTTCAAGACTGCTGAACATCACTCCAATCTCTAGTCCGTCGCGTCGCCATGTCAGTTTGGTGAACTTTACGCAAACgagaggatatatatatatatatatacagctgGAGTGTTGAAGGGCGGGGGTGCCTGATCTGAAGTTAGCCGTCTGTTCTGCGTAACTCGGGCTTTTAGAAAGGTATACAAATGCTCTCCGTCCAGCCGGACACCAAGCCAAAGGGCTGTGCCGGCTGCAACCGGAAGATTAAGGACCGATATCTGCTCAAGGCCCTGGATAAATACTGGCACGAGGACTGTCTCAAGTGTGCCTGCTGTGACTGCAGGCTGGGAGAGGTGGGCTCCACGCTCTATACCAAAGCCAACCTCATCCTCTGTCGGAGAGATTACCTACGGTTGTTTGGGGTAACAGGGAACTGTGCGGCCTGCAGTAAGCTGATCCCAGCCTTTGAGATGGTGATGAGAGCTAAAGAGAACGTCTATCACCTGGACTGCTTCGCCTGTCAGCTCTGTAATCAGAGgtTTTGTGTGGGAGATAAGTTCTTCCTGAAGAACAATATGATCCTGTGTCAGACGGACTACGAGGAGGGGCTGATGAAGGAGGGATACGCCCCGCAGGTTCGCTGACTACAGatgaagagtagagagagagagagaagggggggggtgaTGGGattgaggagagcagagagagactgaagggagga
>XM_036945338.1
TTAGGAGATTAGGGCGCCGCGAAGGGGGGAAGCATATGCCTTTGTCATCTGCTGTCATTTTGTTCGCTGCCTGTCACTCGCCAAGCACCCTGCgactgtgtgctgtgtgctgcctgGACGATTTCATTTCATAGTCGAGCACTGTTGTGACAAACGCGGTTTTACATCACCGTGTGGCGCTGGGTGATAGCGGACccgtgattctctctctctctctctctcgctcctttttTTTCCCCATTCTGTGTTTGTGCGCGCGGACGAGGTGGGATTGTTACACATAACAAAAGATAGCCACCCTCGGTGAGAAAACGGAACGTGCGTGCATACAGCTGGCTGATTGCTCACTTGGCCATAgagagataatccatccatcggGTGAATTTAGGATTCTGGGTTCGGACGGATCTCTTGTTGCATGGTGGTTCGGGCTCCCGACGAGGGTCAACAAATGCAGAAAGGGGAGAAAAGTTTCGGTATACAAATGCTCTCCGTCCAGCCGGACACCAAGCCAAAGGGCTGTGCCGGCTGCAACCGGAAGATTAAGGACCGATATCTGCTCAAGGCCCTGGATAAATACTGGCACGAGGACTGTCTCAAGTGTGCCTGCTGTGACTGCAGGCTGGGAGAGGTGGGCTCCACGCTCTATACCAAAGCCAACCTCATCCTCTGTCGGAGAGATTACCTACGGTTGTTTGGGGTAACAGGGAACTGTGCGGCCTGCAGTAAGCTGATCCCAGCCTTTGAGATGGTGATGAGAGCTAAAGAGAACGTCTATCACCTGGACTGCTTCGCCTGTCAGCTCTGTAATCAGAGgtTTTGTGTGGGAGATAAGTTCTTCCTGAAGAACAATATGATCCTGTGTCAGACGGACTACGAGGAGGGGCTGATGAAGGAGGGATACGCCCCGCAGGTTCGCTGACTACAGatgaagagtagagagagagagagaagggggggggtgaTGGGattgaggagagcagagagagactgaagggagg
>XM_036945339.1
agagagagagagagagggagagagagagagagagagaggagatttgTAGGAATGACTTTTAGATCCATGGCTTCATGTATACAAATGCTCTCCGTCCAGCCGGACACCAAGCCAAAGGGCTGTGCCGGCTGCAACCGGAAGATTAAGGACCGATATCTGCTCAAGGCCCTGGATAAATACTGGCACGAGGACTGTCTCAAGTGTGCCTGCTGTGACTGCAGGCTGGGAGAGGTGGGCTCCACGCTCTATACCAAAGCCAACCTCATCCTCTGTCGGAGAGATTACCTACGGTTGTTTGGGGTAACAGGGAACTGTGCGGCCTGCAGTAAGCTGATCCCAGCCTTTGAGATGGTGATGAGAGCTAAAGAGAACGTCTATCACCTGGACTGCTTCGCCTGTCAGCTCTGTAATCAGAGgtTTTGTGTGGGAGATAAGTTCTTCCTGAAGAACAATATGATCCTGTGTCAGACGGACTACGAGGAGGGGCTGATGAAGGAGGGATACGCCCCGCAGGTTCGCTGACTACAGatgaagagtagagagagagagagaagggggggggtgaTGGGattgaggagagcagagagagactgaagggaggagg

Function

symbol description
lmo3 Predicted to enable metal ion binding activity. Is expressed in basal plate midbrain region; nervous system; neural plate; notochord; and presumptive diencephalon. Orthologous to human LMO3 (LIM domain only 3).

NR:

description
PREDICTED: LIM domain only protein 3 isoform X4

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K24098 LMO1_3; rhombotin-1/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945340.1 False 1100 mRNA 0.50 4 73677084 73803343
XM_036945341.1 False 553 mRNA 0.53 4 73679020 73803344
XM_036945342.1 False 910 mRNA 0.52 4 73681370 73803342
XM_036945338.1 False 1001 mRNA 0.53 4 73682899 73803341
XM_036945339.1 True 604 mRNA 0.53 4 73689245 73803344

Neighbor

gene id symbol gene type direction distance location
LOC110517131 LOC105024897 coding upstream 140136 73258523 ~ 73536948 (+)
LOC118938849 LOC106609835 coding upstream 423177 73172193 ~ 73254659 (+)
LOC110490361 LOC106609821 coding upstream 826909 72742193 ~ 72850175 (+)
LOC110499728 NA coding upstream 847564 72826513 ~ 72829520 (+)
LOC110515111 LOC106561326 coding upstream 942614 72551117 ~ 72734470 (+)
LOC118938852 NA coding downstream 223746 74027090 ~ 74132032 (+)
LOC118938853 NA coding downstream 330876 74134220 ~ 74140504 (+)
LOC118938854 NA coding downstream 389737 74193081 ~ 74199908 (+)
LOC118936538 wif1 coding downstream 454191 74257535 ~ 74325622 (+)
LOC110513649 NA coding downstream 544697 74348041 ~ 74352684 (+)
G1325269 NA non-coding upstream 3585 73672602 ~ 73673499 (+)
G1325265 NA non-coding upstream 35313 73641498 ~ 73641771 (+)
G1325257 NA non-coding upstream 43737 73633098 ~ 73633347 (+)
G1325252 NA non-coding upstream 106726 73570120 ~ 73570358 (+)
G1325249 LOC105030512 non-coding upstream 107149 73563613 ~ 73569935 (+)
G1325263 NA non-coding downstream 675 73804019 ~ 73804596 (+)
G1325302 NA non-coding downstream 2189 73805533 ~ 73806738 (+)
G1325327 NA non-coding downstream 22837 73826181 ~ 73826413 (+)
G1325334 NA non-coding downstream 47674 73851018 ~ 73851480 (+)
G1325335 NA non-coding downstream 48694 73852038 ~ 73852306 (+)
G1324240 NA other upstream 770995 72905710 ~ 72906089 (+)
G1324195 NA other upstream 811275 72860820 ~ 72865809 (+)
G1324156 LOC106576365 other upstream 821062 72853566 ~ 72856022 (+)
G1325337 NA other downstream 53000 73856344 ~ 73856674 (+)
G1325481 NA other downstream 434995 74238339 ~ 74240169 (+)
LOC110517153 cpm other downstream 924455 74657149 ~ 74743482 (+)
G1326191 NA other downstream 1310345 75113689 ~ 75114514 (+)

Expression


Co-expression Network