LOC118938852


Basic Information

Item Value
gene id LOC118938852
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 74027090 ~ 74132032 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945350.1
TTCTCATTCAGTGAGTAGGCTGGTTTCGTGTGGGCTGTGGAGATGCATTTATAATgccctctgtttttttttttgtagtctTGCCAATCCCATGTAAAAACTCTCGCCCCCGGGGGTCATATAGCCTATAGGGTATAAACGTCTAGTTATTGCTATTTGTCCGGCAAAAATCGTGACACGTGGATTTGACAGTGCGGCAGCTGTCACCATTTCATTTCAATAGTTCTCCCGCTCATTTGTAACGACAGGAGCTGAAATTCCAATCGATCACGGGCGTATTTTATCACCGAAAGCCACCCCCCACCCACTTCGACAGAAAGGGGAGACggggagtttttttttttcctgAGCCAAATACCGAAGTGGGCAGCACGTGCTGTTCATAATACACTCAAGCAACATCTCCCtccaggcattttttttttttccatttttgtttttcttttcagtAGCACAAATTTATTCCGATTCATTTTAATAGCCGACCCGCCGGTTGATTCGTGCATTAGTTTACAACAAGAGGATTCCCCCCTTTCAAACTTTTGCACCAGGACGTCCGGTGGCTGGCGGTGTGGTCGGTTGGTGTGCAGGCGGGTAGGGCAGGATAGGCTCCAGGCTGACCGTGTGTGTAAGTACAGTAGACTAGAAGCTGCTGCAAGAGAGATTACTATTTTGGTACAAAGTCACAATGAGTGCACGCGGTGAAGAAGCCGGGGAGAGTTCAGGGACCGGGACCCAGGAGCCGGAGCCTGCGGCGGCTGCAGAGGCTCCGGCCAAGCGCAGACCGGGCAGACCGAGGAAGCCTGTTAAGGAACCTACTGGAGAGCCCGTCCCTAAACGACCAAGGGGTCGTCCCAGAGGCAGCAAGAACAAATGCCCCTCCAAGGCAGCTGCCAGGAAAGCCCTGGCCTCTGGAGAGAAGAGACCGAGAGGCAGACCCAGGAAATGGCCAAAGCAGGTGGTCCAAAAGCCAACTCAGgaagaaggaggagaagaagaagaagaagaagaagaagaggaaggggaggagtctGGAGAGGAGGATTAAAGAACAACAATCATTTGACCTCTACTTCCTTGTAAACAGTTCTTCCTCCTGGGGAACCACTGCCTTTCACCACTTACTAAGGACGTTGatccatgacctctgacctctgtctaCTCTCATATCATACTGTTTTCATTTAATACTTTtgtttgtgtttattttattattttttgttttttttatttgtttgttgtTGATTCTGAGATGAACACACGTTAATAATCCTCAGAACATGagccgcaaaaaaaaaaaaaaaaaacacgagaAAACACTAAATATGACAAACAAAGATTCGCTGTACCTCTTTACAACAACAGTGATGTTTTATCTGTTGTTATTAAGACCAGAGGTTCTGGGGGTTTTGTACCGTTGCAgtttctactcccctcctccccctgtcgtTGTCGACTGATTCTCCAGGCTGTCTTTCTTTGAGGGAGAGATAGatactaggggggggggggggggagtatgttATTGTCATTCACAAATTGCGACCATATGGCTGCTGTTTCAGTACAGAggtctagaacacacacacagaccccccctcccctccccgagTCGGACCACCAAACGCAGGGAGACAGACTACTCTCTCTTCAAGTCAGGTTATTTTAATCTATCATGTTTTTAATCTAGCGTGGATTTGCCTTTTTCATAACAAATTGGCTGCTTTAACTTGCTAAAATCACACCTTTTTAATGGATGAATTCCTCAGTTGAGGTTGTTGGCAGGTATGTCGTTTTTTCATCATATCTGTTTTACTGGAGAACCTTTTTCACCTGCTTTTGCTTCttcattttatattgtgataattatcattttatattgtgataattatcattttatattgtgataa
>TU1513440
CACCCCCCACCCACTTCGACAGAAAGGGGAGACggggagtttttttttttcctgAGCCAAATACCGAAGTGGGCAGCACGTGCTGTTCATAATACACTCAAGCAACATCTCCCtccaggcattttttttttttccatttttgtttttcttttcagtAGCACAAATTTATTCCGATTCATTTTAATAGCCGACCCGCCGGTTGATTCGTGCATTAGTTTACAACAAGAGGATTCCCCCCTTTCAAACTTTTGCACCAGGACGTCCGGTGGCTGGCGGTGTGGTCGGTTGGTGTGCAGGCGGGTAGGGCAGGATAGGCTCCAGGCTGACCGTGTGTGTAAGTACAGTAGACTAGAAGCTGCTGCAAGAGAGATTACTATTTTGGTACAAAGTCACAATGAGTGCACGCGGTGAAGAAGCCGGGGAGAGTTCAGGGACCGGGACCCAGGAGCCGGAGCCTGCGGCGGCTGCAGAGGCTCCGGCCAAGCGCAGACCGGGCAGACCGAGGAAGCCTGTTAAGGAACCTACTGGAGAGCCCGTCCCTAAACGACCAAGGGGTCGTCCCAGAGGCAGCAAGAACAAATGCCCCTCCAAGGCAGCTGCCAGGAAAGCCCTGGCCTCTGGAGAGAAGAGACCGAGAGGCAGACCCAGGAAATGGCCAAAGCAGGTGGTCCAAAAGCCAACTCAGgaagaaggaggagaagaagaagaagaagaagaagaagaggaaggggaggagtctGGAGAGGAGGATTAAAGAACAACAATCATTTGACCTCTACTTCCTTGTAAACAGTTCTTCCTCCTGGGGAACCACTGCCTTTCACCACTTACTAAGGACGTTGatccatgacctctgacctctgtctaCTCTCATATCATACTGTTTTCATTTAATACTTTtgtttgtgtttattttattattttttgttttttttatttgtttgttgtTGATTCTGAGATGAACACACGTTAATAATCCTCAGAACATGagccgcaaaaaaaaaaaaaaaaaacacgagaAAACACTAAATATGACAAACAAAGATTCGCTGTACCTCTTTACAACAACAGTGATGTTTTATCTGTTGTTATTAAGACCAGAGGTTCTGGGGGTTTTGTACCGTTGCAgtttctactcccctcctccccctgtcgtTGTCGACTGATTCTCCAGGCTGTCTTTCTTTGAGGGAGAGATAGatactaggggggggggggggggagtatgttATTGTCATTCACAAATTGCGACCATATGGCTGCTGTTTCAGTACAGAggtctagaacacacacacagaccccccctcccctccccgagTCGGACCACCAAACGCAGGGAGACAGACTACTCTCTCTTCAAGTCAGGTTATTTTAATCTATCATGTTTTTAATCTAGCGTGGATTTGCCTTTTTCATAACAAATTGGCTGCTTTAACTTGCTAAAATCACACCTTTTTAATGGATGAATTCCTCAGTTGAGGTTGTTGGCAGGTATGTCGTTTTTTCATCATATCTGTTTTACTGGAGAACCTTTTTCACCTGCTTTTGCTTCttcattttatattgtgataattatcattttatattgtgataattatcattttatattgtgataattatcattttatattgtgataattatcattttatattgtgataattatcattttatattgtgataattatcattttatattgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945350.1 False 1910 mRNA 0.45 5 74027090 74131948
TU1513440 True 1700 TUCP 0.44 5 74027384 74132032

Neighbor

gene id symbol gene type direction distance location
LOC118936425 lmo3 coding upstream 223746 73677084 ~ 73803344 (+)
LOC118938850 NA coding upstream 331795 73694833 ~ 73698637 (+)
LOC110517131 LOC105024897 coding upstream 490142 73258523 ~ 73536948 (+)
LOC118938849 LOC106609835 coding upstream 773183 73172193 ~ 73254659 (+)
LOC110490361 LOC106609821 coding upstream 1176915 72742193 ~ 72850175 (+)
LOC118938853 NA coding downstream 2272 74134220 ~ 74140504 (+)
LOC118938854 NA coding downstream 61133 74193081 ~ 74199908 (+)
LOC118936538 wif1 coding downstream 125587 74257535 ~ 74325622 (+)
LOC110513649 NA coding downstream 216093 74348041 ~ 74352684 (+)
LOC110491891 b2m coding downstream 242398 74369537 ~ 74377365 (+)
G1325408 NA non-coding upstream 5238 74021442 ~ 74021852 (+)
G1325405 NA non-coding upstream 19365 74007185 ~ 74007725 (+)
G1325403 NA non-coding upstream 23833 74003024 ~ 74003257 (+)
G1325401 NA non-coding upstream 29419 73997099 ~ 73997671 (+)
G1325399 NA non-coding upstream 32149 73994557 ~ 73994941 (+)
G1325449 NA non-coding downstream 28070 74160018 ~ 74214568 (+)
G1325458 NA non-coding downstream 34339 74166287 ~ 74166608 (+)
G1325459 NA non-coding downstream 36593 74168541 ~ 74169053 (+)
G1325380 NA non-coding downstream 86406 74218354 ~ 74219254 (+)
G1325337 NA other upstream 170416 73856344 ~ 73856674 (+)
G1324240 NA other upstream 1121001 72905710 ~ 72906089 (+)
G1324195 NA other upstream 1161281 72860820 ~ 72865809 (+)
G1324156 LOC106576365 other upstream 1171068 72853566 ~ 72856022 (+)
G1325481 NA other downstream 106391 74238339 ~ 74240169 (+)
LOC110517153 cpm other downstream 595851 74657149 ~ 74743482 (+)
G1326191 NA other downstream 981741 75113689 ~ 75114514 (+)
G1326467 NA other downstream 1390921 75522869 ~ 75527017 (+)
G1326503 cand1 other downstream 1461643 75593591 ~ 75598515 (+)

Expression


Co-expression Network