LOC110513406 (LOC106576618)


Basic Information

Item Value
gene id LOC110513406
gene name LOC106576618
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 74167198 ~ 74213128 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945357.1
TCTGTCTTTCTCTGATTGTGTGCCTGCCCTGCCATGGCTGTCCTGCTAAGGCGTGTGGGCCGTGTGGCTCTACAGTTGTCCCTGAGACAGACCAGGACCCCCCCCCAGAAGGCCCTGCTGATAGCCACTCTTCTAGcctgagTAGCATAGccccccatccctccctacatccctccctcctagACAGGGTGTGTCAGTCGGGcgtgtcctttctctctctctctccttcaatcAGCAGACAGGAGCAGCCAATCAGAAGCAGCCATGTCGGGGTTCAATCTGCTACACCTGATCACCAATGCCAAGCCTGTTACTCTGAAGCCATGTGGGCTCCCTTCAGGAACCTGCCGGACCAAGAAGACATGGCCCAAGTCCTTCTCTCAGGAGGAGCTGAAGAAACGTCTCTCCCCCATTCAGTTCCATGTCACCCAGGAGAAAGGAACAGAGAgTGCCTTCAGAGGGGAATACACTGAATATAAAGAGGATGGCATCTACACCTGTGTCGTCTGTGGCTCCCCGCTGTTCAAGTCAGAGACCAAGTTTGACTCTGGATCAGGTTGGCCTTCCTTCTATGACCTGGTAAAGGAGGAGTCAGTCACTGTAACAGACGATTTCGCCTACGGGATGCACAGAGTTGAGACCAGCTGTAGTCAGtgtggttCTCACCTCGGACACCTGTTTGATGACGGCCCCAGACCCACAGGGAAACGATACTGCATCAACTCTGCCTCTCTGGGCTTCCAGTCCGCCTCAGCCTCTAGGCCACCCAGCAACGGAGATGGGACAGGGGcaggagctggggctggggctggggcagggcctggggctggggctggggctggtggTGCGGTCGGGGGCAAGACTGAGCTCTGAGTAAATGGTCTCCTTGGTCTTGGACAGATTTCAGGAATACAGGAAGTACAGGCACGGTCACTCACTCCTTATCCAAACTGGTGGCCTAGGTCCTGGTCGAAATGTTacgaacagaacagagaacagctGGAGAATATAGGTTACACAGAACCCGGAAACAGTCAGCCAACTAGGTTACACAGATCTGAAAACGGTCAGACAACTAGGTTACACAGAACCCGAAAACAGTCAGACAACTACAGTCAGCTCAATAAGGGGCCATCGTCACCCCTTAGAAACATGTGGAACATGATGCCTCTTCTGTGCTCATGTAGGttacacacacccaaacacagtCGGTCAAACACAGTCGGTCAAACACAGTCGGTCAAATGACCCCAGTGGCCATGTAACAAGCTGGCCCACCTCTGGCTACCAGCCTTAATAAAGTCCCAGGTCTCTACTGTACTATCCAACTGTCTGAGGAGGCACATATTGGATGCAGTTTCACGTTGCTATCATTGCTTTCATACCGTTTACAAGTTTAGATTATATTTTAAAGTATAAATATCAACtgttatatatttttctttctaGTATATTTAAAACTTTATGctttttttgggggaaaaaagtgaatgaattatatattattatgATTGTGTGGACTTGACTTTGAAGAACAATGTGTGttgtttaataaataaataaaaagtgatATTTGATACAGAGGGGTTGATAGTTTAAGGACGACGCTCCTATGAGCTGTAAAATAAACACTAAGAGGATAAATAAGCATTCTGTCCAATAAGaaagacacacactacacacacacacacacacactacacacactacatacacacacacacacacacaca
>XM_036945356.1
CCTAACTAAGAAGTCCACAGTAGACATTTCCCACTATAGTGCCAAGCTGCAAAGTCGAAATTGGCATAAATCGTGAAAATGTATGAAGACGTCAATTCGCTTTTTGCTCTTCATTTAAGCGTAGGTCAGGCACACGTTTAGGAGTATGGTTAATGTTAGCGTTAATTTTGAAATCCGATTTTtaaagaagataaattgtagaactTCCGGGTTTTGCAGCTTGGCCATATAGTGACAACCCCTCAGACAGGCCAGCGGTGTGTTGTCAGTTTCTCTCGTCTCACTGAGTTGTGTTCACAGCTAATGCACGGACACGGACCGGACCGCCCGTCTGCCAGTGGGTTGACGATCTGCGGTACTTTGTTGTCCCTGCTACTTTTTACAGcctgagTAGCATAGccccccatccctccctacatccctccctcctagACAGGGTGTGTCAGTCGGGcgtgtcctttctctctctctctccttcaatcAGCAGACAGGAGCAGCCAATCAGAAGCAGCCATGTCGGGGTTCAATCTGCTACACCTGATCACCAATGCCAAGCCTGTTACTCTGAAGCCATGTGGGCTCCCTTCAGGAACCTGCCGGACCAAGAAGACATGGCCCAAGTCCTTCTCTCAGGAGGAGCTGAAGAAACGTCTCTCCCCCATTCAGTTCCATGTCACCCAGGAGAAAGGAACAGAGAgTGCCTTCAGAGGGGAATACACTGAATATAAAGAGGATGGCATCTACACCTGTGTCGTCTGTGGCTCCCCGCTGTTCAAGTCAGAGACCAAGTTTGACTCTGGATCAGGTTGGCCTTCCTTCTATGACCTGGTAAAGGAGGAGTCAGTCACTGTAACAGACGATTTCGCCTACGGGATGCACAGAGTTGAGACCAGCTGTAGTCAGtgtggttCTCACCTCGGACACCTGTTTGATGACGGCCCCAGACCCACAGGGAAACGATACTGCATCAACTCTGCCTCTCTGGGCTTCCAGTCCGCCTCAGCCTCTAGGCCACCCAGCAACGGAGATGGGACAGGGGcaggagctggggctggggctggggcagggcctggggctggggctggggctggtggTGCGGTCGGGGGCAAGACTGAGCTCTGAGTAAATGGTCTCCTTGGTCTTGGACAGATTTCAGGAATACAGGAAGTACAGGCACGGTCACTCACTCCTTATCCAAACTGGTGGCCTAGGTCCTGGTCGAAATGTTacgaacagaacagagaacagctGGAGAATATAGGTTACACAGAACCCGGAAACAGTCAGCCAACTAGGTTACACAGATCTGAAAACGGTCAGACAACTAGGTTACACAGAACCCGAAAACAGTCAGACAACTACAGTCAGCTCAATAAGGGGCCATCGTCACCCCTTAGAAACATGTGGAACATGATGCCTCTTCTGTGCTCATGTAGGttacacacacccaaacacagtCGGTCAAACACAGTCGGTCAAACACAGTCGGTCAAATGACCCCAGTGGCCATGTAACAAGCTGGCCCACCTCTGGCTACCAGCCTTAATAAAGTCCCAGGTCTCTACTGTACTATCCAACTGTCTGAGGAGGCACATATTGGATGCAGTTTCACGTTGCTATCATTGCTTTCATACCGTTTACAAGTTTAGATTATATTTTAAAGTATAAATATCAACtgttatatatttttctttctaGTATATTTAAAACTTTATGctttttttgggggaaaaaagtgaatgaattatatattattatgATTGTGTGGACTTGACTTTGAAGAACAATGTGTGttgtttaataaataaataaaaagtgatATTTGATACAGAGGGGTTGATAGTTTAAGGACGACGCTCCTATGAGCTGTAAAATAAACACTAAGAGGATAAATAAGCATTCTGTCCAATAAGaaagacacacactacacacacacacacacacactacacacactacatacacacacacacacacacaca
>XM_036945354.1
TACCTAACTAAGAAGTCCACAGTAGACATTTCCCACTATAGTGCCAAGCTGCAAAGTCGAAATTGGCATAAATCGTGAAAATGTATGAAGACGTCAATTCGCTTTTTGCTCTTCATTTAAGCGTAGGTCAGGCACACGTTTAGGAGTATGGTTAATGTTAGCGTTAATTTTGAAATCCGATTTTtaaagaagataaattgtagaactTCCGGGTTTTGCAGCTTGGCCATATAGTGACAACCCCTCAGACAGGCCAGCGGTGTGTTGTCAGTTTCTCTCGTCTCACTGAGTTGTGTTCACAGCTAATGCACGGACACGGACCGGACCGCCCGTCTGCCAGTGGGTTGACGATCTGCGGTACTTTGTTGTCCCTGCTACTTTTTACAGcTTGGTCTGTCTTTCTCTGATTGTGTGCCTGCCCTGCCATGGCTGTCCTGCTAAGGCGTGTGGGCCGTGTGGCTCTACAGTTGTCCCTGAGACAGACCAGGACCCCCCCCCAGAAGGCCCTGCTGATAGCCACTCTTCTAGGAACCTGCCGGACCAAGAAGACATGGCCCAAGTCCTTCTCTCAGGAGGAGCTGAAGAAACGTCTCTCCCCCATTCAGTTCCATGTCACCCAGGAGAAAGGAACAGAGAgTGCCTTCAGAGGGGAATACACTGAATATAAAGAGGATGGCATCTACACCTGTGTCGTCTGTGGCTCCCCGCTGTTCAAGTCAGAGACCAAGTTTGACTCTGGATCAGGTTGGCCTTCCTTCTATGACCTGGTAAAGGAGGAGTCAGTCACTGTAACAGACGATTTCGCCTACGGGATGCACAGAGTTGAGACCAGCTGTAGTCAGtgtggttCTCACCTCGGACACCTGTTTGATGACGGCCCCAGACCCACAGGGAAACGATACTGCATCAACTCTGCCTCTCTGGGCTTCCAGTCCGCCTCAGCCTCTAGGCCACCCAGCAACGGAGATGGGACAGGGGcaggagctggggctggggctggggcagggcctggggctggggctggggctggtggTGCGGTCGGGGGCAAGACTGAGCTCTGAGTAAATGGTCTCCTTGGTCTTGGACAGATTTCAGGAATACAGGAAGTACAGGCACGGTCACTCACTCCTTATCCAAACTGGTGGCCTAGGTCCTGGTCGAAATGTTacgaacagaacagagaacagctGGAGAATATAGGTTACACAGAACCCGGAAACAGTCAGCCAACTAGGTTACACAGATCTGAAAACGGTCAGACAACTAGGTTACACAGAACCCGAAAACAGTCAGACAACTACAGTCAGCTCAATAAGGGGCCATCGTCACCCCTTAGAAACATGTGGAACATGATGCCTCTTCTGTGCTCATGTAGGttacacacacccaaacacagtCGGTCAAACACAGTCGGTCAAACACAGTCGGTCAAATGACCCCAGTGGCCATGTAACAAGCTGGCCCACCTCTGGCTACCAGCCTTAATAAAGTCCCAGGTCTCTACTGTACTATCCAACTGTCTGAGGAGGCACATATTGGATGCAGTTTCACGTTGCTATCATTGCTTTCATACCGTTTACAAGTTTAGATTATATTTTAAAGTATAAATATCAACtgttatatatttttctttctaGTATATTTAAAACTTTATGctttttttgggggaaaaaagtgaatgaattatatattattatgATTGTGTGGACTTGACTTTGAAGAACAATGTGTGttgtttaataaataaataaaaagtgatATTTGATACAGAGGGGTTGATAGTTTAAGGACGACGCTCCTATGAGCTGTAAAATAAACACTAAGAGGATAAATAAGCATTCTGTCCAATAAGaaagacacacactacacacacacacacacacactacacacactacatacacacacacacacacacaca
>XM_036945355.1
TTACCTAACTAAGAAGTCCACAGTAGACATTTCCCACTATAGTGCCAAGCTGCAAAGTCGAAATTGGCATAAATCGTGAAAATGTATGAAGACGTCAATTCGCTTTTTGCTCTTCATTTAAGCGTAGGTCAGGCACACGTTTAGGAGTATGGTTAATGTTAGCGTTAATTTTGAAATCCGATTTTtaaagaagataaattgtagaactTCCGGGTTTTGCAGCTTGGCCATATAGTGACAACCCCTCAGACAGGCCAGCGGTGTGTTGTCAGTTTCTCTCGTCTCACTGAGTTGTGTTCACAGCTAATGCACGGACACGGACCGGACCGCCCGTCTGCCAGTGGGTTGACGATCTGCGGTACTTTGTTGTCCCTGCTACTTTTTACAGGAACCTGCCGGACCAAGAAGACATGGCCCAAGTCCTTCTCTCAGGAGGAGCTGAAGAAACGTCTCTCCCCCATTCAGTTCCATGTCACCCAGGAGAAAGGAACAGAGAgTGCCTTCAGAGGGGAATACACTGAATATAAAGAGGATGGCATCTACACCTGTGTCGTCTGTGGCTCCCCGCTGTTCAAGTCAGAGACCAAGTTTGACTCTGGATCAGGTTGGCCTTCCTTCTATGACCTGGTAAAGGAGGAGTCAGTCACTGTAACAGACGATTTCGCCTACGGGATGCACAGAGTTGAGACCAGCTGTAGTCAGtgtggttCTCACCTCGGACACCTGTTTGATGACGGCCCCAGACCCACAGGGAAACGATACTGCATCAACTCTGCCTCTCTGGGCTTCCAGTCCGCCTCAGCCTCTAGGCCACCCAGCAACGGAGATGGGACAGGGGcaggagctggggctggggctggggcagggcctggggctggggctggggctggtggTGCGGTCGGGGGCAAGACTGAGCTCTGAGTAAATGGTCTCCTTGGTCTTGGACAGATTTCAGGAATACAGGAAGTACAGGCACGGTCACTCACTCCTTATCCAAACTGGTGGCCTAGGTCCTGGTCGAAATGTTacgaacagaacagagaacagctGGAGAATATAGGTTACACAGAACCCGGAAACAGTCAGCCAACTAGGTTACACAGATCTGAAAACGGTCAGACAACTAGGTTACACAGAACCCGAAAACAGTCAGACAACTACAGTCAGCTCAATAAGGGGCCATCGTCACCCCTTAGAAACATGTGGAACATGATGCCTCTTCTGTGCTCATGTAGGttacacacacccaaacacagtCGGTCAAACACAGTCGGTCAAACACAGTCGGTCAAATGACCCCAGTGGCCATGTAACAAGCTGGCCCACCTCTGGCTACCAGCCTTAATAAAGTCCCAGGTCTCTACTGTACTATCCAACTGTCTGAGGAGGCACATATTGGATGCAGTTTCACGTTGCTATCATTGCTTTCATACCGTTTACAAGTTTAGATTATATTTTAAAGTATAAATATCAACtgttatatatttttctttctaGTATATTTAAAACTTTATGctttttttgggggaaaaaagtgaatgaattatatattattatgATTGTGTGGACTTGACTTTGAAGAACAATGTGTGttgtttaataaataaataaaaagtgatATTTGATACAGAGGGGTTGATAGTTTAAGGACGACGCTCCTATGAGCTGTAAAATAAACACTAAGAGGATAAATAAGCATTCTGTCCAATAAGaaagacacacactacacacacacacacacacactacacacactacatacacacacacacacacacaca
>TU1514169
GTGTTGTCAGTTTCTCTCGTCTCACTGAGTTGTGTTCACAGCTAATGCACGGACACGGACCGGACCGCCCGTCTGCCAGTGGGTTGACGATCTGCGGTACTTTGTTGTCCCTGCTACTTTTTACAGcctgagTAGCATAGccccccatccctccctacatccctccctcctagACAGGGTGTGTCAGTCGGGcgtgtcctttctctctctctctccttcaatcAGCAGACAGGAGCAGCCAATCAGAAGCAGCCATGTCGGGGTTCAATCTGCTACACCTGATCACCAATGCCAAGCCTGTTACTCTGAAGCCATGTGGGCTCCCTTCAGGAACCTGCCGGACCAAGAAGACATGGCCCAAGTCCTTCTCTCAGGAGGAGCTGAAGAAACGTCTCTCCCCCATTCAGTTCCATGTCACCCAGGAGAAAGGAACAGAGAgTGCCTTCAGAGGGGAATACACTGAATATAAAGAGGATGGCATCTACACCTGTGTCGTCTGTGGCTCCCCGCTGTTCAAGTCAGAGACCAAGTTTGACTCTGGATCAGGTTGGCCTTCCTTCTATGACCTGGTAAAGGAGGAGTCAGTCACTGTAACAGACGATTTCGCCTACGGGATGCACAGAGTTGAGACCAGCTGTAGTCAGtgtggttCTCACCTCGGACACCTGTTTGATGACGGCCCCAGACCCACAGGGAAACGATACTGCATCAACTCTGCCTCTCTGGGCTTCCAGTCCGCCTCAGCCTCTAGGCCACCCAGCAACGGAGATGGGACAG

Function

NR:

description
PREDICTED: methionine-R-sulfoxide reductase B3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945357.1 False 1732 mRNA 0.49 7 74167198 74198789
XM_036945356.1 False 1981 mRNA 0.47 7 74167198 74213125
XM_036945354.1 False 1920 mRNA 0.47 7 74167198 74213127
XM_036945355.1 False 1780 mRNA 0.46 6 74167198 74213128
TU1514169 True 777 TUCP 0.54 7 74168143 74212866

Neighbor

gene id symbol gene type direction distance location
LOC110527628 dera coding downstream 181697 73972321 ~ 73985501 (-)
LOC118938901 NA coding downstream 237398 73920453 ~ 73929800 (-)
mgst1.1 LOC106590880 coding downstream 265030 73884283 ~ 73902168 (-)
LOC118938851 LOC106575061 coding downstream 265067 73890918 ~ 73902131 (-)
LOC118938934 LOC106594503 coding downstream 828837 73337025 ~ 73338361 (-)
LOC110511321 lemd3 coding upstream 5774 74218902 ~ 74256009 (-)
LOC110491887 tmbim4 coding upstream 144998 74358126 ~ 74374229 (-)
LOC118938857 NA coding upstream 148471 74361599 ~ 74366042 (-)
LOC110514977 NA coding upstream 206800 74419928 ~ 74421766 (-)
LOC118938856 LOC106576675 coding upstream 307971 74521099 ~ 74552198 (-)
G1325954 NA non-coding downstream 21858 74144721 ~ 74145340 (-)
G1325953 NA non-coding downstream 24518 74142473 ~ 74142680 (-)
G1325890 NA non-coding downstream 27117 74136696 ~ 74140081 (-)
G1325943 NA non-coding downstream 49416 74117508 ~ 74117782 (-)
G1325892 NA non-coding downstream 61286 74103476 ~ 74105912 (-)
G1325928 NA non-coding upstream 2576 74215704 ~ 74217237 (-)
G1325934 NA non-coding upstream 4519 74217647 ~ 74217881 (-)
G1325965 NA non-coding upstream 11377 74224505 ~ 74224868 (-)
G1325980 NA non-coding upstream 61377 74274505 ~ 74275652 (-)
G1325863 LOC106584099 other downstream 164449 74002447 ~ 74002749 (-)
G1325780 NA other downstream 432101 73734681 ~ 73735097 (-)
G1325752 NA other downstream 489545 73675338 ~ 73677653 (-)
G1324805 NA other downstream 1260847 72905449 ~ 72906351 (-)
LOC110531910 gsap other downstream 1634183 72500414 ~ 72533138 (-)
G1325915 b2m other upstream 162173 74375301 ~ 74395568 (-)
LOC118938855 LOC106576675 other upstream 392243 74602942 ~ 74607316 (-)
G1326070 NA other upstream 509461 74722589 ~ 74723400 (-)
G1326095 NA other upstream 559171 74772299 ~ 74773953 (-)

Expression


Co-expression Network