LOC118938856 (LOC106576675)


Basic Information

Item Value
gene id LOC118938856
gene name LOC106576675
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 74521099 ~ 74552198 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945363.1
GCAGGTATAAAAGCAATGATCACTGACACAACTTCCTCTTTCAGGTCTCAGATCAACCAACGCAGTAACACAGGTCTCAGATCAACCAACGCAGTAACACAGGTCCAATGGCAGCCATGGAGAAATCTGAGCCTCTTGACAGCATTAGTGATTCATCGTCAGATCAAATAACTACAAAGATGGAGAACATGAAGATGGCTGAGCCTAATGATAGCACGATTTATCCAAAAAAGGAACACTGTCACTCATTCTCCTTCAGTTGCCCAACTTGTAAAATACCCAAAGAGGAAATCACCTGCACCAACCCTGGAACAATATTGAGAGCTCTTGAAACTAATGACACATTCAAGGAGTTAAACCAAATGGACAGGAAGACACTGAAAGGGAAAGACATTGTCATCAGCAGTTCTCACGGGTACATAGTGAAGCACTTTCCATGTTGGCTGATCAAAGAGGATGACCATCTCACTATTAAGATGGTCACACATGCCACAGATGAACCTGCAGGGGTCACGGATCAGGAAACAGACAATTATGTCACTTTCTCTGTTGAGACAATGGGAGGGAAAAACAGCAAATCAAAACAAATACTTGGAAACAAACAACTGGAGTCCTACGGACCTCTATGTGTCTATGCAAAACAGAAGGAGGAAGTGAAGAAGGCTCTACGAAATGATGGACGCTTCTCAAACATTGTGTTTGAACAGAGATGCCAGCTCTCTGAGCGATCAACAGGAATCAAGGTTTCAATGGGGCAAATTGCAAAAAAACTTAATGGTAGAAACTTTGAAATCTGTCTGACAAAGCATAAGGAGAAAACGGCAATTAAGATGGAAACATCTGACTCcacaataaaaacaaaaaacattgtaaCCACGCAAACATCTCTGTTCAACCCAAGCCCTGactctgaaggagacgacacacAGATGTCTCCATCGACGCTAACAACATAAACATCAGATGTAGGGGAGTCCTCTTCGAGAAGAAAGCAGAAACGAAAATGCATTCCCGTGCCAAAACATGGTGAAATATTGACGATCCTTCGCAACCAGTTTGAAGATCTGGTGAAGCAGATGGAAAGTAGGAGGGAGGACAGCCAACAGAAGACATTTCCTGAAGAGTTGGATCTCATGAAGCAGGAATTCGGGAAAATCAGACAAAAGTTCTCTGAGGTTCACAGAGTGAAGAAATTGATTGAACTTGGTGCCTCCGTTTGTCAGGTGATTGTTGAAGGTGTTCAGGGTGTTCTGGGGACAGGCTTCGTGCTGTTTGACAACTACATCCTAACAAATGCACATTTGTTTGGTGAAAATGTAAGAGAAAACATACAGTTGTTAGTCGATGTATCTGTAAAGTTCAACTATGAAAATCCAAATGGATACGATGTGAACGTATTCAGAGCAAAAACCCTGCTGATCGACTTTCAATATGGACATCAGGGAAAACATCATATAGACTATGCCATACTGGAGCTGGATCCTCAGAATAAGA

Function

NR:

description
protein FAM111A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945363.1 True 1494 mRNA 0.42 5 74521099 74552198

Neighbor

gene id symbol gene type direction distance location
LOC110514977 NA coding downstream 99333 74419928 ~ 74421766 (-)
LOC110491887 tmbim4 coding downstream 146870 74358126 ~ 74374229 (-)
LOC118938857 NA coding downstream 155057 74361599 ~ 74366042 (-)
LOC110511321 lemd3 coding downstream 265090 74218902 ~ 74256009 (-)
LOC110513406 LOC106576618 coding downstream 307971 74167198 ~ 74213128 (-)
LOC118938855 LOC106576675 coding upstream 50744 74602942 ~ 74607316 (-)
LOC110514334 mdm2 coding upstream 222249 74774447 ~ 74797613 (-)
LOC110516942 LOC106576641 coding upstream 248365 74800563 ~ 74805861 (-)
LOC110514333 nu107 coding upstream 253811 74806009 ~ 74876319 (-)
LOC110490689 rap1b coding upstream 330831 74883029 ~ 74988331 (-)
G1325932 NA non-coding downstream 15845 74414736 ~ 74505254 (-)
G1326009 NA non-coding downstream 108384 74412499 ~ 74412715 (-)
G1326007 NA non-coding downstream 114626 74406187 ~ 74406473 (-)
G1326006 NA non-coding downstream 115756 74401016 ~ 74405343 (-)
G1325926 NA non-coding downstream 124636 74395770 ~ 74396463 (-)
G1326036 NA non-coding upstream 33528 74585726 ~ 74586202 (-)
G1326023 NA non-coding upstream 55690 74607888 ~ 74608236 (-)
G1326038 NA non-coding upstream 56135 74608333 ~ 74608626 (-)
G1326039 NA non-coding upstream 56520 74608718 ~ 74608924 (-)
G1325931 NA non-coding upstream 56746 74608944 ~ 74614607 (-)
G1325915 b2m other downstream 125531 74375301 ~ 74395568 (-)
G1325863 LOC106584099 other downstream 518350 74002447 ~ 74002749 (-)
G1325780 NA other downstream 786002 73734681 ~ 73735097 (-)
G1326070 NA other upstream 170391 74722589 ~ 74723400 (-)
G1326095 NA other upstream 220101 74772299 ~ 74773953 (-)
G1326164 NA other upstream 500551 75052749 ~ 75053357 (-)
G1326996 NA other upstream 1446308 75998506 ~ 75999000 (-)

Expression


Co-expression Network