LOC110514334 (mdm2)


Basic Information

Item Value
gene id LOC110514334
gene name mdm2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 74774447 ~ 74797613 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945384.1
GCTGCGCCCAATAGCATCCTGGCGTTAACAGCCGGAGCAGTGCTAGTCCTGACATGTCTCTCTGTGCCTATTTAAATCCGGGGGAGACGGGGAAGTGGTTCCTAACGCTACCAGCCGAGCTGAAGCACTTTATGTACAGAATATGAAGGGTGTATTATAGAGGGGGTGTATCAAGAACATCTCATTAGTacttctatttatttatttagGTGAGAGACAGAATGGCAGAGAATTGTGAGAGAATGTCAGAATGGCATAGAAGCAGTTCCCAAATAAATACCTTGGACAATGAGAAACTTGTACGACCTAAAGAGAAACTGCGCGTGTTATTGCAGCAGGCAGGTGCAGACAAAGACGTTTTCACCATGAAAGAGGTGATATTCTACCTGGGCCAGTACATCATGAAGAAACAGCTTTATGACATGAAGCAGCAACACATAGTGCACTGTGCTGACGACCccctgggggctgtactgggagTGGACAGCTTCTCTGTTAAAGAACCCcgAGTTCTCTTCGCTATGATCACACAAAATCTCCTAGCAGTGAAAAATCAAGAATCCCAATCTGTCTTCACGGAACCCAGGAGCCAGAGTGAACCGGATAGAGGGCCTAAGGAGACGGACTCAGACTGTCATTCATCATCTACCTCAGAAcgcaggaggagaaggaggagtagTGACCCTGAGGGGACGTCGTCGACACAAGAGGAGGACGGGTGTGAGTCCAGGAAGAGACATAGGTCAGACAGCTTGTCTCTGACCTTTGATGACAGCATGTCCTGGTATGTGATTGGAGGCCTGAGACGAGACCGGAGGAGCAGCGAGTCTTCAGTCTCACACAGTAACGCTGAAGTAGGTTCATTGGTCAGTGACGCGGGTGACGATGTTCTGAGCCAGGATCTGGGCTCAGACTCTGATAACTTCAGCGTGGAGTTTGAGGTGGAGTCCATCGACTCGGACGCCTACAGCGATCCCGAAGAGGCTTCAGTGTCTGGAGAGGACGAGGTGTATGAAGTCACCATCTTCGAGGCAGAGGACGAGGACTCGTTCGATGACGACACTGAAATCACGGAAGCAGACTACTGGAAGTGCTCAAAGTGTGAGGAGTTGAACCCTCCCCTCCCCCGAAACTGCAACCGCTGCTGGACGCTAAGAATGGACTGGTTTCCCGATTCTGACAGCAACTCTGCTGCCCCCAACCTCAAACCCTTACCCCCCAAGCCTACCCCAGCCCCGACAGAGCCTGACGAGACCGAAGGTCTGGATGTCCCAGACGGGAAGAGAGCCAGGTCGCCCCTTCCCCTCCTCAAAGACTCCCAGGAATTGATGTCCGTCTCTGGCCCCGATTCCCAAGACTCGGCCTGCTCCTCCCAGCCCTCCACCTCTTCTTCGAACTCCAACGGCGTGGGCTCAGGCTCGTCCTCTAGCGCCCCCTTCAGTCAAGAAGTGATGGCACCAGACTTGGAGCGTTTCAACAGCCTGGAGGCTCACCTCCCCGCCAGCTGCCTGGAGCCCTGCGTCATCTGTCAGACCAGGCCCAAGAACGGCTGTATCGTACACGGACGCACAGGGCACCTCATGGCCTGTTACACCTGCGCCAGGAAACTGAAGAAGAGGAACAAGCTGTGTCCCGTCTGCAGGCAGCCGATCCAGTCTGTCGTCTTAATTTATCTCAGCTGAGGACGGCTATCGGCTAGACTGTGCATTCCAAATAAGCAGTCTATTCCCTTATGTAAGTGCACTACTCTCAACCATGGTctcaataggactctggtctaacgtagtgcactatatagggagtagggtgtaaCCCTTAGCTACACAACTCCCTGTTCCTCAAAAACAACTTCAATCctaaatgaataaataatatgTTTTAATTTTGTTTATTTGGAAGTGATTTTATTTATGAACAAGAGTTTGTTGACTCTTATTAAACAAGGtgcctgttgttgttgttattgttgtgttgATTTGGGATTGATTTATAGTGTTCAGTCAAATAGCCTTTCTAGTTTTTCAAATGGATCAAATTCTCTTAGTGGTGAAATATTCAATATATTTTATTAAATAAAGAATGTCTAGCAAATTAA
>XM_036945385.1
atatttttcttcttcttgtgaTTGATTCGTCAACCTGATTCATCTTCAGTGCTCGTGCCTTACTTTGGACCCGCCACTAGGGGCGACAAAATTAACGTTCGTTTTCCTCGCTAACttttacaagcaagttattggaTTGTGAAAGTAACGTGAGAGACAGAATGGCAGAGAATTGTGAGAGAATGTCAGAATGGCATAGAAGCAGTTCCCAAATAAATACCTTGGACAATGAGAAACTTGTACGACCTAAAGAGAAACTGCGCGTGTTATTGCAGCAGGCAGGTGCAGACAAAGACGTTTTCACCATGAAAGAGGTGATATTCTACCTGGGCCAGTACATCATGAAGAAACAGCTTTATGACATGAAGCAGCAACACATAGTGCACTGTGCTGACGACCccctgggggctgtactgggagTGGACAGCTTCTCTGTTAAAGAACCCcgAGTTCTCTTCGCTATGATCACACAAAATCTCCTAGCAGTGAAAAATCAAGAATCCCAATCTGTCTTCACGGAACCCAGGAGCCAGAGTGAACCGGATAGAGGGCCTAAGGAGACGGACTCAGACTGTCATTCATCATCTACCTCAGAAcgcaggaggagaaggaggagtagTGACCCTGAGGGGACGTCGTCGACACAAGAGGAGGACGGGTGTGAGTCCAGGAAGAGACATAGGTCAGACAGCTTGTCTCTGACCTTTGATGACAGCATGTCCTGGTATGTGATTGGAGGCCTGAGACGAGACCGGAGGAGCAGCGAGTCTTCAGTCTCACACAGTAACGCTGAAGTAGGTTCATTGGTCAGTGACGCGGGTGACGATGTTCTGAGCCAGGATCTGGGCTCAGACTCTGATAACTTCAGCGTGGAGTTTGAGGTGGAGTCCATCGACTCGGACGCCTACAGCGATCCCGAAGAGGCTTCAGTGTCTGGAGAGGACGAGGTGTATGAAGTCACCATCTTCGAGGCAGAGGACGAGGACTCGTTCGATGACGACACTGAAATCACGGAAGCAGACTACTGGAAGTGCTCAAAGTGTGAGGAGTTGAACCCTCCCCTCCCCCGAAACTGCAACCGCTGCTGGACGCTAAGAATGGACTGGTTTCCCGATTCTGACAGCAACTCTGCTGCCCCCAACCTCAAACCCTTACCCCCCAAGCCTACCCCAGCCCCGACAGAGCCTGACGAGACCGAAGGTCTGGATGTCCCAGACGGGAAGAGAGCCAGGTCGCCCCTTCCCCTCCTCAAAGACTCCCAGGAATTGATGTCCGTCTCTGGCCCCGATTCCCAAGACTCGGCCTGCTCCTCCCAGCCCTCCACCTCTTCTTCGAACTCCAACGGCGTGGGCTCAGGCTCGTCCTCTAGCGCCCCCTTCAGTCAAGAAGTGATGGCACCAGACTTGGAGCGTTTCAACAGCCTGGAGGCTCACCTCCCCGCCAGCTGCCTGGAGCCCTGCGTCATCTGTCAGACCAGGCCCAAGAACGGCTGTATCGTACACGGACGCACAGGGCACCTCATGGCCTGTTACACCTGCGCCAGGAAACTGAAGAAGAGGAACAAGCTGTGTCCCGTCTGCAGGCAGCCGATCCAGTCTGTCGTCTTAATTTATCTCAGCTGAGGACGGCTATCGGCTAGACTGTGCATTCCAAATAAGCAGTCTATTCCCTTATGTAAGTGCACTACTCTCAACCATGGTctcaataggactctggtctaacgtagtgcactatatagggagtagggtgtaaCCCTTAGCTACACAACTCCCTGTTCCTCAAAAACAACTTCAATCctaaatgaataaataatatgTTTTAATTTTGTTTATTTGGAAGTGATTTTATTTATGAACAAGAGTTTGTTGACTCTTATTAAACAAGGtgcctgttgttgttgttattgttgtgttgATTTGGGATTGATTTATAGTGTTCAGTCAAATAGCCTTTCTAGTTTTTCAAATGGATCAAATTCTCTTAGTGGTGAAATATTCAATATATTTTATTAAATAAAGAATGTCTAGCAAATTAA

Function

symbol description
mdm2 Predicted to enable p53 binding activity and ubiquitin protein ligase activity. Acts upstream of or within several processes, including negative regulation of apoptotic process; pronephric glomerulus morphogenesis; and response to X-ray. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Is expressed in several structures, including blood; digestive system; mesoderm; peripheral olfactory organ; and yolk syncytial layer. Human ortholog(s) of this gene implicated in chronic myeloid leukemia; endocrine gland cancer (multiple); glioblastoma; ichthyosis; and sarcoma. Orthologous to human MDM2 (MDM2 proto-oncogene).

NR:

description
E3 ubiquitin-protein ligase Mdm2

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0010165 response to X-ray biological_process
GO:0071157 negative regulation of cell cycle arrest biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K06643 MDM2; E3 ubiquitin-protein ligase Mdm2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945384.1 False 2095 mRNA 0.49 11 74774447 74796142
XM_036945385.1 True 2035 mRNA 0.49 11 74774447 74797613
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Neighbor

gene id symbol gene type direction distance location
LOC118938855 LOC106576675 coding downstream 168331 74602942 ~ 74607316 (-)
LOC118938856 LOC106576675 coding downstream 222249 74521099 ~ 74552198 (-)
LOC110514977 NA coding downstream 352681 74419928 ~ 74421766 (-)
LOC110491887 tmbim4 coding downstream 400218 74358126 ~ 74374229 (-)
LOC118938857 NA coding downstream 408405 74361599 ~ 74366042 (-)
LOC110516942 LOC106576641 coding upstream 2950 74800563 ~ 74805861 (-)
LOC110514333 nu107 coding upstream 8396 74806009 ~ 74876319 (-)
LOC110490689 rap1b coding upstream 85416 74883029 ~ 74988331 (-)
LOC118938932 NA coding upstream 393008 75190621 ~ 75191934 (-)
LOC110518764 LOC106576636 coding upstream 722688 75520301 ~ 75547039 (-)
G1326092 LOC106592876 non-coding downstream 4067 74769025 ~ 74770380 (-)
G1326093 NA non-coding downstream 6625 74767442 ~ 74767822 (-)
G1326091 LOC106592876 non-coding downstream 8638 74765396 ~ 74765809 (-)
G1326090 NA non-coding downstream 18368 74755292 ~ 74756079 (-)
G1326087 NA non-coding downstream 23921 74749966 ~ 74750526 (-)
G1326112 NA non-coding upstream 90359 74887972 ~ 74888428 (-)
G1326113 NA non-coding upstream 94143 74891756 ~ 74892483 (-)
G1326117 NA non-coding upstream 104348 74901961 ~ 74902496 (-)
G1326123 NA non-coding upstream 124746 74922359 ~ 74924008 (-)
G1326125 NA non-coding upstream 127502 74925115 ~ 74926058 (-)
G1326095 NA other downstream 494 74772299 ~ 74773953 (-)
G1326070 NA other downstream 51047 74722589 ~ 74723400 (-)
G1325915 b2m other downstream 378879 74375301 ~ 74395568 (-)
LOC110511321 lemd3 other downstream 539633 74218902 ~ 74256009 (-)
G1326164 NA other upstream 255136 75052749 ~ 75053357 (-)
G1326996 NA other upstream 1200893 75998506 ~ 75999000 (-)
LOC110515635 LOC106576658 other upstream 2620708 77418263 ~ 77506802 (-)
G1328123 NA other upstream 3073666 77871279 ~ 77874604 (-)
LOC118938867 LOC106576670 other upstream 3500963 78298576 ~ 78452504 (-)

Expression

LOC110514334(mdm2) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 80.
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LOC110514334(mdm2) Expression in each Bioproject

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LOC110514334(mdm2) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network