LOC110490689 (rap1b)


Basic Information

Item Value
gene id LOC110490689
gene name rap1b
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 74883029 ~ 74988331 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945390.1
CCTGGTGAAAATCAAAGAGggtGACACCAGACACAGCGAATGATGCGTGAATACAAGTTAGTCGTCCTGGGCTCTGGAGGCGTGGGCAAGTCTGCTCTGACTGTACAGTTTGTTCAGGGGATTTTCGTGGAGAAATATGACCCGACAATAGAAGACTCGTACAGAAAGcaagtGGAGGTGGACGGGCAGCAGTGTATGCTGGAAATTCTGGACACTGCAGGGACGgaACAATTCACAGCCATGAGAGATCTGTACATGAAGAATGGCCAGGGCTTTGCGCTAGTGTACTCCATCACAGCCCAGTCCACCTTCAACGATCTGCAAGACCTACGAGAACAGATCCTCCGAGTCAAAGACACTGACGATGTTCCGATGATTCTGGTGGGTAATAAATGTGATCTGGAGGATGAGCGTGTTGTGGGGAAGGAACAGGGACAGAACCTGGCCAGACAGTGGAGCAGCTGTGCTTTCCTGGAGTCCTCTGCAAAGTCCAAGATCAACGTCAACGAGatCTTCTATGACCTGGTCAGGCAAATCAACAGGAAAACCCCAGTACCTGGGAAGACACGCAAAAAGTCCAACTGTCAGCTCCTCTAATACACAGCCGCTCTGTCGCACTGAGCCAGgtCTGATTTGCTGCTGTCTCTCTCAGCAGTGCCAGCATTCCGACGTGACTAAAACCTAACATGGAATGGACTTTCCTGTGTGGTGACGCCCCCTTTAACACCCAACAACCAACAAACAAACCGACCAACGGATTCAACGCTACAAATACATCAGTTTTTACACACAGATTAACCATTATCACTCTCCAGTGTCACGAGAACTAAGATTTCTACTTACAAATATAGATATTCCAACTGAAATGGAAAAATTAAGTTCATAAAATAATAAAGTAAAACGAAATAGGTAAATCAGTCAATATGAACCGAAATAAAAATCCCGATCCCCTTACACACAGTGTTATTGCTAACGGAGACAGTAGCCGTAGAAACGGAATGTCTAGCCAGAATGTGCACGTTGCCACGGTGATGCGGTATTTATAAGCACCTCTATATTAGccagagagaaaaagacaaagtCCCCCAAAGAGGCACCTATATAGTTCAGTTCATACAGATAACTTGCTCCTGGGGGTTTATTTTcgaactttttatttttattttccttcGATCATTCAACATCAtttctctgtctttttctgtcttttttttaattattttttttaaatgactagtTTTGTCTCTACTGAGAGATGCTATACTGCGACAGCTATTGATGTGAGTTTTATTTGAGGAGTAAACCTGTGGCTACGACAGTGATTATTATTCTTATTATTCTTATTATATGTGAGTTTCATTTGAGGAGTAAACCTGTGGATACAACAGTGATGATTATGTGtgtaaaaagagaaaaaaaagtataatgTTTTTTTCAGTAACTATCATATTGTCTTTTAGCCTGATGATGTTGCCTTCAAATagggtttttttttcttttttctggaGAATCCAACTATGATCCAATCATCTTTCTTTTCTGGAGAATCTAACTATGATCCAATCGTCTTTCTTTTCTGGAGAATCTAACTATGATCCAATCATCCTTCTATGTCTTGCCTGGGTTTTCTtccgtctgaaatggcacccaaGTGTATtatatttgaccagagcccaatggttTCCCTATTGGTTTCCCTATGGGTGTCCCTATTGGTTGTCCCTATTGGTTTTccctatgggtttccctatgggtttccctatgggTTTCCATATTGGTTTTCCCTATTGGTTTTccctatgggtttccctatgggTTTCCCTATTGGTTTTTCTATGGGTGTCCCTATTGGTTTCCCTATTGGTTTCCCCTATTGGTTTCCCTATTGGTTTTTCTATGGGTTTCCCTATTGGTTTCCCTATTGGTTTCCCCTATTGGTTTCCCTATTGGTTTTCCCTATTggtttccctatgggccctggtcaaaagtagtacactatataaggaATTAAGATGCAATTTTGGAGGCAGCCCTTGTGTTGTTTACAAAGATGTTTGTACAGTGGGGTTTTTCAATTGGGGTTGTGGTCAAAGAGGGACTGGACATTTTAACAAGCGACCAAACTTCTGAGACACCAATGGCCGACGTGACTGGGCGATCCTcatcatgttttttttgtttttttaaactttatcCTTCCAAGGCCGTCTCTCATTGGTTGGTTTGTCCAGTTAGCCAATCCCCTCTCATGGAATCTGCGATCTACAACAGGAAGTatagattttctttttttttttatgaggGTTTTTAAtacgaaaaaaataaataaaataatgtcatTGGT
>XM_036945389.1
CTGAGCACAGTCGAGCGGTGCTCGTCTCAAAACGAGGCTGCAACGTCATGAGAAAACGcaaaacctcacccagagagaagCGACAGACCGAGCGACTAGAGGCGCTAACAGATTGGAGCTACGGAGGATAACTggtGACACCAGACACAGCGAATGATGCGTGAATACAAGTTAGTCGTCCTGGGCTCTGGAGGCGTGGGCAAGTCTGCTCTGACTGTACAGTTTGTTCAGGGGATTTTCGTGGAGAAATATGACCCGACAATAGAAGACTCGTACAGAAAGcaagtGGAGGTGGACGGGCAGCAGTGTATGCTGGAAATTCTGGACACTGCAGGGACGgaACAATTCACAGCCATGAGAGATCTGTACATGAAGAATGGCCAGGGCTTTGCGCTAGTGTACTCCATCACAGCCCAGTCCACCTTCAACGATCTGCAAGACCTACGAGAACAGATCCTCCGAGTCAAAGACACTGACGATGTTCCGATGATTCTGGTGGGTAATAAATGTGATCTGGAGGATGAGCGTGTTGTGGGGAAGGAACAGGGACAGAACCTGGCCAGACAGTGGAGCAGCTGTGCTTTCCTGGAGTCCTCTGCAAAGTCCAAGATCAACGTCAACGAGatCTTCTATGACCTGGTCAGGCAAATCAACAGGAAAACCCCAGTACCTGGGAAGACACGCAAAAAGTCCAACTGTCAGCTCCTCTAATACACAGCCGCTCTGTCGCACTGAGCCAGgtCTGATTTGCTGCTGTCTCTCTCAGCAGTGCCAGCATTCCGACGTGACTAAAACCTAACATGGAATGGACTTTCCTGTGTGGTGACGCCCCCTTTAACACCCAACAACCAACAAACAAACCGACCAACGGATTCAACGCTACAAATACATCAGTTTTTACACACAGATTAACCATTATCACTCTCCAGTGTCACGAGAACTAAGATTTCTACTTACAAATATAGATATTCCAACTGAAATGGAAAAATTAAGTTCATAAAATAATAAAGTAAAACGAAATAGGTAAATCAGTCAATATGAACCGAAATAAAAATCCCGATCCCCTTACACACAGTGTTATTGCTAACGGAGACAGTAGCCGTAGAAACGGAATGTCTAGCCAGAATGTGCACGTTGCCACGGTGATGCGGTATTTATAAGCACCTCTATATTAGccagagagaaaaagacaaagtCCCCCAAAGAGGCACCTATATAGTTCAGTTCATACAGATAACTTGCTCCTGGGGGTTTATTTTcgaactttttatttttattttccttcGATCATTCAACATCAtttctctgtctttttctgtcttttttttaattattttttttaaatgactagtTTTGTCTCTACTGAGAGATGCTATACTGCGACAGCTATTGATGTGAGTTTTATTTGAGGAGTAAACCTGTGGCTACGACAGTGATTATTATTCTTATTATTCTTATTATATGTGAGTTTCATTTGAGGAGTAAACCTGTGGATACAACAGTGATGATTATGTGtgtaaaaagagaaaaaaaagtataatgTTTTTTTCAGTAACTATCATATTGTCTTTTAGCCTGATGATGTTGCCTTCAAATagggtttttttttcttttttctggaGAATCCAACTATGATCCAATCATCTTTCTTTTCTGGAGAATCTAACTATGATCCAATCGTCTTTCTTTTCTGGAGAATCTAACTATGATCCAATCATCCTTCTATGTCTTGCCTGGGTTTTCTtccgtctgaaatggcacccaaGTGTATtatatttgaccagagcccaatggttTCCCTATTGGTTTCCCTATGGGTGTCCCTATTGGTTGTCCCTATTGGTTTTccctatgggtttccctatgggtttccctatgggTTTCCATATTGGTTTTCCCTATTGGTTTTccctatgggtttccctatgggTTTCCCTATTGGTTTTTCTATGGGTGTCCCTATTGGTTTCCCTATTGGTTTCCCCTATTGGTTTCCCTATTGGTTTTTCTATGGGTTTCCCTATTGGTTTCCCTATTGGTTTCCCCTATTGGTTTCCCTATTGGTTTTCCCTATTggtttccctatgggccctggtcaaaagtagtacactatataaggaATTAAGATGCAATTTTGGAGGCAGCCCTTGTGTTGTTTACAAAGATGTTTGTACAGTGGGGTTTTTCAATTGGGGTTGTGGTCAAAGAGGGACTGGACATTTTAACAAGCGACCAAACTTCTGAGACACCAATGGCCGACGTGACTGGGCGATCCTcatcatgttttttttgtttttttaaactttatcCTTCCAAGGCCGTCTCTCATTGGTTGGTTTGTCCAGTTAGCCAATCCCCTCTCATGGAATCTGCGATCTACAACAGGAAGTatagattttctttttttttttatgaggGTTTTTAAtacgaaaaaaataaataaaataatgtcatTGGT

Function

symbol description
rap1b Enables MAP kinase kinase activity. Acts upstream of with a positive effect on hematopoietic stem cell differentiation. Acts upstream of or within chordate embryonic development; convergent extension; and heart development. Located in cell-cell junction. Is expressed in several structures, including brain; cardiovascular system; floor plate; hindbrain neural plate; and mesoderm. Orthologous to human RAP1B (RAP1B, member of RAS oncogene family).

NR:

description
ras-related protein Rap-1b

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0060026 convergent extension biological_process
GO:0005829 cytosol cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005911 cell-cell junction cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07836 RAP1B; Ras-related protein Rap-1B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945390.1 False 2344 mRNA 0.41 8 74883029 74915285
XM_036945389.1 True 2458 mRNA 0.42 8 74883029 74988331

Neighbor

gene id symbol gene type direction distance location
LOC110514333 nu107 coding downstream 6710 74806009 ~ 74876319 (-)
LOC110516942 LOC106576641 coding downstream 77168 74800563 ~ 74805861 (-)
LOC110514334 mdm2 coding downstream 85416 74774447 ~ 74797613 (-)
LOC118938855 LOC106576675 coding downstream 276913 74602942 ~ 74607316 (-)
LOC118938856 LOC106576675 coding downstream 330831 74521099 ~ 74552198 (-)
LOC118938932 NA coding upstream 202290 75190621 ~ 75191934 (-)
LOC110518764 LOC106576636 coding upstream 531970 75520301 ~ 75547039 (-)
LOC110490682 cand1 coding upstream 576277 75564608 ~ 75648161 (-)
LOC110513781 LOC106599032 coding upstream 1489218 76477549 ~ 76499886 (-)
LOC118936278 irak3 coding upstream 1511788 76500119 ~ 76525322 (-)
G1326097 NA non-coding downstream 94756 74787649 ~ 74788273 (-)
G1326092 LOC106592876 non-coding downstream 112649 74769025 ~ 74770380 (-)
G1326093 NA non-coding downstream 115207 74767442 ~ 74767822 (-)
G1326091 LOC106592876 non-coding downstream 117220 74765396 ~ 74765809 (-)
G1326090 NA non-coding downstream 126950 74755292 ~ 74756079 (-)
G1326151 NA non-coding upstream 37712 75026043 ~ 75026303 (-)
G1326157 NA non-coding upstream 47336 75035667 ~ 75036236 (-)
G1326158 NA non-coding upstream 48148 75036479 ~ 75036933 (-)
G1326161 NA non-coding upstream 53744 75042075 ~ 75098410 (-)
G1326174 NA non-coding upstream 81030 75069361 ~ 75073284 (-)
G1326095 NA other downstream 109076 74772299 ~ 74773953 (-)
G1326070 NA other downstream 159629 74722589 ~ 74723400 (-)
G1325915 b2m other downstream 487461 74375301 ~ 74395568 (-)
LOC110511321 lemd3 other downstream 648215 74218902 ~ 74256009 (-)
G1326164 NA other upstream 64418 75052749 ~ 75053357 (-)
G1326996 NA other upstream 1010175 75998506 ~ 75999000 (-)
LOC110515635 LOC106576658 other upstream 2429990 77418263 ~ 77506802 (-)
G1328123 NA other upstream 2882948 77871279 ~ 77874604 (-)
LOC118938867 LOC106576670 other upstream 3310245 78298576 ~ 78452504 (-)

Expression


Co-expression Network