LOC118938859 (LOC106593189)


Basic Information

Item Value
gene id LOC118938859
gene name LOC106593189
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 75251801 ~ 75272607 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945396.1
AAAGGTTAGTAGTGACTGTAGAGAGGAATGCCAGACCCACAGAGATTTCACCTGCGGAGAACAGAGCAGACCTGACTGACTCACCTGCTGAGAGGACGGGAAGAAGAAGGGAATCATTTGCTCAGTCAGTCTTTCAATCAGTCAGTTAGTAGAGTAGGAAACTCAGTGAGTCGATTGTACATCAGTGATTCAGAGATTCAGTGAATCAGATCCTGTATGTGCTGTAGGTCAGATATTTGGCAGGTCATTTGAATCAGGTGATTCAAACAGAAATTGAACGAACCAGGTGACCAGGTGATTCAGATAGAGACAAGGTGAGCAGTTGACCCAGTCGAAGCAGGCACCAGTTGATCCAATCGAAGCAGGCACCAGTTGATCCAGTCGAAGCAGGCACAAGTTGAACCAGTCGAAGCAGGCACCAGTTGATCCAGTATAAATATGCCCAGTTTGTCCAGTGTGGTCCCGTTCTCTCTGCTGCTGGTTCTCCTTCTGGCTGTTATGGGTCAGGACTGTGCTACTTCCCGGGTCCAGAGGGAGGCCCGGTCCAGAGCCCGGTCCAGGGTGTGTGGGAAGAACAGGTTCTCTCACTGTGTGGACCTGGCCAAACTGCAGGAGCTGATCCAGGAAGTCCAGAAAGACTTCacaAACACGTCTCATGATGACAGGATCCTGTTAAAGACAGTCACCTTTGACAAGATCAAGAAGCACAAGAAGTACCACGGCTGTGTCCTGCTCAAAATCATTGACTTTTATCGGGAAGTTCTCCAGAGACAAGACAGAAATTATCCTGACCTCGGGGGCCTGCTGGATGAAGTGAAGGAATGCATTCACCCAgTAAAGATCTGTGAAAAGCTATACCAGGAAGCTGCTGGGAAGCCAGTGAATGAGTCTAAGATAGAGGAAGATTTGGAGCTGCTGTCGAAGGATGCAGCCATACTGCAGCTGCAGAGACTGAAGGCAGCCAGTAAAAAGGTGGTTGAGCTGTCCGAGAGGGCGACTCTGGACAAGGCCATGGTAGAGCTACAGGGTCTAGAGGACTACATTCAGGGGAGGGGCCTCCGCAGGAACTGAGGAAATAATCGGACCGCcaggaacaacacacacacacacacacacagacacacgcgttACCGTGACTACATATACACAGTCCTGCGTTACAGTGACTACATTTACCGTCTTGATGTCACATTTACTGGTTTTACCCTCGTGAGCTGTCGTTGCTTGTAGCCATATTCCCTTAGACATGTTCTGACACGTCCCctgttgtttgtctatttcttcaTCTACTTTGGATAACTGTAAACAATTTGATTGACTTGGAATTTTGAACTTGAACCAATATTCAGTTGGGGAGAATGTTTGTGTCCACTGTTGCTGCTAGTACTACATGTTatattactactagtactacatgTTATATTACTACTAGTACTAAATGTCctgttactactagtactacatgttctgttactactagtactgcatgttctgttactac
>XM_036945395.1
AAGGTTAGTAGTGACTGTAGAGAGGAATGCCAGACCCACAGAGATTTCACCTGCGGAGAACAGAGCAGACCTGACTGACTCACCTGCTGAGAGGACGGGAAGAAGAAGGGAATCATTTGCTCAGTCAGTCTTTCAATCAGTCAGTTAGTAGAGTAGGAAACTCAGTGAGTCGATTGTACATCAGTGATTCAGAGATTCAGTGAATCAGATCCTGTATGTGCTGTAGGTCAGATATTTGGCAGGTCATTTGAATCAGGTGATTCAAACAGAAATTGAACGAACCAGGTGACCAGGTGATTCAGATAGAGACAAGGTGAGCAGTTGACCCAGTCGAAGCAGGCACCAGTTGATCCAATCGAAGCAGGCACCAGTTGATCCAGTCGAAGCAGGCACAAGTTGAACCAGTCGAAGCAGGCACCAGTTGATCCAGTATAAATATGCCCAGTTTGTCCAGTGTGGTCCCGTTCTCTCTGCTGCTGGTTCTCCTTCTGGCTGTTATGGGTCAGGACTGTGCTACTTCCCGGGTCCAGAGGGAGGCCCGGTCCAGAGCCCGGTCCAGGGTGTGTGGGAAGAACAGGTTCTCTCACTGTGTGGACCTGGCCAAACTGCAGGAGCTGATCCAGGAAGTCCAGAAAGACTTCACAAACACGTCTCATGATGACAGGATCCTGTTAAAGACAGTCACCTTTGACCATATCAAGAAGCACAAGAAGTACCACGGCTGTGTCCTGCTCAAAATCATTGACTTTTATCGGGAAGTTCTCCAGAGACAAGACAGAAATTATCCTGACCTCGGGGGCCTGCTGGATGAAGTGAAGGAATGCATTCACCCAgTAAAGATCTGTGAAAAGCTATACCAGGAAGCTGCTGGGAAGCCAGTGAATGAGTCTAAGATAGAGGAAGATTTGGAGCTGCTGTCGAAGGATGCAGCCATACTGCAGCTGCAGAGACTGAAGGCAGCCAGTAAAAAGGTGGTTGAGCTGTCCGAGAGGGCGACTCTGGACAAGGCCATGGTAGAGCTACAGGGTCTAGAGGACTACATTCAGGGGAGGGGCCTCCGCAGGAACTGAGGAAATAATCGGACCGCcaggaacaacacacacacacacacacacagacacacgcgttACCGTGACTACATATACACAGTCCTGCGTTACAGTGACTACATTTACCGTCTTGATGTCACATTTACTGGTTTTACCCTCGTGAGCTGTCGTTGCTTGTAGCCATATTCCCTTAGACATGTTCTGACACGTCCCctgttgtttgtctatttcttcaTCTACTTTGGATAACTGTAAACAATTTGATTGACTTGGAATTTTGAACTTGAACCAATATTCAGTTGGGGAGAATGTTTGTGTCCACTGTTGCTGCTAGTACTACATGTTatattactactagtactacatgTTATATTACTACTAGTACTAAATGTCctgttactactagtactacatgttctgttactactagtactgcatgttctgttactac
>TU1514595
cacacacacacataACCGTGACTACATATACACAGTCCTGCGTTACAGTGACTACATTTACCGTCTTGATGTCACATTTACTGGTTTTACCCTCGTGAGCTGTCGTTGCTTGTAGCCATATTCCCTTAGACATGTTCTGACACGTCCCctgttgtttgtctatttcttcaTCTACTTTGGATAACTGTAAACAATTTGATTGACTTGGAATTTTGAACTTGAACCAATATTCAGTTGGGGAGAATGTTTGTGTCCACTGTTGCTGCTAGTACTACATGTTatattac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945396.1 False 1501 mRNA 0.47 6 75261369 75272607
XM_036945395.1 False 1500 mRNA 0.47 6 75261370 75272607
TU1514595 True 287 lncRNA 0.40 2 75251801 75272508

Neighbor

gene id symbol gene type direction distance location
LOC118938933 ifngamma1 coding upstream 32504 75224113 ~ 75228865 (+)
ifngamma2 ifngamma2 coding upstream 47328 75210642 ~ 75214041 (+)
il-22 il-22 coding upstream 175283 75083986 ~ 75086086 (+)
LOC110510748 mdm1 coding upstream 192160 75031834 ~ 75069209 (+)
LOC118938858 LOC106592876 coding upstream 490931 74746678 ~ 74770438 (+)
LOC110499731 dyrk2 coding downstream 59943 75332550 ~ 75366189 (+)
LOC118938860 NA coding downstream 94351 75366958 ~ 75372063 (+)
LOC118938861 grip1 coding downstream 459542 75732149 ~ 76472933 (+)
LOC118938862 NA coding downstream 2143980 77416342 ~ 77505819 (+)
LOC118938903 NA coding downstream 2538234 77810841 ~ 77812644 (+)
G1326250 NA non-coding upstream 882 75259889 ~ 75260487 (+)
G1326190 NA non-coding upstream 60110 75197151 ~ 75201259 (+)
G1326191 NA non-coding upstream 146855 75113689 ~ 75114514 (+)
G1325747 LOC106594295 non-coding upstream 163920 75096295 ~ 75097449 (+)
G1326327 NA non-coding downstream 6341 75278948 ~ 75279172 (+)
G1326360 NA non-coding downstream 87857 75360464 ~ 75362121 (+)
G1326361 NA non-coding downstream 88336 75360943 ~ 75361937 (+)
G1326407 NA non-coding downstream 111541 75384148 ~ 75384362 (+)
G1326410 NA non-coding downstream 116399 75389006 ~ 75391143 (+)
LOC110517153 cpm other upstream 520733 74657149 ~ 74743482 (+)
G1325481 NA other upstream 1021200 74238339 ~ 74240169 (+)
LOC118938852 NA other upstream 1129337 74027090 ~ 74132032 (+)
G1325337 NA other upstream 1404695 73856344 ~ 73856674 (+)
G1326467 NA other downstream 250262 75522869 ~ 75527017 (+)
G1326503 cand1 other downstream 320984 75593591 ~ 75598515 (+)
G1326586 NA other downstream 533392 75805999 ~ 75806519 (+)
G1326605 NA other downstream 612204 75884811 ~ 75885147 (+)
G1327230 NA other downstream 1314967 76587574 ~ 76589885 (+)
G1325727 NA non-coding upstream 178520 75071315 ~ 75073281 (+)

Expression


Co-expression Network