LOC110514961 (LOC106590998)


Basic Information

Item Value
gene id LOC110514961
gene name LOC106590998
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 76675121 ~ 76681446 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110514961
ATGGCAGAGCTAGGAGTGTTTGCTGCAAGGAGACAAGAAGATACAACCAGAGAATCAGGCTTTGCCTACACCAACAGCAATCATACCAAAGATCCTTTTGAGGGCCCCAACTACCACATTGCTCCAAGATGGGTGTACAACATCTCAACACTCTGGATGCTCTTTGTGGTCGTCGCCTCAACCTTCACCAACGGCCTGGTACTGGTGGCCACTGCCAAATTCAAGAAGCTCCAACATCCTCTCAACTGGATCCTGGTCAACCTGGCGTTTGCCGACATTGCGGAGACTCTTTTGGCGAGCACCATCAGCGTTTGCAACCAGATGTTTGGCTACTTTATTCTTGGACACCCGATGTGTGTCTTTGAGTGATTCACCGTCGCCACATGTGGTATTGCTGGTCTGTGGTCTCTGGCTGTTATCTCCTGGGAGAGATGGGTGGTGGTGTGTAAGCCCTTTGGAAATGTCAAGTTTGATGCTAAATGGGCCATGGGAGGTATAATCTTCTCCTGGGTCTGGTCTGCTTTCTGGTGCGCCCCTCCTATCTTCGGCTGGAGCAGGTACTGGCCTCATGGACTGAAAACGTCCTGTGGACCTGATGTGTTCGGAGGTAATGAGGATCCTGGAGTCCTGTCGTACATGATCGTTCTCATGATTACATGTTGCTTCCTGCCCCTGGGAGTGATCGTCTTCTGCTACCTGTTTGTGTGGCTGGCCATCCGTGCCGTAGCCGCGCAGCAGAAAGACTCTGAGTCGACGCAGAAGGCTGAGAAGGAAGTATCCAGGATGGTTGTTGTCATGATTTTTGCTTACTGTGTATGCTGGGGACCTTACACAGCCTTTGCCTGCTTTGCTGCGGCTAACCCTGGGTATGCTTTCCACCCTCTGGCTGCTGCTCTGCCTGCCTACTTTGCCAAAAGCGCCACCATCTGGAATCCAGTGATCTATGTCTTCATGAATAAACAGTTCCGTACGTGCATCATGCAGCTCTTTGGCAAGGAAGAAGACGATGGCTCGGAGGTGTCTACATCAAAAACAGAAGTATCCACCGTGGCACCTTCATAA

Function

NR:

description
PREDICTED: red-sensitive opsin-like

GO: NA

KEGG:

id description
K04251 OPN1LW, OPN1MW; long/medium wavelength-sensitive opsin

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110514961 True 1062 mRNA 0.51 6 76675121 76681446

Neighbor

gene id symbol gene type direction distance location
LOC118936278 irak3 coding downstream 149799 76500119 ~ 76525322 (-)
LOC110513781 LOC106599032 coding downstream 175235 76477549 ~ 76499886 (-)
LOC110490682 cand1 coding downstream 1026960 75564608 ~ 75648161 (-)
LOC110518764 LOC106576636 coding downstream 1128082 75520301 ~ 75547039 (-)
LOC118938932 NA coding downstream 1483187 75190621 ~ 75191934 (-)
LOC110512778 trhde coding upstream 190021 76871462 ~ 77277803 (-)
LOC118938902 NA coding upstream 669832 77351278 ~ 77352450 (-)
LOC110515635 LOC106576658 coding upstream 736817 77418263 ~ 77506802 (-)
LOC118936539 LOC106597902 coding upstream 832840 77514286 ~ 77515212 (-)
LOC110490591 LOC106609839 coding upstream 840366 77521812 ~ 77574184 (-)
G1327302 NA non-coding downstream 2983 76671772 ~ 76672138 (-)
G1327300 NA non-coding downstream 6525 76668365 ~ 76668596 (-)
G1327293 NA non-coding downstream 38402 76636492 ~ 76636719 (-)
G1327292 NA non-coding downstream 39160 76634599 ~ 76635961 (-)
G1327213 NA non-coding downstream 106396 76568497 ~ 76568725 (-)
G1327308 NA non-coding upstream 19585 76701031 ~ 76701379 (-)
G1327324 NA non-coding upstream 50494 76731940 ~ 76732518 (-)
G1327328 NA non-coding upstream 53892 76735338 ~ 76735791 (-)
G1327329 NA non-coding upstream 54392 76735838 ~ 76736079 (-)
G1327352 NA non-coding upstream 81052 76762498 ~ 76762795 (-)
G1326996 NA other downstream 676121 75998506 ~ 75999000 (-)
G1326164 NA other downstream 1621764 75052749 ~ 75053357 (-)
G1326095 NA other downstream 1901168 74772299 ~ 74773953 (-)
G1326070 NA other downstream 1951721 74722589 ~ 74723400 (-)
LOC118938855 LOC106576675 other downstream 2067805 74602942 ~ 74607316 (-)
G1328123 NA other upstream 1189833 77871279 ~ 77874604 (-)
LOC118938867 LOC106576670 other upstream 1617130 78298576 ~ 78452504 (-)
G1328815 NA other upstream 2081653 78763099 ~ 78766048 (-)
G1328861 NA other upstream 2188879 78870325 ~ 78871031 (-)

Expression


Co-expression Network