LOC118938862


Basic Information

Item Value
gene id LOC118938862
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 77416342 ~ 77505819 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036244.1
TTATATAACACCTTATCCATTCCTCAGCCCTTCCACCTCTATTTAAATGTCAACTACTTCAGCATTACATTTGACTATTCACACGATTCAGGAGCGATTAACAAGTCAAGGTAATAAGGAACAATCTGCTGAACACTAAATACCTTATAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTGGGAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTTGGAGTCAGGGGTAATAAGGAACAATCTGCTGAACACTAAATACCTTATAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTGGGAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTGGGAGTCAGGGGCAATAAGGAGCAATCTGCTGAACACTAAATACCTTATAGTTAAGGTAATAAGGAACAATCTGCTGAACACTAAATACCTTATAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTGGGAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTTGGAGTCAGGGGTAATAAGGAACAATCTGCTGAACACTAAATACCTTATAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTGGGAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTTGGAGTCAGGGGTAATAAGGAACAATCTGCTGAACACTAAATACCTGGGAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTGGGAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTTGGAGTCAGGGGTAATAAGGAACAATCTGCTGAACACTAAATACCTTATAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTGGGAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTTGGAGTCAGGGGTAATAAGGAACAATCTGCTGAACACTAAATACCTGGGAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTAGGAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTTGGAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTTGGAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTAGGAGTCAGGGGCAATAAGGAACATTCTGCTGAACAATAAATACCTAGGAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTTGGAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTAGGAGTCAGGGGCAATAAGGAACAATATCCTAAAAAACTCAAAGACCACCCTCGAACAAGACAAATTAGATGATTAACAGACAGAGAATCATTACAA
>TU1516682
tctatgtcatggattcacctggtcagtctatgttatgTAAAgatcaggtgttcttaatgttttgtacactgtgtaaaaTCCATGTCAATAGGCTGCAGGGCAGAAAATCATGTTCATTTGGTAGAGGAGAGTGGCCTTGCCTTGAGATAATACAACCACATCTTCATGAAATAGTTATAATTGAATTACACCTACAGTAGGGCTCCTATTAGCTGAATACTACGGTGAGATATAATAAGCCCCGTTTATATAACACCTTATCCATTCCTCAGCCCTTCCACCTCTATTTAAATGTCAACTACTTCAGCATTACATTTGACTATTCACACGATTCAGGAGCGATTAACAAGTCAAGGTAATAAGGAACAATCTGCTGAACACTAAATACCTTATAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTGGGAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTTGGAGTCAGGGGTAATAAGGAACAATCTGCTGAACACTAAATACCTTATAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTGGGAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTGGGAGTCAGGGGCAATAAGGAGCAATCTGCTGAACACTAAATACCTTATAGTTAAGGTAATAAGGAACAATCTGCTGAACACTAAATACCTTATAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTGGGAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTTGGAGTCAGGGGTAATAAGGAACAATCTGCTGAACACTAAATACCTTATAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTGGGAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTTGGAGTCAGGGGTAATAAGGAACAATCTGCTGAACACTAAATACCTGGGAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTGGGAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTTGGAGTCAGGGGTAATAAGGAACAATCTGCTGAACACTAAATACCTTATAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTGGGAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTTGGAGTCAGGGGTAATAAGGAACAATCTGCTGAACACTAAATACCTGGGTTGGTGTGTATAAAAACTCCATCATGCTCATATAGAAC
>TU1516683
tctatgtcatggattcacctggtcagtctatgttatgTAAAgatcaggtgttcttaatgttttgtacactgtgtaaaaTCCATGTCAATAGGCTGCAGGGCAGAAAATCATGTTCATTTGGTAGAGGAGAGTGGCCTTGCCTTGAGATAATACAACCACATCTTCATGAAATAGTTATAATTGAATTACACCTACAGTAGGGCTCCTATTAGCTGAATACTACGGTGAGATATAATAAGCCCCGTTTATATAACACCTTATCCATTCCTCAGCCCTTCCACCTCTATTTAAATGTCAACTACTTCAGCATTACATTTGACTATTCACACGATTCAGGAGCGATTAACAAGTCAAGGTAATAAGGAACAATctgctgaacactaaatacCTGGGAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTAGGAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTTGGAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTTGGAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTAGGAGTCAGGGGCAATAAGGAACATTCTGCTGAACAATAAATACCTAGGAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTTGGAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTAGGAGTCAGGGGCAATAAGGAACAATATCCTAAAAAACTCAAAGACCACCCTCGAACAAGACAAATTAGATGATTAACAGACAGAGAATCATTACAAGGTGGGAGAGAGGCAATCCACCTTTTTTCCACTAGGCTGTGAGCCTCGTCTCAGCCACCAGAACCAAATCTCTCACTGGACGAGCGACCGCTGTCAGCCAGGCTGGCTACGATATGTAAACGTCACGCGCTGCGTCCCGTGAGTGTCCCGTTGTTGCCGCTGGGGGTCGTCCTCAGAGACTAAGTCCTGCTGGTCGTCTGGCGGTGTAGAAGGTTCGGGAGAGTCTGGTCTGTCCGTTCTCTCAGTGTCCTCTGACTGGGATGATGACGCCGTGTCTGTGCCGTCGATGAATCCAAGCATCTCAACCACGGAGTTGGGCAAAT
>TU1516685
tctatgtcatggattcacctggtcagtctatgttatgTAAAgatcaggtgttcttaatgttttgtacactgtgtaaaaTCCATGTCAATAGGCTGCAGGGCAGAAAATCATGTTCATTTGGTAGAGGAGAGTGGCCTTGCCTTGAGATAATACAACCACATCTTCATGAAATAGTTATAATTGAATTACACCTACAGTAGGGCTCCTATTAGCTGAATACTACGGTGAGATATAATAAGCCCCGTTTATATAACACCTTATCCATTCCTCAGCCCTTCCACCTCTATTTAAATGTCAACTACTTCAGCATTACATTTGACTATTCACACGATTCAGGAGCGATTAACAAGTCAAGGTAATAAGGAACAATCTGCTGAACACTAAATACCTTATAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTGGGAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTTGGAGTCAGGGGTAATAAGGAACAATCTGCTGAACACTAAATACCTTATAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTGGGAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTTGGAGTCAGGGGTAATAAGGAACAATCTGCTGAACACTAAATACCTGGGAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTGGGAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTTGGAGTCAGGGGTAATAAGGAACAATCTGCTGAACACTAAATACCTTATAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTGGGAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTTGGAGTCAGGGGTAATAAGGAACAATCTGCTGAACACTAAATACCTGGGTTGGTGTGTATAAAAACTCCATCATGCTCATATAGAAC
>TU1516689
tctatgtcatggattcacctggtcagtctatgttatgTAAAgatcaggtgttcttaatgttttgtacactgtgtaaaaTCCATGTCAATAGGCTGCAGGGCAGAAAATCATGTTCATTTGGTAGAGGAGAGTGGCCTTGCCTTGAGATAATACAACCACATCTTCATGAAATAGTTATAATTGAATTACACCTACAGTAGGGCTCCTATTAGCTGAATACTACGGTGAGATATAATAAGCCCCGTTTATATAACACCTTATCCATTCCTCAGCCCTTCCACCTCTATTTAAATGTCAACTACTTCAGCATTACATTTGACTATTCACACGATTCAGGAGCGATTAACAAGTCAAGGTAATAAGGAACAATctgctgaacactaaatacCTGGGAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTGGGAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTTGGAGTCAGGGGTAATAAGGAACAATCTGCTGAACACTAAATACCTTATAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTGGGAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTTGGAGTCAGGGGTAATAAGGAACAATCTGCTGAACACTAAATACCTGGGAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTAGGAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTTGGAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTTGGAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTAGGAGTCAGGGGCAATAAGG
>TU1516681
ttaatgttttgtacactgtgtaaaaTCCATGTCAATAGGCTGCAGGGCAGAAAATCATGTTCATTTGGTAGAGGAGAGTGGCCTTGCCTTGAGATAATACAACCACATCTTCATGAAATAGTTATAATTGAATTACACCTACAGTAGGGCTCCTATTAGCTGAATACTACGGTGAGATATAATAAGCCCCGTTTATATAACACCTTATCCATTCCTCAGCCCTTCCACCTCTATTTAAATGTCAACTACTTCAGCATTACATTTGACTATTCACACGATTCAGGAGCGATTAACAAGTCAAGGTAATAAGGAACAATctgctgaacactaaatacCTTGGAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTTGGAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTAGGAGTCAGGGGCAATAAGG
>TU1516691
ttaatgttttgtacactgtgtaaaaTCCATGTCAATAGGCTGCAGGGCAGAAAATCATGTTCATTTGGTAGAGGAGAGTGGCCTTGCCTTGAGATAATACAACCACATCTTCATGAAATAGTTATAATTGAATTACACCTACAGTAGGGCTCCTATTAGCTGAATACTACGGTGAGATATAATAAGCCCCGTTTATATAACACCTTATCCATTCCTCAGCCCTTCCACCTCTATTTAAATGTCAACTACTTCAGCATTACATTTGACTATTCACACGATTCAGGAGCGATTAACAAGTCAAGGTAATAAGGAACAATctgctgaacactaaatacCTTGGAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTTGGAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTAGGAGTCAGGGGCAATAAGGAACATTCTGCTGAACAATAAATACCTAGGAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTTGGAGTCAGGGGCAATAAGGAACAATCTGCTGAACACTAAATACCTAGGAGTCAGGGGCAATAAGGAACAATATCCTAAAAAACTCAAAGACCACCCTCGAACAAGACAAATTAGATGATTAACAGACAGAGAATCATTACAAGGTGGGAGAGAGGCAATCCACCTTTTTTCCACTAGGCTGTGAGCCTCGTCTCAGCCACCAGAACCAAATCTCTCACTGGACGAGCGACCGCTGTCAGCCAGGCTGGCTACGATATGTAAACGTCACGCGCTGCGTCCCGTGAGTGTCCCGTTGTTGCCGCTGGGGGTCGTCCTCAGAGACTAAGTCCTGCTGGTCGTCTGGCGGTGTAGAAGGTTCGGGAGAGTCTGGTCTGTCCGTTCTCTCAGTGTCCTCTGACTGGGATGATGACGCCGTGTCTGTGCCGTCGATGAATCCAAGCATCTCAACCACGGAGTTGGGCAAAT

Function

NR:

description
TBC1 domain family member 15-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036244.1 False 1437 mRNA 0.42 2 77416587 77418206
TU1516682 False 1304 lncRNA 0.41 3 77416342 77505819
TU1516683 False 1132 lncRNA 0.45 2 77416342 77418529
TU1516685 False 983 lncRNA 0.41 3 77416342 77505819
TU1516689 False 870 lncRNA 0.41 2 77416342 77417991
TU1516681 False 449 lncRNA 0.40 2 77416395 77417991
TU1516691 True 987 lncRNA 0.45 2 77416395 77418529
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118938861 grip1 coding upstream 945770 75732149 ~ 76472933 (+)
LOC118938860 NA coding upstream 2044524 75366958 ~ 75372063 (+)
LOC110499731 dyrk2 coding upstream 2050398 75332550 ~ 75366189 (+)
LOC118938859 LOC106593189 coding upstream 2143980 75251801 ~ 75272607 (+)
LOC118938933 ifngamma1 coding upstream 2187722 75224113 ~ 75228865 (+)
LOC118938903 NA coding downstream 392635 77810841 ~ 77812644 (+)
LOC110490691 arhgef39 coding downstream 540765 77958971 ~ 78066964 (+)
rergla LOC106609822 coding downstream 677325 78095531 ~ 78107017 (+)
il17r il17r coding downstream 704876 78123082 ~ 78148831 (+)
LOC118938866 LOC108426397 coding downstream 807668 78225874 ~ 78277603 (+)
G1327818 NA non-coding upstream 1933 77412033 ~ 77414654 (+)
G1327580 NA non-coding upstream 74040 77338182 ~ 77342547 (+)
G1327578 NA non-coding upstream 84610 77331562 ~ 77331977 (+)
G1327574 NA non-coding upstream 96309 77319994 ~ 77320278 (+)
G1327567 NA non-coding upstream 114327 77301724 ~ 77302260 (+)
G1327845 NA non-coding downstream 69881 77488087 ~ 77489627 (+)
G1327846 NA non-coding downstream 72687 77490893 ~ 77491311 (+)
G1327850 LOC106576658 non-coding downstream 80668 77498874 ~ 77499792 (+)
G1327857 NA non-coding downstream 97090 77515296 ~ 77515881 (+)
G1327858 NA non-coding downstream 97697 77515903 ~ 77516177 (+)
G1327379 NA other upstream 603299 76809860 ~ 76813288 (+)
G1327230 NA other upstream 826702 76587574 ~ 76589885 (+)
G1326605 NA other upstream 1531440 75884811 ~ 75885147 (+)
G1326586 NA other upstream 1610068 75805999 ~ 75806519 (+)
G1326503 cand1 other upstream 1818072 75593591 ~ 75598515 (+)
G1328201 NA other downstream 651823 78070029 ~ 78070403 (+)
LOC118936267 mrps33 other downstream 1331172 78749330 ~ 78763988 (+)
LOC118938871 braf other downstream 1362125 78780201 ~ 78826735 (+)
G1328968 NA other downstream 1620398 79038604 ~ 79039457 (+)
G1327849 NA non-coding downstream 11585 77517404 ~ 77518996 (+)
G1327859 NA non-coding downstream 13440 77519259 ~ 77522787 (+)
G1327860 NA non-coding downstream 19098 77524917 ~ 77525643 (+)

Expression

LOC118938862 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 25.
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LOC118938862 Expression in each Bioproject

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LOC118938862 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
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Co-expression Network