LOC110516314


Basic Information

Item Value
gene id LOC110516314
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 77575197 ~ 77581151 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036246.1
GGAGCGTATTTGAAACACCACTTTCGAAATGTCCTATTTGACACGACCTCAGCTGATCGTTACTAAACTAACTGGATCTCAAGCCTCGTCTACTTTTTCCTACTTGTTACACGATTGTGGctaataagatttttttttaagaagGCTTTCTGCAGAGAAAATGAGCTCTGGAAAAGCACTACAGTCAGTGTCTCCTCACAACAATCAACCGCCGCCGACACCAAGCCTGGCGAAAAGAAAGAAGATTCAAGAGAAGTCTGCAATAAGGAGTCCAACAGACAGTGTGATGTCCCCATGTACAAGACAGCTCATGAAGAAAGCTATCAAGGACATACCGTCATCTCCCAGACCCAGACGGGAAGCGAAAGAGAACACTGCAAATAAATGAATGACCTTTTTATGTACAGTGTGATGTCTTTACGGTATTCCTCTCTCTGCTAAGATGGTCAGATCAATCAATCATTGACACTTTCCTGACATTATATACCGTCTTTTTAAGATGTTCTTACTAACCAAGCTGCTCACACTTTATTGATCCATTATGCAAtatgggggggagggggttaTATTCTTCATCAATATGGTGTatatggggggagggggttaTATTCTTCATCAATATGGTGTAtatggtggagggggttatattcTTCATCtatatggggggagggggggggggtgtatattcTTAATCTAAATTGCACTGTTCGGGTTTATTGTTATTCTTGTGAATGTATAATGCTATTTGCACTTTAGAGGACATATGCTGTTCATTGTACACTGCTTTAAGTGGTGGGGGTGTTATCTCAAACAAGTGTTCTGTATGTGTGCCCTTTGCACAGGTAGCCTTCCATGGTTtaagaaaataaaacaaaaagtagaCTACTTTATATTCTGTTTGTACATTGGCTTTATGTTGCTTTCAATAAACATATTTGATATGGAAGAGA
>TU1516809
GACCTCAGCTGATCGTTACTAAACTAACTGGATCTCAAGCCTCGTCTACTTTTTCCTACTTGTTACACGATTGTGGctaataagatttttttttaagaagGCTTTCTGCAGAGAAAATGAGCTCTGGAAAAGCACTACAGTCAGTGTCTCCTCACAACAATCAACCGCCGCCGACACCAAGCCTGGCGAAAAGAAAGAAGATTCAAGAGAAGTCTGCAATAAGGAGTCCAACAGACAGTGTGATGTCCCCATGTACAAGACAGCTCATGAAGAAAGCTATCAAGGACATACCGTCATCTCCCAGACCCAGACGGGAAGCGAAAGAGAACACTGCAAATAAATGAATGACCTTTTTATGTACAGTGTGATGTCTTTACGGTATTCCTCTCTCTGCTAAGATGGTCAGATCAATCAATCATTGACACTTTCCTGACATTATATACCGTCTTTTTAAGATGTTCTTACTAACCAAGCTGCTCACACTTTATTGATCCATTATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036246.1 False 950 mRNA 0.40 4 77575197 77581151
TU1516809 True 500 lncRNA 0.42 4 77575603 77581107

Neighbor

gene id symbol gene type direction distance location
LOC110490591 LOC106609839 coding downstream 1013 77521812 ~ 77574184 (-)
rab21 NA coding downstream 38985 77533131 ~ 77536232 (-)
LOC118936539 LOC106597902 coding downstream 59985 77514286 ~ 77515212 (-)
LOC110515635 LOC106576658 coding downstream 68395 77418263 ~ 77506802 (-)
LOC118938902 NA coding downstream 222747 77351278 ~ 77352450 (-)
trnak-cuu-8 NA coding upstream 398 77581549 ~ 77581621 (-)
LOC110511982 tmem19 coding upstream 2715 77583866 ~ 77609486 (-)
trnak-cuu-9 NA coding upstream 4939 77586090 ~ 77586162 (-)
trnak-cuu-10 NA coding upstream 5568 77586719 ~ 77586791 (-)
trnak-cuu-11 NA coding upstream 6495 77587646 ~ 77587718 (-)
G1327946 NA non-coding downstream 11960 77562758 ~ 77563237 (-)
G1327945 NA non-coding downstream 30609 77542432 ~ 77544588 (-)
G1327903 NA non-coding downstream 56804 77517464 ~ 77518393 (-)
G1327927 NA non-coding downstream 93916 77480922 ~ 77481281 (-)
trnak-cuu-19 NA non-coding upstream 6226 77587377 ~ 77598491 (-)
G1327955 NA non-coding upstream 10942 77592093 ~ 77594387 (-)
G1327956 NA non-coding upstream 34086 77615237 ~ 77615439 (-)
G1327957 NA non-coding upstream 34461 77615612 ~ 77615813 (-)
G1327959 NA non-coding upstream 34992 77616143 ~ 77616574 (-)
G1326996 NA other downstream 1576197 75998506 ~ 75999000 (-)
G1326164 NA other downstream 2521840 75052749 ~ 75053357 (-)
G1326095 NA other downstream 2801244 74772299 ~ 74773953 (-)
G1326070 NA other downstream 2851797 74722589 ~ 74723400 (-)
G1328123 NA other upstream 290128 77871279 ~ 77874604 (-)
LOC118938867 LOC106576670 other upstream 717425 78298576 ~ 78452504 (-)
G1328815 NA other upstream 1181948 78763099 ~ 78766048 (-)
G1328861 NA other upstream 1289174 78870325 ~ 78871031 (-)
G1328892 NA other upstream 1344763 78925914 ~ 78926137 (-)

Expression


Co-expression Network