XLOC_031659


Basic Information

Item Value
gene id XLOC_031659
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 68813923 ~ 68816110 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062151
CCTAGTCAAACCGATCTTGGCTAATGTAGGCCGATAAAAGTCCAGTCGCTTTTAATGGCAAAAATTTTGatgaaaaaatcttaatttttttttataaggacCAATCGTTTCACTTCACAAGAGCTCAACGTGTCATCAGGAGCCACGGCTATTGATTTAGactcatttgcatgtgtttagtTTAATctgaaaaacctgtaaccatccacTGCCATTATAAGAGTCaccaaaaaaaacacagattcagctcaaaatctaCTAAGGAATTAAAGTCGCCTTCATCTTAGATGGCCTGCGGGTGAATAAGTTAACAGGaagttttcatttctgggtgaactgtccttttaaagtGTTTTGCAGTTCAGCAAGGCACTTTTTACACACgaggtcattttaaaaatatggttTCACCAGCTCCTATACATCCGCACTGCATCTTATAAACTTCCAGATTAATGaaaatgtgttcatatatgctAAATCCCCACACGAATCAGGACAAGAATGAAGGTAAAGTTGTCATTTATACATCAATCTACTGTTCTGATGTAGTCCTTGTCGATGCCGTTGGTATTAATTTCAGACAAAGCTCCAGCAGTTTGCTCGGTTATGTATAACCATGCGTTTTGACATCTGCCTTTTCCTTGTACACTCATTAATATTTATATCAAACAGCAGTATTGATATAAGAGTTTCATCATTTTCTCTGTTGGTGCTCGTGATATGAGGCAAACAGAACTGATTTGTGTCCAC

Function

GO:

id name namespace
GO:0022607 cellular component assembly biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0030163 protein catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0043632 modification-dependent macromolecule catabolic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0006457 protein folding biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0010498 proteasomal protein catabolic process biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0019941 modification-dependent protein catabolic process biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0043248 proteasome assembly biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005839 proteasome core complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0101031 chaperone complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0000502 proteasome complex cellular_component
GO:1902494 catalytic complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0070003 threonine-type peptidase activity molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0031369 translation initiation factor binding molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062151 True 753 lncRNA 0.37 2 68813923 68816110

Neighbor

gene id symbol gene type direction distance location
XLOC_031658 her1 coding downstream 18860 68788658 ~ 68795063 (-)
XLOC_031657 mepce coding downstream 31282 68765883 ~ 68782641 (-)
XLOC_031656 NA coding downstream 145381 68622098 ~ 68668542 (-)
XLOC_031654 dlg4a coding downstream 172570 68529728 ~ 68641353 (-)
XLOC_031655 LO017735.1 coding downstream 195834 68617958 ~ 68618089 (-)
XLOC_031660 C5H2orf68 coding upstream 924 68817034 ~ 68826177 (-)
XLOC_031661 sftpbb coding upstream 28938 68845048 ~ 68876211 (-)
XLOC_031662 NA coding upstream 74367 68890477 ~ 68893011 (-)
XLOC_031663 ank1a coding upstream 83363 68899473 ~ 69041102 (-)
XLOC_031664 dre-mir-2188 coding upstream 205749 69021859 ~ 69021962 (-)
XLOC_031650 CABZ01083943.1 non-coding downstream 599589 68205952 ~ 68214334 (-)
XLOC_031644 NA non-coding downstream 841581 67964507 ~ 67972342 (-)
XLOC_031627 BX897741.1 non-coding downstream 1649504 67161442 ~ 67164419 (-)
XLOC_031669 FQ311924.2 non-coding upstream 503868 69319978 ~ 69351280 (-)
XLOC_031681 CT978957.3 non-coding upstream 840284 69656394 ~ 69656508 (-)
XLOC_031682 NA non-coding upstream 861963 69678073 ~ 69696089 (-)

Expression


Co-expression Network