LOC110499734 (LOC106609838)


Basic Information

Item Value
gene id LOC110499734
gene name LOC106609838
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 77601746 ~ 77606021 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945431.1
acagatttttaccttgtcagctcggggattcgatccagcaacctttcggttactggcccaacgctctaactactaggctccctgccgccccaatatgaCAAATATGGGAAAAAAAATAGTTGTTGTGTGTTGATGCAATGTCTTCCACTATATTCTCAATCCCTCGTGGGACCAAATGCTTATCTATTGGTCCTGTGGTGACTCGCCTACTCAGGAATGGAAGGTGCTCAACCAACAAGTCTGAACGGTTTACAACGGCTGCCTGGGGGGGGAATTACTTAGACTGAAGTACAGTCCTTCAGTGTAACCAGGTCTGCACACGGAATAGGAGCTTCCCTTAAACAGACTCACTTGGCGTTGAGGACTCTGGAGGACTGCTTTTCCTTCTTAAGGATTCGGACAGGATCAGGCTTTGACTGTAAAAAGGGGGACAGGTTTTGCCAGTTCATATTATGGAAGATGATCTTCTGAATGATAACTGCACAGCAGACAATCTGCCCTTGTATACATTCTACGCCTCTGTGATGATTGTGGAGTTCATCCTGGCTCTGCCTCTTAACCTCTCAGTGCTTTACCTCTTCATCTTCAAGCTGGAGTTCTGGAAACTGAACTCCAACAACCTTTTCCTGTTCAATCTCGTGTTGGCTGACCTTCTTCTGCTGGGCTGTTTGCCAGTGAACGCCTACAATTTTCTTCGCGGAGAGAGGCAGAGTGTGGACGGAAAGATCTGCAAAGCCATGCTCTTCATGCTGTTTCTGAACCGAGGCGCCAGTATCGGCTTCCTGGCTGTGATTTCACTCGATCGCTACTTCAACGTGGTTCATCCTGGGAACAAGGACTTTGTCCTCAAAAAGTCCCCTCATATATCTGTCGTCATCTGGCTAGTACTGCTCCCTTTGACTATCCCCACCATGCTGAAGACCGGCTGCTGTGGCAGTCATGGGGACATCACTGACACTCTGAGAGAGGTTGTGTTTTTCACCCAGATTCTCATCCCTTTCTTTGTGTTGGTGTACTGCACGGTCCGCATTGTCAACAGACTCAACAAGAAGACAGTAGGTGACAGGACCAAGCTGCGTCGAGCAGTGTTTCTGGTCACCTCTGTCATACTGGTCTTTTCTTTCTGTTTCCTGCCTTGTACCATCGCTAGAATTGTTCTGTTGATTGTCAGAGCCATGGATTTAGAGAATGCTGAGAATATAGCTATTCAGGTCTATGATGGTTTCATAGTTTTTTCCCACATGGACTGTCTAGTGGACCCAATTGTGTACTGTTTAAGCAGCACTAAGTTCAAACACCTCTACCTGACAACGTATTGCCCCTGTCTACTGAGAAACAACGCAGAAACGGTTGAAAGAACAAACCCGACACGAACCAACTTAAATCTAAAACGCAACAACAACACACTGTAGCTAGTAGTCTAAAACGCAACAACAACACACTGTAGCTAGTAGGTAATGATACTTCTGGGTGtgggtgtggttgtggttgtgggtGTGGTCGTGGGCGTGGCCACAGTTTTTAAAGAGTTTCTTGCAGTTATACACTTTCATGGGGctgagaatgttttttttttatttttttttatttattttaaagataatttcctgcaattctacacattttaccatggctTATGTCGTATAACtaaaactttgttaaaacaagtctgTGGCCCCATGCCaggacattttttaaaaacattttagatTCTCTCTGTGTAGTTTTTTATTTTGGTGAtggttagttctcaaagatgatcttatTTAAAAAAGATATCGCTCCgtttatcttttctacatactttctaTCTGGTTTTAGTCGTTTTAAGTTCACACTGAAAACGTTTTCACCATGTTGATCTGTTTTGATGTGGCGGCCCGCCGCTgctaaatgaatataggggaaGCACTGGCATGTTCAGCTTTTGTTTGCCAAATCAGACTGTGATTCAATACTGGTTTCTGTTCTGATCAGTCATCGGTTTCGTTCACCTGTGATATCATCATGTTACACAGATCATCATGATGCTGTTAATAATGGTCTGTGTCAAATAAATATTCTCCTCAAATGATGCTCCCATAAAAATgattgttactactactaccaccaagacaacaacagctgaTAGGAGCTACCCCCTCCTCCCTTGGAGAGGTAAGACCACattatctactactactactactactactactactactactaccaccaagacaacaacagctgaTAGGAGCTACCCCCTCCTCCATTGGAGAGGTAAGACCacattatatactactactactactactactactactactaccaccaagacaacaacagctgaTAGGAGCTACCCCCTCCTCCATTGGAGAGGTAAGACCacattatatactactactactactactactactactaccactaccactaccactaccactaatacTATAACTACAACAGCTGATAGGAGCTACCCCCTCCTCCCTTGGAGAGGTAAGatcacactactactactaccactactactagtactacaacAGCTGATAGGAGCTACCCCCTCCTCCCTTGGCGAGGTAAGACCacattatatactactactactactactactactactactactaccactaccactaccactaccactaatacTATAACTACAACAGCTGATAGGAGCTACCCCCTCCTCCCTTGGAGAGGTAAGACCacattatatactactactactactactactactactactactactaccaccaagacaacaacagctgaTAGGAGCTACCCCCTCCTCCCTTGGCGAGGTAAGACCACATTATATActattactactagtactactactactactgctactactaccactagtacTACAACAGCTGATAGGAGGTACCCCCTCCTCCCTTGGCGAGGTAAGACCacattatatactactactactactactactactactactactactaccaagacaacaacagctgaTAGGAGCTACCCCCTCCTCCCTTGGAGAGGTAAGACCacattatatactactactactactactactactactactactactactactactactaccaagacaacaacagctgaTAGGAGCTACCCCCTCCTCCCTTGGAGAGGTAAGACCacattatatactactactactactactactactactactactactactactactaccaagacaacaacagctgaTAGGAGCTACCCCCTCCTCCCTTGGCGAGGTAAGACCacattatatactactactactactactactactactactactactactactactactactaccaagacaacaacagctgaTAGGAGCTACCCCCTCCTCCCTTGGAGAGGTAAGACCacattatatactactactactactactactactactactactactactaccaccaagacaacaacagctgaTAGGAGCTACCCCCTCCTCCCTTGGCGAGGTAAGATCacattatatactactactactactactactactactactactactaccaagacaacaacagctgaTAGGAGCTACCCCCTCCTCCCTTGGAGAGGTAAGACCacattatatactactactactactactactactactactactactaccaccaagacaacaacagctgaTAGGAGCTACCCCCTCCTCCATTGGAGAGGTAAGACCacattatatactactactactactactactactactactactactactactaccaccaagacaacaacagctgaTAGGAGCTACCCCCTCCTCCATTGGAGAGGTAAGACCacattatatactactactactactactactactactactactactactactactactaccaagacaacaacagctgaTAGGGGCTACCCCCTCCTCCCTTGGAGAGGTAAGatcacactactactactaccactactactagtactacaacAGCTGATAGGAGCTACCCCCTCCTCCCTTGGCGAGGTAAGACCacattatatactactactactactactactaccactaccactaccactaccactaatacTATAACTACAACAGCTGATAGGAGCTACCCCCTCCTCCCTTGGCGAGGTAAGACCacattatatactactactactactactactactactactactactactactaccaccaagacaacaacagctgaTAGGGGCTACCCCCTCCTCCCTTGGAGAGGTAAGatcacactactactactactaccactactactagtactacaacAGCTGATAGGAGCTACCCCCTCCTCCCTTGGAGAGGTAAGAC

Function

NR:

description
12-(S)-hydroxy-5,8,10,14-eicosatetraenoic acid receptor-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945431.1 True 4276 mRNA 0.44 1 77601746 77606021

Neighbor

gene id symbol gene type direction distance location
trnak-cuu-19 NA coding downstream 3422 77587377 ~ 77598491 (-)
trnak-cuu-18 NA coding downstream 5859 77595815 ~ 77595887 (-)
trnak-cuu-17 NA coding downstream 6786 77594888 ~ 77594960 (-)
trnak-cuu-16 NA coding downstream 7954 77593720 ~ 77593792 (-)
trnak-cuu-15 NA coding downstream 8842 77592832 ~ 77592904 (-)
LOC110490866 NA coding upstream 66449 77672463 ~ 77673862 (-)
LOC110490687 LOC105023115 coding upstream 69424 77675445 ~ 77794866 (-)
LOC118938863 NA coding upstream 418422 78024443 ~ 78024930 (-)
LOC118938864 LOC106576660 coding upstream 542952 78148973 ~ 78157083 (-)
LOC118938865 mkrn1 coding upstream 553770 78159791 ~ 78194251 (-)
G1327955 NA non-coding downstream 7359 77592093 ~ 77594387 (-)
LOC110516314 NA non-coding downstream 20639 77575197 ~ 77581151 (-)
G1327946 NA non-coding downstream 38509 77562758 ~ 77563237 (-)
G1327945 NA non-coding downstream 57158 77542432 ~ 77544588 (-)
G1327956 NA non-coding upstream 9216 77615237 ~ 77615439 (-)
G1327957 NA non-coding upstream 9591 77615612 ~ 77615813 (-)
G1327959 NA non-coding upstream 10122 77616143 ~ 77616574 (-)
G1327964 NA non-coding upstream 19901 77625922 ~ 77626185 (-)
G1327965 NA non-coding upstream 20339 77626360 ~ 77626605 (-)
LOC110515635 LOC106576658 other downstream 94972 77418263 ~ 77506802 (-)
G1326996 NA other downstream 1602746 75998506 ~ 75999000 (-)
G1326164 NA other downstream 2548389 75052749 ~ 75053357 (-)
G1326095 NA other downstream 2827793 74772299 ~ 74773953 (-)
G1326070 NA other downstream 2878346 74722589 ~ 74723400 (-)
G1328123 NA other upstream 265258 77871279 ~ 77874604 (-)
LOC118938867 LOC106576670 other upstream 692555 78298576 ~ 78452504 (-)
G1328815 NA other upstream 1157078 78763099 ~ 78766048 (-)
G1328861 NA other upstream 1264304 78870325 ~ 78871031 (-)
G1328892 NA other upstream 1319893 78925914 ~ 78926137 (-)

Expression


Co-expression Network