LOC110490866


Basic Information

Item Value
gene id LOC110490866
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 77672463 ~ 77673862 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036247.1
tctctccccctcttcatcctctctctctctcttcatcctctctccctctcttcatcctctctgtctcttcatcctctctccctctcctcctctcctcccttgctGGTCACAGGTCATATCTACCTTTACCTCAGAGCTCTCCAGCACTTAGAACTAGGAAAATTAGGGACTTCAATGCTGGTTCAGTGTAGCAACCTTGTGAAACAACCACAAAGTCTTGGCATGGCCCCTCCTTTGTCCTTGTGTGGATGAATTAAGGAGCGAGATGTCATTACTTATAAAGCGAATTGCTCATGGAAATCTAAAAATGTAATCAACCTTCTTTGCCATTCCTGAAAACTCTGCTGCTCGTGGTCTGTCAAAAACCTTGCTGTCTGTGAGTTAGTTTTCTGCtttaggctgtctgtctgtgagttagttctctctctctctctctctctctctctctctctctctctcaacaaaaCACAAACTCGCTGTAATGAACCTTCCTGTGGCCATTCCTCCATGTGACATGCTGAAGATagagagcagagaaggagagacatCCTTGTCTCAGGGTCTTTCCTAGGTGTGTGACATGGTTAAAAAAGAGAGGTGGATAGGCTGaatctgggtcgtgttcattagggcacaccgtagcaaaactgTTTTTACTTTCTTGCAACAGAGGTGGATGGGCTGaatctgggttgtgttcatttggCCACAAAGTAGCCAAATGTTTCTGTTACAAACTACCAGATACTGGGGTAGCTGTATGAGTCCACTGTCAAATGTGACACATCCTCTTTCTTTTCTTCctcttgtttttctctctctccatcgttaCCCAGATTCAGAATTTGGAGgcaaaagctatttttttattaTCTTGAGCTCTTAAAATACCAgaattgtataaaaaaaaatatatagatgagTATTTATACCAAAAGTATATTATGTAAAGTAAAGGGTCCCTGAGGAGGAGGTCTGATGGAGGCCTGGCGCATGCTCTGCAGATTGTAGGTAGTAGGCCTAGCTAGCCAGGTTGAGCTAGCCTAGCGTCCCGTTGGCTAGCCAGGTTTAGCTAGCCTAGCGTCCCGTTGGCTAGCCAGCTTTAGCTAGCCTAGCGTCCCGTTGGCTAGCCAGGTTTAGCTAGCCTAGCGTCCCGTTGGCTAGAGGCTGTGTGTACATTACATTCATAGGGCCAGTGAATAGAATGCATATTTTGTTTTTATATCAGAGTGTTAAATCCGTGTAATATGTAATAAACAACTTTACCAAATGA
>TU1516981
ctcttcatcctctctccctctcctcctctcctcccttgctGGTCACAGGTCATATCTACCTTTACCTCAGAGCTCTCCAGCACTTAGAACTAGGAAAATTAGGGACTTCAATGCTGGTTCAGTGTAGCAACCTTGTGAAACAACCACAAAGTCTTGGCATGGCCCCTCCTTTGTCCTTGTGTGGATGAATTAAGGAGCGAGATGTCATTACTTATAAAGCGAATTGCTCATGGAAATCTAAAAATGTAATCAACCTTCTTTGCCATTCCTGAAAACTCTGCTGCTCGTGGTCTGTCAAAAACCTTGCTGTCTGTGAGTTAGTTTTCTGCtttaggctgtctgtctgtgagttagttctctctctctctctctctctctctctctctctctctctcaacaaaaCACAAACTCGCTGTAATGAACCTTCCTGTGGCCATTCCTCCATGTGACATGCTGAAGATagagagcagagaaggagagacatCCTTGTCTCAGGGTCTTTCCTAGGTGTGTGACATGGTTAAAAAAGAGAGGTGGATAGGCTGaatctgggtcgtgttcattagggcacaccgtagcaaaactgTTTTTACTTTCTTGCAACAGAGGTGGATGGGCTGaatctgggttgtgttcatttggCCACAAAGTAGCCAAATGTTTCTGTTACAAACTACCAGATACTGGGGTAGCTGTATGAGTCCACTGTCAAATGTGACACATCCTCTTTCTTTTCTTCctcttgtttttctctctctccatcgttaCCCAGATTCAGAATTTGGAGgcaaaagctatttttttattaTCTTGAGCTCTTAAAATACCAgaattgtataaaaaaaaatatatagatgagTATTTATACCAAAAGTATATTATGTAAAGTAAAGGGTCCCTGAGGAGGAGGTCTGATGGAGGCCTGGCGCATGCTCTGCAGATTGTAGGTAGTAGGCCTAGCTAGCCAGGTTGAGCTAGCCTAGCGTCCCGTTGGCTAGCCAGGTTTAGCTAGCCAGGTTTAGCTAGCCTAGCGTCCCGTTGGCTAGCCAGGTTTAGCTAGCCTAGCGTCCCGTTGGCTAGCCAGCTTTAGCTAGCCTAGCGTCCCGTTGGCTAGCCAGGTTTAGCTAGCCTAGCGTCCCGTTGGCTAGAGGCTGTGTGTACATTACATTCATAGGGCCAGTGAATAGAATGCATATTTTGTTTTTATATCAGAGTGTTAAATCCGTGTAATATGTAATAAACAACTTTACCAAATGAGCGTAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036247.1 False 1273 mRNA 0.44 2 77672470 77673862
TU1516981 True 1264 lncRNA 0.44 2 77672463 77673798

Neighbor

gene id symbol gene type direction distance location
LOC110511982 tmem19 coding downstream 62984 77583866 ~ 77609486 (-)
LOC110499734 LOC106609838 coding downstream 66449 77601746 ~ 77606021 (-)
trnak-cuu-19 NA coding downstream 74146 77587377 ~ 77598491 (-)
trnak-cuu-18 NA coding downstream 76583 77595815 ~ 77595887 (-)
trnak-cuu-17 NA coding downstream 77510 77594888 ~ 77594960 (-)
LOC110490687 LOC105023115 coding upstream 1583 77675445 ~ 77794866 (-)
LOC118938863 NA coding upstream 350581 78024443 ~ 78024930 (-)
LOC118938864 LOC106576660 coding upstream 475111 78148973 ~ 78157083 (-)
LOC118938865 mkrn1 coding upstream 485929 78159791 ~ 78194251 (-)
LOC118938867 LOC106576670 coding upstream 625470 78298576 ~ 78452504 (-)
G1327991 NA non-coding downstream 23495 77648745 ~ 77648975 (-)
G1327989 NA non-coding downstream 23836 77648404 ~ 77648634 (-)
G1327985 NA non-coding downstream 26264 77645944 ~ 77646206 (-)
G1327977 NA non-coding downstream 32609 77639465 ~ 77639861 (-)
G1327970 NA non-coding downstream 38071 77634145 ~ 77634399 (-)
G1328045 NA non-coding upstream 347 77674209 ~ 77674727 (-)
G1328073 NA non-coding upstream 106569 77780431 ~ 77781694 (-)
G1328089 NA non-coding upstream 139159 77813021 ~ 77813310 (-)
G1328091 NA non-coding upstream 146902 77820764 ~ 77821245 (-)
LOC110515635 LOC106576658 other downstream 165696 77418263 ~ 77506802 (-)
G1326996 NA other downstream 1673470 75998506 ~ 75999000 (-)
G1326164 NA other downstream 2619113 75052749 ~ 75053357 (-)
G1326095 NA other downstream 2898517 74772299 ~ 74773953 (-)
G1326070 NA other downstream 2949070 74722589 ~ 74723400 (-)
G1328123 NA other upstream 197417 77871279 ~ 77874604 (-)
G1328815 NA other upstream 1089237 78763099 ~ 78766048 (-)
G1328861 NA other upstream 1196463 78870325 ~ 78871031 (-)
G1328892 NA other upstream 1252052 78925914 ~ 78926137 (-)

Expression


Co-expression Network