LOC110490691 (arhgef39)


Basic Information

Item Value
gene id LOC110490691
gene name arhgef39
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 77958971 ~ 78066964 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945433.1
TTGACGCCCTGCTACGTCACAAGGCTGGGCGGGTCCGTTTCCATAGCCCCTGGGGGACCGGGAGCCAATAGCGTCGCTTGACAACCCGGAAGAAACAGCAGCCCGAAAAGAGCGCCTGGATTTCAATTTTAGAACAGATACGAAGACATTGACAGTTCTGATCTGAGGTCAGTGTCCGCCCCAGTAGACCATGAGTTTCTCCCCCACCCCCGTGGGCCCGCCCGGCAGCCGTAGTGtccaggagcagagagagaagtgggagaggaagagaaccCGTACAGTCAGGGCCCTGGTCCAAACTGAACAGAAATACTGTAAACAACTACAACTAGTCAACACGTACTTTGTGGAGATTCTGAAGGCCAAAGGCACCCTGAGGCAGGACATTAGAGAAAGCATCTTCAGTTCCATTCCATCCGTCTATTCAGTAAACCAGACGTTGTTGGTCCGTCTGGAGAACGGGGACTTGGGCCGTGGATTTGATGACTTCTGTCCTCACCTCCACCACTACGTTACCTACGTAGACAACATCCAGAACGCCAGCAAGGTCCTGGCGCTCCAGGTAAAGAAGAACAAAGCCTTTAGAAGGTTTAAGAAGCTCCAGGAGTCCAGACCAGAGTTCCTCAACTGTAAACTAGAGGACCTCCTCCCACTGCCCATACAGCGCATCCAACAGTACAATCATTTCTTACGGGATCTGTCAGAGAACACGAGTCCAGATTACCCAGAGTTCCAACCGCTTTCAAGGTCGGTGAAGCTGATCTCTGAGGTATCCCAGCGTATCCAGGACAACGCCCGCAGCCATGACAACCACCTGCAGCTGCGGCGGGTGCAGAGACTGCTGAAGGGGAGAAAGACCAAGGTGGAAGCTCCAGGACGCTGGTACCTGCGTGAGGGCTGGCTGCGTACCGTCCCCCCTAAAGGAGCAGAGGTCAAACCCAAGATGTTCTTCCTGTTTAGTGATGTCCTTCTCCAAGCCAAGCCCTGCCACCCTCTCCATCCCACCAACGGAGATAAGTTTGCTGGCCAGAGAGTCTACCCACTGAAGGACTGTACTGTGGACAAGGTGTTTGGGCACACCCAGAGCCAGGGCGGCCTTCTCAGTtTGACCTTCCCTAAAGCCAAGCTGCTGCTGATGTCCAGCGATCAGGAAGATATCAACGACTGGTATTACAGCCTGAGCTCTGCTGTAGGCCAGTTGAAGTCCAGGAACACAGTGGTCCATCAGAGAGATGATCTGGTCAGGAGACCTCTACGCTGCTTTGTAGAGGACCAGAAGAACCAAACTACCCCcaccacaccacccaccacctccaccccagggaggaagaggatggcCCCCCCTCCACCCCAGACCCCCTCCAGACCTACCGCTCCAGCAGAAGCAGAGGGAAGCGCCTCCAAGAGGATGAAGCTGACTGGGGGGCCAGCTGAGAGTGAATCGGCCAGGTCAAGCTGTGTGATCCTGTGAAGGACCAAGAACTTCAGAGATCCTTGCTCTTTCACACAAACCAATCAAGTCTGACAGATAAGCGTTAATGGGGGGGATATGAGGAGAGATTAGAGGTAGTTAGATACTGGAGAATCAGGTtaatggggagagatgggaggtagTTAGAtatgaggagagatgggaggtagTTAGATACTGGAGAATTAGGTTaatgggagagatgggaggtaGTTAGATACTGGAGAATTAGGTTAATTGGGAGAGATGGGAGGTAGTTAGAtatgaggagagatgggaggtagTTAGAtatgaggagagatgggaggtagTTAGAtatgaggagagatgggaggtagATACTGGAGAATCAGGTTAACGGTGGGATATGAGGAGAGATGCAAGGTAGTTAGATGATATGAAATGTGAAGATTTTAACACTGATGCCAAAGACACTTTGAAACACCTTCACGATAGAAGCTCCAGCAGATGGAAAATGTGAGATTTGACTCTGAAATAAATGAATGTTTTGTCCTGAA
>XR_005036248.1
TTGACGCCCTGCTACGTCACAAGGCTGGGCGGGTCCGTTTCCATAGCCCCTGGGGGACCGGGAGCCAATAGCGTCGCTTGACAACCCGGAAGAAACAGCAGCCCGAAAAGAGCGCCTGGATTTCAATTTTAGAACAGATACGAAGACATTGACAGTTCTGATCTGAGGTCAGTGTCCGCCCCAGTAGACCATGAGTTTCTCCCCCACCCCCGTGGGCCCGCCCGGCAGCCGTAGTGtccaggagcagagagagaagtgggagaggaagagaaccCGTACAGTCAGGGCCCTGGTCCAAACTGAACAGAAATACTGTAAACAACTACAACTAGTCAACACGTACTTTGTGGAGATTCTGAAGGCCAAAGGCACCCTGAGGCAGGACATTAGAGAAAGCATCTTCAGTTCCATTCCATCCGTCTATTCAGTAAACCAGACGTTGTTGGTCCGTCTGGAGAACGGGGACTTGGGCCGTGGATTTGATGACTTCTGTCCTCACCTCCACCACTACGTTACCTACGTAGACAACATCCAGAACGCCAGCAAGGTCCTGGCGCTCCAGGTAAAGAAGAACAAAGCCTTTAGAAGGTTTAAGAAGCTCCAGGAGTCCAGACCAGAGTTCCTCAACTGTAAACTAGAGGACCTCCTCCCACTGCCCATACAGCGCATCCAACAGTACAATCATTTCTTACGGGATCTGTCAGAGAACACGAGTCCAGATTACCCAGAGTTCCAACCGCTTTCAAGGTCGGTGAAGCTGATCTCTGAGGTATCCCAGCGTATCCAGGACAACGCCCGCAGCCATGACAACCACCTGCAGCTGCGGCGGGTGCAGAGACTGCTGAAGGGGAGAAAGACCAAGGTGGAAGCTCCAGGACGCTGGTACCTGCGTGAGGGCTGGCTGCGTACCGTCCCCCCTAAAGGAGCAGAGGTCAAACCCAAGATGTTCTTCCTGTTTAGTGATGTCCTTCTCCAAGCCAAGCCCTGCCACCCTCTCCATCCCACCAACGGAGATAAGTTTGCTGGCCAGAGAGTCTACCCACTGAAGGACTGTACTGTGGACAAGGTGTTTGGGCACACCCAGAGCCAGGGCGGCCTTCTCAGTtTGACCTTCCCTAAAGCCAAGCTGCTGCTGATGTCCAGCGATCAGGAAGATATCAACGACTGGTATTACAGCCTGAGCTCTGCTGTAGGCCAGTTGAAGTCCAGGAACACAGTGGTCCATCAGAGAGATGATCTGGTCAGGAGACCTCTACGCTGCTTTGTAGAGGACCAGAAGAACCAAACTACCCCcaccacaccacccaccacctccaccccagggaggaagaggatggcCCCCCCTCCACCCCAGACCCCCTCCAGACCTACCGCTCCAGCAGAAGCAGAGGGAAGCGCCTCCAAGAGGATGAAGCTGACTGGGGGGCCAGCTGAGAGTGAATCGGCCAGGTCAAGCTGTGTGATCCTGTGAAGGACCAAGAACTTCAGAGATCCTTGCTCTTTCACACAAACCAATCAAGTCTGACAGATAAGCGTTAATGGGGGGGATATGAGGAGAGATTAGAGGTAGTTAGATACTGGAGAATCAGGTtaatggggagagatgggaggtagTTAGAtatgaggagagatgggaggtaGTTAGATACTGGAGAATTAGGTTAATTGGGAGAGATGGGAGGTAGTTAGAtatgaggagagatgggaggtagTTAGAtatgaggagagatgggaggtagTTAGAtatgaggagagatgggaggtagATACTGGAGAATCAGGTTAACGGTGGGATATGAGGAGAGATGCAAGGTAGTTAGATGATATGAAATGTGAAGATTTTAACACTGATGCCAAAGACACTTTGAAACACCTTCACGATAGAAGCTCCAGCAGATGGAAAATGTGAGATTTGACTCTGAAATAAATGAATGTTTTGTCCTGAA
>XR_005036249.1
TTGACGCCCTGCTACGTCACAAGGCTGGGCGGGTCCGTTTCCATAGCCCCTGGGGGACCGGGAGCCAATAGCGTCGCTTGACAACCCGGAAGAAACAGCAGCCCGAAAAGAGCGCCTGGATTTCAATTTTAGAACAGATACGAAGACATTGACAGTTCTGATCTGAGGTCAGTGTCCGCCCCAGTAGACCATGAGTTTCTCCCCCACCCCCGTGGGCCCGCCCGGCAGCCGTAGTGtccaggagcagagagagaagtgggagaggaagagaaccCGTACAGTCAGGGCCCTGGTCCAAACTGAACAGAAATACTGTAAACAACTACAACTAGTCAACACGTACTTTGTGGAGATTCTGAAGGCCAAAGGCACCCTGAGGCAGGACATTAGAGAAAGCATCTTCAGTTCCATTCCATCCGTCTATTCAGTAAACCAGACGTTGTTGGTCCGTCTGGAGAACGGGGACTTGGGCCGTGGATTTGATGACTTCTGTCCTCACCTCCACCACTACGTTACCTACGTAGACAACATCCAGAACGCCAGCAAGGTCCTGGCGCTCCAGGTAAAGAAGAACAAAGCCTTTAGAAGGTTTAAGAAGCTCCAGGAGTCCAGACCAGAGTTCCTCAACTGTAAACTAGAGGACCTCCTCCCACTGCCCATACAGCGCATCCAACAGTACAATCATTTCTTACGGGATCTGTCAGAGAACACGAGTCCAGATTACCCAGAGTTCCAACCGCTTTCAAGGTCGGTGAAGCTGATCTCTGAGGTATCCCAGCGTATCCAGGACAACGCCCGCAGCCATGACAACCACCTGCAGCTGCGGCGGGTGCAGAGACTGCTGAAGGGGAGAAAGACCAAGGTGGAAGCTCCAGGACGCTGGTACCTGCGTGAGGGCTGGCTGCGTACCGTCCCCCCTAAAGGAGCAGAGGTCAAACCCAAGATGTTCTTCCTGTTTAGTGATGTCCTTCTCCAAGCCAAGCCCTGCCACCCTCTCCATCCCACCAACGGAGATAAGTTTGCTGGCCAGAGAGTCTACCCACTGAAGGACTGTACTGTGGACAAGGTGTTTGGGCACACCCAGAGCCAGGGCGGCCTTCTCAGTtTGACCTTCCCTAAAGCCAAGCTGCTGCTGATGTCCAGCGATCAGGAAGATATCAACGACTGGTATTACAGCCTGAGCTCTGCTGTAGGCCAGTTGAAGTCCAGGAACACAGTGGTCCATCAGAGAGATGATCTGGTCAGGAGACCTCTACGCTGCTTTGTAGAGGACCAGAAGAACCAAACTACCCCcaccacaccacccaccacctccaccccagggaggaagaggatggcCCCCCCTCCACCCCAGACCCCCTCCAGACCTACCGCTCCAGCAGAAGCAGAGGGAAGCGCCTCCAAGAGGATGAAGCTGACTGGGGGGCCAGCTGAGAGTGAATCGGCCAGGTCAAGCTGTGTGATCCTGTGAAGGACCAAGAACTTCAGAGATCCTTGCTCTTTCACACAAACCAATCAAGTCTGACAGATAAGCGTTAATGGGGGGGATATGAGGAGAGATTAGAGGTAGTTAGATACTGGAGAATCAGGTtaatggggagagatgggaggtagTTAGAtatgaggagagatgggagTTAGATACTGGAGAATTAGGTTAATTGGGAGAGATGGGAGGTAGTTAGAtatgaggagagatgggaggtagTTAGAtatgaggagagatgggaggtagTTAGAtatgaggagagatgggaggtagATACTGGAGAATCAGGTTAACGGTGGGATATGAGGAGAGATGCAAGGTAGTTAGATGATATGAAATGTGAAGATTTTAACACTGATGCCAAAGACACTTTGAAACACCTTCACGATAGAAGCTCCAGCAGATGGAAAATGTGAGATTTGACTCTGAAATAAATGAATGTTTTGTCCTGAA
>TU1517133
CAGCAGCCCGAAAAGAGCGCCTGGATTTCAATTTTAGAACAGATACGAAGACATTGACAGTTCTGATCTGAGGTCAGTGTCCGCCCCAGTAGACCATGAGTTTCTCCCCCACCCCCGTGGGCCCGCCCGGCAGCCGTAGTGtccaggagcagagagagaagtgggagaggaagagaaccCGTACAGTCAGGGCCCTGGTCCAAACTGAACAGAAATACTGTAAACAACTACAACTAGTCAACACGTACTTTGTGGAGATTCTGAAGGCCAAAGGCACCCTGAGGCAGGACATTAGAGAAAGCATCTTCAGTTCCATTCCATCCGTCTATTCAGTAAACCAGACGTTGTTGGTCCGTCTGGAGAACGGGGACTTGGGCCGTGGATTTGATGACTTCTGTCCTCACCTCCACCACTACGTTACCTACGTAGACAACATCCAGAACGCCAGCAAGGTCCTGGCGCTCCAGGTAAAGAAGAACAAAGCCTTTAGAAGGTTTAAGAAGCTCCAGGAGTCCAGACCAGAGTTCCTCAACTGTAAACTAGAGGACCTCCTCCCACTGCCCATACAGCGCATCCAACAGTACAATCATTTCTTACGGGATCTGTCAGAGAACACGAGTCCAGATTACCCAGAGTTCCAACCGCTTTCAAGGTCGGTGAAGCTGATCTCTGAGGTATCCCAGCGTATCCAGGACAACGCCCGCAGCCATGACAACCACCTGCAGCTGCGGCGGGTGCAGAGACTGCTGAAGGGGAGAAAGACCAAGGTGGAAGCTCCAGG
>TU1517137
CAGCAGCCCGAAAAGAGCGCCTGGATTTCAATTTTAGAACAGATACGAAGACATTGACAGTTCTGATCTGAGGTCAGTGTCCGCCCCAGTAGACCATGAGTTTCTCCCCCACCCCCGTGGGCCCGCCCGGCAGCCGTAGTGtccaggagcagagagagaagtgggagaggaagagaaccCGTACAGTCAGGGCCCTGGTCCAAACTGAACAGAAATACTGTAAACAACTACAACTAGTCAACACGTACTTTGTGGAGATTCTGAAGGCCAAAGGCACCCTGAGGCAGGACATTAGAGAAAGCATCTTCAGTTCCATTCCATCCGTCTATTCAGTAAACCAGACGTTGTTGGTCCGTCTGGAGAACGGGGACTTGGGCCGTGGATTTGATGACTTCTGTCCTCACCTCCACCACTACGTTACCTACGTAGACAACATCCAGAACGCCAGCAAGGTCCTGGCGCTCCAGGTAAAG

Function

symbol description
arhgef39 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in positive regulation of cell migration. Predicted to be active in plasma membrane. Orthologous to human ARHGEF39 (Rho guanine nucleotide exchange factor 39).

NR:

description
rho guanine nucleotide exchange factor 39

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945433.1 False 1989 mRNA 0.52 11 77958971 78066964
XR_005036248.1 False 1946 mRNA 0.52 12 77958971 78066964
XR_005036249.1 False 1942 mRNA 0.52 12 77958971 78066964
TU1517133 False 781 TUCP 0.53 7 77959066 78017811
TU1517137 True 473 TUCP 0.52 5 77959066 77981673

Neighbor

gene id symbol gene type direction distance location
LOC118938903 NA coding upstream 146327 77810841 ~ 77812644 (+)
LOC118938862 NA coding upstream 540765 77416342 ~ 77505819 (+)
LOC118938861 grip1 coding upstream 1488154 75732149 ~ 76472933 (+)
LOC118938860 NA coding upstream 2586908 75366958 ~ 75372063 (+)
LOC110499731 dyrk2 coding upstream 2592782 75332550 ~ 75366189 (+)
rergla LOC106609822 coding downstream 28567 78095531 ~ 78107017 (+)
il17r il17r coding downstream 56118 78123082 ~ 78148831 (+)
LOC118938866 LOC108426397 coding downstream 158910 78225874 ~ 78277603 (+)
LOC118938868 LOC106591072 coding downstream 404633 78471597 ~ 78516510 (+)
LOC110507939 LOC106592658 coding downstream 447457 78514421 ~ 78516253 (+)
G1328147 NA non-coding upstream 35027 77923719 ~ 77923944 (+)
G1328139 NA non-coding upstream 56347 77902388 ~ 77902624 (+)
G1328138 NA non-coding upstream 59223 77899337 ~ 77899748 (+)
G1328131 NA non-coding upstream 74021 77884730 ~ 77884950 (+)
G1328127 NA non-coding upstream 77095 77881453 ~ 77881876 (+)
G1328205 NA non-coding downstream 16174 78083138 ~ 78083460 (+)
G1328206 NA non-coding downstream 19061 78086025 ~ 78086271 (+)
G1328210 NA non-coding downstream 28127 78095091 ~ 78095295 (+)
G1328211 mkrn1 non-coding downstream 59470 78126434 ~ 78162526 (+)
G1328225 NA non-coding downstream 84063 78151027 ~ 78152928 (+)
G1327379 NA other upstream 1145683 76809860 ~ 76813288 (+)
G1327230 NA other upstream 1369086 76587574 ~ 76589885 (+)
G1326605 NA other upstream 2073824 75884811 ~ 75885147 (+)
G1326586 NA other upstream 2152452 75805999 ~ 75806519 (+)
G1326503 cand1 other upstream 2360456 75593591 ~ 75598515 (+)
G1328201 NA other downstream 3065 78070029 ~ 78070403 (+)
LOC118936267 mrps33 other downstream 682414 78749330 ~ 78763988 (+)
LOC118938871 braf other downstream 713367 78780201 ~ 78826735 (+)
G1328968 NA other downstream 971640 79038604 ~ 79039457 (+)
G1329153 LOC106593057 other downstream 1551433 79618397 ~ 79621951 (+)
G1328193 NA non-coding downstream 27825 78045636 ~ 78047325 (+)
G1328196 NA non-coding downstream 31059 78048870 ~ 78052823 (+)

Expression


Co-expression Network