XLOC_031661 (sftpbb)


Basic Information

Item Value
gene id XLOC_031661
gene name sftpbb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 68845048 ~ 68876211 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061311
ATAATGTTGCAGCGTTTATCAACTGAACACAAACAGCACTGATTCCAGCATGCTGCAGTTCATCTTCCTCAACATCTTCCTCTTCACTTCTGCCCTGTCTTCAGGATGGGCAAGAAGTGTAGACCCAGAACCGAGAATCACCAGTCATACCATGATGAACGGCATGTGCAGCGATTGCAACAAGATTGTGCAGTTACTGACAGAAATGCTCTCCCATCCGGACTCACAGCATCTGATTGAAAAAGCGGTGGACAGGTTTTGTGATGAACACCCCGTCATCCCCTTGTGTATGGATGGAGCAAAGACATACGTTCATTTAATCATCAGACATTTCAGTGCATTTACAAAAGAAAATGGAGACGTTTGTTCAATGCTGGGACTGTGTGCCGTCCAGCCTGAGAGAAAATCAGCATCAGAGCTTGACTTCAGCCTAAACGAACAGGGTTTGATCTACACAAAACCCTCAAGAGGAACTGGTCCGGAGGTTCGTATCAATCCCATCTGTAATTTCTGCCTCCTCTTCATCAAGACAGTAGAGAGCTTGTTGccaaaagagaaaactgaaGCGGCTATAGAGGAACTGTTGGAGAAAATCTGTGGTTATTTGCCTGAACATTATGAGGACACGTGCAACACCTTTGTGAAAACCTATGCAAAGCAGTTAATTGAGCTCCTGCTGTACTCCATGCCTCCTCATGCCATCTGCACCGCACTGGGACTCTGTCTCTTACCAGAAACGCCAGCGATGGCCTTATCCGCCTCACAAACGGACTGTGACTCCTGTAAGATTCTAGCGGTTCTTTCCCAGTTTCATTTGGGTCTCAACGCAACAGACACGCAGACGTCTGACCTGCTAAACAAGATTTGCCACCTCCACCCTGACGCCATCCCTCAATGTGAAGGCTTTGTGAAGTTTCACGGCCACAGACTCCTGAAGACTGACGGGAAACATCCTCTGATTACTGCATGTCTGAAAGATGACCTTTGCAGAGGACAATTCTGAAAGAGATCCACTGAATGGGATTTCAGCGGCCAAGCGGTTTCTTTGTGACATTTGTTAACGCTGCCtaattacttattattttgtCTTGTACAAACcgatcaaatgttttttttataatagtttttgttTGTCTCTCTTCTAGTCACCAGGTCAGCAATTATTTAATCCAaagtacagcaaaaaaaaaaaaaaacacaaaactttgaaaagtttttaattaaaatagctgttttgaatatattttaaaaagtaatgtattCCTGTGATttaatttgtctagttttaacaTTACTCTAGTCATAATCCTGAAATAATTGCTGTCAAAAGgaaattatttgaatattttgaaaacacttttttttaaataattattattattattttgaaaacaacCGAGCAGAAAATTTTTTAGCCATGTTTGATGAAGAGAATTCAGTAGAACAGCATTTATCTTTGCATAATAATCTTTTGTTTACATATGAATATCTGTCATTAAGCAtgtataatgttacaaaatgtttTGATTTCAGATAAATGCTGATCTTTCTAAACAATAACATAATTCTCaacttaataaatattaatagtaaCAAATACCACTACTAATAAACATTTCTTTATCAGCTAgtcagcatattaaaatgatcTCTGAAAGATGGTTGTGAATGACTTATGAAGTGACAGGAGTAATGATGCTACAAATTCAGCAATGAAATCACATTTActaaatattcaaaaaatatataatattaaaactgTACTGTTTTCACTGTACTTTGGGTCATATAAATACAGACTTGGtgagcagaataaaaaaaa

Function

symbol description
sftpbb Predicted to enable methyltransferase activity. Predicted to act upstream of or within methylation and sphingolipid metabolic process. Predicted to be located in lysosome and nucleus. Human ortholog(s) of this gene implicated in lung disease (multiple); respiratory syncytial virus infectious disease; and toxic shock syndrome. Orthologous to human SFTPB (surfactant protein B).

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006665 sphingolipid metabolic process biological_process
GO:0032259 methylation biological_process
GO:0005764 lysosome cellular_component
GO:0005634 nucleus cellular_component
GO:0016740 transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060526-155 Predicted to enable methyltransferase activity. Predicted to act upstream of or within methylation and sphingolipid metabolic process. Predicted to be located in lysosome and nucleus. Human ortholog(s) of this gene implicated in lung disease (multiple); respiratory syncytial virus infectious disease; and toxic shock syndrome. Orthologous to human SFTPB (surfactant protein B).

Ensembl:

ensembl_id ENSDARG00000067566

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061311 True 1822 mRNA 0.38 10 68845048 68876211

Neighbor

gene id symbol gene type direction distance location
XLOC_031660 C5H2orf68 coding downstream 18871 68817034 ~ 68826177 (-)
XLOC_031659 NA coding downstream 28938 68813923 ~ 68816110 (-)
XLOC_031658 her1 coding downstream 49985 68788658 ~ 68795063 (-)
XLOC_031657 mepce coding downstream 62407 68765883 ~ 68782641 (-)
XLOC_031656 NA coding downstream 176506 68622098 ~ 68668542 (-)
XLOC_031662 NA coding upstream 14266 68890477 ~ 68893011 (-)
XLOC_031663 ank1a coding upstream 23262 68899473 ~ 69041102 (-)
XLOC_031664 dre-mir-2188 coding upstream 145648 69021859 ~ 69021962 (-)
XLOC_031665 GANAB coding upstream 264445 69140656 ~ 69180601 (-)
XLOC_031666 mat2ab coding upstream 322987 69199198 ~ 69212184 (-)
XLOC_031655 LO017735.1 non-coding downstream 226959 68617958 ~ 68618089 (-)
XLOC_031650 CABZ01083943.1 non-coding downstream 630714 68205952 ~ 68214334 (-)
XLOC_031644 NA non-coding downstream 872706 67964507 ~ 67972342 (-)
XLOC_031669 FQ311924.2 non-coding upstream 443767 69319978 ~ 69351280 (-)
XLOC_031681 CT978957.3 non-coding upstream 780183 69656394 ~ 69656508 (-)
XLOC_031682 NA non-coding upstream 801862 69678073 ~ 69696089 (-)

Expression


Co-expression Network