LOC118938866 (LOC108426397)


Basic Information

Item Value
gene id LOC118938866
gene name LOC108426397
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 78225874 ~ 78277603 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945437.1
ACacgaagagaagaagagaaggtaCCGCTATCATTACACAGAGGCTGAAAGAGAAAAAGCAAGGCGTTTTCTCAAGAGGGACAACTAGAATTGAATATAAACGCTGACTGAAATACAGTTGCAAGCTCAGAAATATTATCAATCCCTGCCCCAGTTTGGTCTGGATATCCCCTGGAGAGAAATCCCAGCAAAAATAGACAGGCCTGCGCTGCCCTCTGCCACGTGTCTCTCTCTGCTCGTTGTCTTGGATATCCTGCAGTCCAGAGGTGAAGGAAATGGATCCTATGGAGTGTCCGCTGTGTTTGGAGCCGCTGGAGACGGACGATGCCAACTTCTTCCCCTGCACCTGCGGCTACCAGATCTGTCGTTTCTGTTGGCACCGGATCCGCACAGACGAGAACGGCCTCTGCCCTGCCTGCAGAAAGCCTTACCCAGAGAACCCAGCGGTCTACAACCCCCTGTCAGCGGAGGAGCTGCAGAGGATAAAGAATGAGAAGAAGGCCAAACAGGTGGAGAAGAAACAGAAGACGACagaaaacaggaagcacctggcCAGCGTCAGGGTGGTGCAGAGAAACCTGGTGTTTCTAGTGGGGCTGTCACAGAGACTGGCCGACCCCGAGATTCTAAAGAGACCCGAGTATTTTGTGAAGTTTGGGAAGGTCCATAAAGTAGTCATCAACAACAGCACCTCATACGCCGGCTCACAGGGTCCCAGTGCCAGTGCCTATGTCACTTACATCCGCTCAGAAGACGCCCTCAGAGCAATACAGTGTGTCAACAACCTAGTAGTAGACGGCAGAACACTGAAGGCTTCTTTAGGGACGACGAAATACTGCAGCTACTTTCTGAAGAGCATGGGGTGTCCCAAACCCGACTGCATGTATCTACACGAACTGGGGGACGATGCGGCCAGCTTCACTAAAGAGGAGATGCAGGCAGGGAAGCATCAAGAGTATGAACAGAGGCTGTTACAGGATCTGTACCAGAACCCCAGCTTTACCACCCAGACCTCAGGAGGGGAGACGACCAAGAGCTCTAAACCCAGCTGTTTGcagagatccAACAGTAACAACAGTCATGGACAAGAGGCGTGGCCAGCGTTACAACCCACGGGGAAGACGACCAATGGTCTATCGGAGCACAGTAAGAGTCCGCCGTCGAACGGCGGCGGCTTGGACTCTGAACACGTGACACCGGACGGACCAGAACGTGACGTTGGCCTGGGCTCTGTGACCGGCCTCTCGCCTTTCTCCTCAAGCCGTGACCCCCCAAGCCCCAGGGACGCTCTGCCAGACGTCACCAGGAGCAGGGACACACAACATGGGGACTCCTCAGAACGTCACAACCTGctcCCAGACAGTGACTCTCCGTcgccccctcctgtcctctccggCCCTCCTGGTTTCTCCAAAGCCAGCCAGGTGGTTCCCATCAGTGTGACTACCCGGTCTCCCTTTCAGGGGGCTGACGCCGAGTCCCAGTCTCTGTTCTCAGACAACAGTAACTATCGCCATCCTAACCCCGTCCCCAGTAGCCTCCGTGGGTTCACCAGCAGCTCCACACATAACGACACCTGGCCCACTGCACCCCAACCACACAGCCTCTTCACTTCAGATTCCATCCCAGTATCGTCCTCAACAGACTGGCAGGCAGCCTTCGGCTTCGGCTCATCCAAACAGCAGACGTCAGAAGATGACTTGGGATTCGATCCTTTCGACATCACCCGTAAAGCCCTGGAGGACCTGATAGAGAAGGAGCTCAGCGTTCAGGACAGCCTCccgtccctctccatctccccaggTCCcttccccccccaccaccaccactcactcctctcctccgtaGCCACCAAAGCTGCTCCTGGTCCCCCTGGAGAGCTGATACCCCGTAACCACTTCTTCTCTGGGCCCATCTCCGGTCTCTCTAGTAATCACTGCTTCTCCCAGATGCATCAACACCACCCTCAACAACGGGCTGTCTATAACTCCTTCAGCTTCCCCGGACAGCcgccttcatcatcatcatcatcgtcctcGTCTTCATCACAGACCAGCCGCCACCCCTGGATGACTTCTGCCCCGAACCGAAATAACTTCATGACGCACTTCGGCGGCAATCGTACGGTGTCACAACACAGCAGCTTCCTGGACCTGATGCTGCCCAGTGCAGGGCTGGGAGGCATCGCCACGACAGgtttccCATCGTCAGCAGGCAACAGTTTTGACTCCCAGGATGACAACCCTCCCCACTGGCTCAAGTCCCTTCAGGCCCTTACAGAGATGGATGCTCCGTCTATCCCCAGCTCCACTGTGAACCCGAACCCCCAGCAGCCCAACTCACACAGCGGCCAGGTCCGTCCTCACCACAGACCCAGCTGGGCCCCCTTCCCACCCCCATCCACAGCCTCTCACAACCCCCACCCAGTCGGCCACTTCCACTCCCCACCTCCAGGCTTCCAGACTGCTTTCAGATCCCCGGCTCAGACGCCCACAGAGCTGCTACAGAGCGCCGGCATGGACCGCCACTAGGGGGCGATGCTGTGAAGTGGACTTCTGATTCCCGTCTTTAAATCCCCCACAGAAACATAAATTAAACTAAATCGGATGtaattaacaaacaaaaaaaacattaagaGATGTTGTTCTTCCTGGTGAGCTGGTTTTATGATCCTGTGTTCCATCTTGGTTGGGTTGTTTCAGTTGGTCTATAGAGGCAAACTACTATCCTGCTACACTGTCTACTGgccctgcctctgtctgtctacctggccctgcctctgtctgtctacctggcccttcctctgtctgtctacctggcccttcctctgtctgtctgtacctggcCCTGCCTCTGTCTGTACCTGgccctgcctctgtctgtctacctggccctgcctctgtctgtctacctggctctgtctgtctcagtctgtctacCTGCCCCAGTCTGTCTACCTGCACCAGTCTGTCTACCTGCCCCAGTCTGTCTACCTGCCTCAGTCTGTCTACCtgcctcagtctgtctgtctacctgcctcagtctgtctgtctacctgcctcagtctgtctgtct

Function

NR:

description
PREDICTED: CCR4-NOT transcription complex subunit 4 isoform X2

GO:

id name namespace
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG:

id description
K10643 CNOT4, NOT4, MOT2; CCR4-NOT transcription complex subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945437.1 True 3075 mRNA 0.56 12 78225874 78277603

Neighbor

gene id symbol gene type direction distance location
il17r il17r coding upstream 77043 78123082 ~ 78148831 (+)
rergla LOC106609822 coding upstream 118857 78095531 ~ 78107017 (+)
LOC110490691 arhgef39 coding upstream 158910 77958971 ~ 78066964 (+)
LOC118938903 NA coding upstream 413230 77810841 ~ 77812644 (+)
LOC118938862 NA coding upstream 807668 77416342 ~ 77505819 (+)
LOC118938868 LOC106591072 coding downstream 193994 78471597 ~ 78516510 (+)
LOC110507939 LOC106592658 coding downstream 236818 78514421 ~ 78516253 (+)
LOC110507940 LOC106592244 coding downstream 248385 78525988 ~ 78546160 (+)
trnaa-ugc-124 NA coding downstream 254867 78532470 ~ 78532540 (+)
LOC110510817 LOC106592244 coding downstream 371971 78649574 ~ 78658219 (+)
G1328246 NA non-coding upstream 16779 78207868 ~ 78209095 (+)
G1328231 LOC106609808 non-coding upstream 50367 78164312 ~ 78175507 (+)
G1328235 NA non-coding upstream 51141 78174081 ~ 78174733 (+)
G1328233 NA non-coding upstream 54729 78166291 ~ 78171145 (+)
G1328211 mkrn1 non-coding upstream 63348 78126434 ~ 78162526 (+)
G1328266 NA non-coding downstream 11548 78289151 ~ 78290887 (+)
G1328280 NA non-coding downstream 54610 78332213 ~ 78335392 (+)
G1328284 NA non-coding downstream 68894 78346497 ~ 78347288 (+)
G1328285 NA non-coding downstream 74472 78352075 ~ 78353262 (+)
G1328314 NA non-coding downstream 151753 78429356 ~ 78432177 (+)
G1328201 NA other upstream 155471 78070029 ~ 78070403 (+)
G1327379 NA other upstream 1412586 76809860 ~ 76813288 (+)
G1327230 NA other upstream 1635989 76587574 ~ 76589885 (+)
G1326605 NA other upstream 2340727 75884811 ~ 75885147 (+)
LOC118936267 mrps33 other downstream 471775 78749330 ~ 78763988 (+)
LOC118938871 braf other downstream 502728 78780201 ~ 78826735 (+)
G1328968 NA other downstream 761001 79038604 ~ 79039457 (+)
G1329153 LOC106593057 other downstream 1340794 79618397 ~ 79621951 (+)
G1329159 NA other downstream 1386311 79663914 ~ 79664732 (+)

Expression


Co-expression Network