LOC118938868 (LOC106591072)


Basic Information

Item Value
gene id LOC118938868
gene name LOC106591072
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 78471597 ~ 78516510 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945442.1
GGCTTGCTGAAGAGATCCACTAGTTTCATTGGAGAGATCTTCATTTGATTGGAAATTGCTTCTGGTGTAGGATTGACTAAACATTTGCTGACACTATTGGAGGAATAATGCATTTCAGTTCAAATGCAAAGCAGTTTGTTCTCCTTCTCATTGTTGGAATTGTTTTGCTTCTGGGGTATGTTCACTACAGCTTCTTCAATGAAAGGCTCAATGGGGTTTGGTTTGACTCTTCCAACAGAGATATCCCGGTTGATAAGGACCAGAGGAACACCAGGCTATTGTACAAGCAGCCCAGTGTCTTGGCGGGTCGTACTGATGTGGTGGCAGTCACCCCGTGGTTGGCACCCATCGTCTGGGATGGAACCTTTGACCCTGACCTCGTCGACACAATCTACAAGTCCATGAACATCACCATAGCAACCACCGTGTTTGCCGTTGGAAAATACGTCCTCTTTCTCCGAGATTTCCTGGAGACAGCAGAGAAACACTTCCTGGTCGACTTCAACGTGCGCTACTACGTTTTCACAGATCGTCCCGACGATGTTCCATCAGTGAACCTGTCTCAGGGGAGACATTTAAGTGTGATCCAGGTGCCAGGTTCAAACCGCTGGCAGGAGATATCAGCCCGGAGGATGGAGATCATCCAGACAGCCATCGAACGTCAGATCAGCAGGGAGGCCGACTACATCTTCTGTCTGGACGTGGACAGCAAGTTCCACGCTCGCTGGGGAGCCGAGTCTCTGGGCAGGCTGGTTGCTGTGATTCACCCATGGTTCTACCAGGCGACCCGTGACCACTTCACATATGAACGGCGTCCAGCCTCGACAGCCTACATCCCCATGGATGAGGGAGATTACTACTATGCCGGGGCCGTGTTCGGGGGGTTGTTGGAGGAAGTGTACACACTAACAAAGGTATGTCGGAACCAGCTTGAAGAGGACGCAAGGAATTCCATCGAGGCTGCCTGGCAGGAGGAGAGTCACCTCAACAGGTACCTGCTTTACAACAAGCCCAGCAAGCTGTTGTCTCCAGAGTACCAGTGGGATGACAAGAAGACCAAAACCAAAGAGGTCAAAGTAATTCGCTTCTCTTCTGTCGTTAAAAACTATGCTGAAATTCGTCCCAATGTATAGGACTAGGAATTGGATATTCGACCGACAGAAGAAAAACTTAATTGATTATGGTTAATGTTAGGTTAAGTTCAGGTATAGCTTCACtgaggtttgggttaaggttaggttaagttcAGGTATAGCTTCACTGAGGTTTGGGTTAATGTTAGGTTAAGTTCAGGTATAGCTTCACtgaggtttgggttaaggttactGTAGGTTAAGTTCAGGTATAGCTTCACTAAGGTTTGGGTTAATGTTAGGTTAAGTTCAGGGAAAGGTATAAAATGTCACATTGGATATTCCGGCCCCATTCATTTTGTGTTGGTGAAATATAGACACTGACATAAAAGTACTAttttaaatgtactgtatatcagtCACTGTTGTAGTTTGGGGATAATAACGTTCTTCATT
>XM_036945443.1
GGCTTGCTGAAGAGATCCACTAGTTTCATTGGAGAGATCTTCATTTGATTGGAAATTGCTTCTGGTGTAGGATTGACTAAACATTTGCTGACACTATTGGAGGAATAATGCATTTCAGTTCAAATGCAAAGCAGTTTGTTCTCCTTCTCATTGTTGGAATTGTTTTGCTTCTGGGGTATGTTCACTACAGCTTCTTCAATGAAAGGCTCAATGGAGATATCCCGGTTGATAAGGACCAGAGGAACACCAGGCTATTGTACAAGCAGCCCAGTGTCTTGGCGGGTCGTACTGATGTGGTGGCAGTCACCCCGTGGTTGGCACCCATCGTCTGGGATGGAACCTTTGACCCTGACCTCGTCGACACAATCTACAAGTCCATGAACATCACCATAGCAACCACCGTGTTTGCCGTTGGAAAATACGTCCTCTTTCTCCGAGATTTCCTGGAGACAGCAGAGAAACACTTCCTGGTCGACTTCAACGTGCGCTACTACGTTTTCACAGATCGTCCCGACGATGTTCCATCAGTGAACCTGTCTCAGGGGAGACATTTAAGTGTGATCCAGGTGCCAGGTTCAAACCGCTGGCAGGAGATATCAGCCCGGAGGATGGAGATCATCCAGACAGCCATCGAACGTCAGATCAGCAGGGAGGCCGACTACATCTTCTGTCTGGACGTGGACAGCAAGTTCCACGCTCGCTGGGGAGCCGAGTCTCTGGGCAGGCTGGTTGCTGTGATTCACCCATGGTTCTACCAGGCGACCCGTGACCACTTCACATATGAACGGCGTCCAGCCTCGACAGCCTACATCCCCATGGATGAGGGAGATTACTACTATGCCGGGGCCGTGTTCGGGGGGTTGTTGGAGGAAGTGTACACACTAACAAAGGTATGTCGGAACCAGCTTGAAGAGGACGCAAGGAATTCCATCGAGGCTGCCTGGCAGGAGGAGAGTCACCTCAACAGGTACCTGCTTTACAACAAGCCCAGCAAGCTGTTGTCTCCAGAGTACCAGTGGGATGACAAGAAGACCAAAACCAAAGAGGTCAAAGTAATTCGCTTCTCTTCTGTCGTTAAAAACTATGCTGAAATTCGTCCCAATGTATAGGACTAGGAATTGGATATTCGACCGACAGAAGAAAAACTTAATTGATTATGGTTAATGTTAGGTTAAGTTCAGGTATAGCTTCACtgaggtttgggttaaggttaggttaagttcAGGTATAGCTTCACTGAGGTTTGGGTTAATGTTAGGTTAAGTTCAGGTATAGCTTCACtgaggtttgggttaaggttactGTAGGTTAAGTTCAGGTATAGCTTCACTAAGGTTTGGGTTAATGTTAGGTTAAGTTCAGGGAAAGGTATAAAATGTCACATTGGATATTCCGGCCCCATTCATTTTGTGTTGGTGAAATATAGACACTGACATAAAAGTACTAttttaaatgtactgtatatcagtCACTGTTGTAGTTTGGGGATAATAACGTTCTTCATT
>XM_036945439.1
GCTTGCTGAAGAGATCCACTAGTTTCATTGGAGAGATCTTCATTTGATTGGAAATTGCTTCTGGTGTAGGATTGACTAAACATTTGCTGACACTATTGGAGGAATAATGCATTTCAGTTCAAATGCAAAGCAGTTTGTTCTCCTTCTCATTGTTGGAATTGTTTTGCTTCTGGGGTATGTTCACTACAGCTTCTTCAATGAAAGGCTCAATGGGGTTTGGTTTGACTCTTCCAACAGAGATATCCCGGTTGATAAGGACCAGAGGAACACCAGTCTGAGTAAGTCCATATTCAGGAGCAGAGAACAGAACATCATCTCTCCAGAAAGGCTATTGTACAAGCAGCCCAGTGTCTTGGCGGGTCGTACTGATGTGGTGGCAGTCACCCCGTGGTTGGCACCCATCGTCTGGGATGGAACCTTTGACCCTGACCTCGTCGACACAATCTACAAGTCCATGAACATCACCATAGCAACCACCGTGTTTGCCGTTGGAAAATACGTCCTCTTTCTCCGAGATTTCCTGGAGACAGCAGAGAAACACTTCCTGGTCGACTTCAACGTGCGCTACTACGTTTTCACAGATCGTCCCGACGATGTTCCATCAGTGAACCTGTCTCAGGGGAGACATTTAAGTGTGATCCAGGTGCCAGGTTCAAACCGCTGGCAGGAGATATCAGCCCGGAGGATGGAGATCATCCAGACAGCCATCGAACGTCAGATCAGCAGGGAGGCCGACTACATCTTCTGTCTGGACGTGGACAGCAAGTTCCACGCTCGCTGGGGAGCCGAGTCTCTGGGCAGGCTGGTTGCTGTGATTCACCCATGGTTCTACCAGGCGACCCGTGACCACTTCACATATGAACGGCGTCCAGCCTCGACAGCCTACATCCCCATGGATGAGGGAGATTACTACTATGCCGGGGCCGTGTTCGGGGGGTTGTTGGAGGAAGTGTACACACTAACAAAGGTATGTCGGAACCAGCTTGAAGAGGACGCAAGGAATTCCATCGAGGCTGCCTGGCAGGAGGAGAGTCACCTCAACAGGTACCTGCTTTACAACAAGCCCAGCAAGCTGTTGTCTCCAGAGTACCAGTGGGATGACAAGAAGACCAAAACCAAAGAGGTCAAAGTAATTCGCTTCTCTTCTGTCGTTAAAAACTATGCTGAAATTCGTCCCAATGTATAGGACTAGGAATTGGATATTCGACCGACAGAAGAAAAACTTAATTGATTATGGTTAATGTTAGGTTAAGTTCAGGTATAGCTTCACtgaggtttgggttaaggttaggttaagttcAGGTATAGCTTCACTGAGGTTTGGGTTAATGTTAGGTTAAGTTCAGGTATAGCTTCACtgaggtttgggttaaggttactGTAGGTTAAGTTCAGGTATAGCTTCACTAAGGTTTGGGTTAATGTTAGGTTAAGTTCAGGGAAAGGTATAAAATGTCACATTGGATATTCCGGCCCCATTCATTTTGTGTTGGTGAAATATAGACACTGACATAAAAGTACTAttttaaatgtactgtatatcagtCACTGTTGTAGTTTGGGGATAATAACGTTCTTCATT
>XM_036945440.1
GCTTGCTGAAGAGATCCACTAGTTTCATTGGAGAGATCTTCATTTGATTGGAAATTGCTTCTGGTGTAGGATTGACTAAACATTTGCTGACACTATTGGAGGAATAATGCATTTCAGTTCAAATGCAAAGCAGTTTGTTCTCCTTCTCATTGTTGGAATTGTTTTGCTTCTGGGGTATGTTCACTACAGCTTCTTCAATGAAAGGCTCAATGGGGTTTGGTTTGACTCTTCCAACAGAGATATCCCGGTTGATAAGGACCAGAGGAACACCAGTCTGAGTAAGTCCATATTCAGGAGCAGAGAACAGAACATCATCTCTCCAGAAAGGCTATTGTACAAGCAGCCCAGTGTCTTGGCGGGTCGTACTGATGTGGTGGCAGTCACCCCGTGGTTGGCACCCATCGTCTGGGATGGAACCTTTGACCCTGACCTCGTCGACACAATCTACAAGTCCATGAACATCACCATAGCAACCACCGTGTTTGCCGTTGGAAAATACGTCCTCTTTCTCCGAGATTTCCTGGAGACAGCAGAGAAACACTTCCTGGTCGACTTCAACGTGCGCTACTACGTTTTCACAGATCGTCCCGACGATGTTCCATCAGTGAACCTGTCTCAGGGGAGACATTTAAGTGTGATCCAGGTGCCAGGTTCAAACCGCTGGCAGGAGATATCAGCCCGGAGGATGGAGATCATCCAGACAGCCATCGAACGTCAGATCAGCAGGGAGGCCGACTACATCTTCTGTCTGGACGTGGACAGCAAGTTCCACGCTCGCTGGGGAGCCGAGTCTCTGGGCAGGCTGGTTGCTGTGATTCACCCATGGTTCTACCAGGCGACCCGTGACCACTTCACATATGAACGGCGTCCAGCCTCGACAGCCTACATCCCCATGGATGAGGGAGATTACTACTATGCCGGGGCCGTGTTCGGGGGGTTGTTGGAGGAAGTGTACACACTAACAAAGGTATGTCGGAACCAGCTTGAAGAGGACGCAAGGAATTCCATCGAGGCTGCCTGGCAGGAGGAGAGTCACCTCAACAGGTACCTGCTTTACAACAAGCCCAGCAAGCTGTTGTCTCCAGAGTACCAGTGGGATGACAAGAAGACCAAAACCAAAGAGGTCAAAGTAATTCGCTTCTCTTCTGTCGTTAAAAACTATGCTGAAATTCGTCCCAATGTATAGGACTAGGAATTGGATATTCGACCGACAGAAGAAAAACTTAATTGATTATGGTTAATGTTAGGTTAAGTTCAGGTATAGCTTCACtgaggtttgggttaaggttaggttaagttcAGGTATAGCTTCACTGAGgtttgggttaaggttaggttaagttcAGGTATAGCTTCACtgaggtttgggttaaggttactGTAGGTTAAGTTCAGGTATAGCTTCACTAAGGTTTGGGTTAATGTTAGGTTAAGTTCAGGGAAAGGTATAAAATGTCACATTGGATATTCCGGCCCCATTCATTTTGTGTTGGTGAAATATAGACACTGACATAAAAGTACTAttttaaatgtactgtatatcagtCACTGTTGTAGTTTGGGGATAATAACGTTCTTCATT
>XM_036945441.1
GCTTGCTGAAGAGATCCACTAGTTTCATTGGAGAGATCTTCATTTGATTGGAAATTGCTTCTGGTGTAGGATTGACTAAACATTTGCTGACACTATTGGAGGAATAATGCATTTCAGTTCAAATGCAAAGCAGTTTGTTCTCCTTCTCATTGTTGGAATTGTTTTGCTTCTGGGGTATGTTCACTACAGCTTCTTCAATGAAAGGCTCAATGGAGATATCCCGGTTGATAAGGACCAGAGGAACACCAGTCTGAGTAAGTCCATATTCAGGAGCAGAGAACAGAACATCATCTCTCCAGAAAGGCTATTGTACAAGCAGCCCAGTGTCTTGGCGGGTCGTACTGATGTGGTGGCAGTCACCCCGTGGTTGGCACCCATCGTCTGGGATGGAACCTTTGACCCTGACCTCGTCGACACAATCTACAAGTCCATGAACATCACCATAGCAACCACCGTGTTTGCCGTTGGAAAATACGTCCTCTTTCTCCGAGATTTCCTGGAGACAGCAGAGAAACACTTCCTGGTCGACTTCAACGTGCGCTACTACGTTTTCACAGATCGTCCCGACGATGTTCCATCAGTGAACCTGTCTCAGGGGAGACATTTAAGTGTGATCCAGGTGCCAGGTTCAAACCGCTGGCAGGAGATATCAGCCCGGAGGATGGAGATCATCCAGACAGCCATCGAACGTCAGATCAGCAGGGAGGCCGACTACATCTTCTGTCTGGACGTGGACAGCAAGTTCCACGCTCGCTGGGGAGCCGAGTCTCTGGGCAGGCTGGTTGCTGTGATTCACCCATGGTTCTACCAGGCGACCCGTGACCACTTCACATATGAACGGCGTCCAGCCTCGACAGCCTACATCCCCATGGATGAGGGAGATTACTACTATGCCGGGGCCGTGTTCGGGGGGTTGTTGGAGGAAGTGTACACACTAACAAAGGTATGTCGGAACCAGCTTGAAGAGGACGCAAGGAATTCCATCGAGGCTGCCTGGCAGGAGGAGAGTCACCTCAACAGGTACCTGCTTTACAACAAGCCCAGCAAGCTGTTGTCTCCAGAGTACCAGTGGGATGACAAGAAGACCAAAACCAAAGAGGTCAAAGTAATTCGCTTCTCTTCTGTCGTTAAAAACTATGCTGAAATTCGTCCCAATGTATAGGACTAGGAATTGGATATTCGACCGACAGAAGAAAAACTTAATTGATTATGGTTAATGTTAGGTTAAGTTCAGGTATAGCTTCACtgaggtttgggttaaggttaggttaagttcAGGTATAGCTTCACTGAGGTTTGGGTTAATGTTAGGTTAAGTTCAGGTATAGCTTCACtgaggtttgggttaaggttactGTAGGTTAAGTTCAGGTATAGCTTCACTAAGGTTTGGGTTAATGTTAGGTTAAGTTCAGGGAAAGGTATAAAATGTCACATTGGATATTCCGGCCCCATTCATTTTGTGTTGGTGAAATATAGACACTGACATAAAAGTACTAttttaaatgtactgtatatcagtCACTGTTGTAGTTTGGGGATAATAACGTTCTTCATT

Function

NR:

description
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG:

id description
K00709 ABO; histo-blood group ABO system transferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945442.1 False 1529 mRNA 0.46 8 78471597 78516510
XM_036945443.1 False 1505 mRNA 0.46 8 78471597 78516510
XM_036945439.1 False 1582 mRNA 0.46 9 78471598 78516510
XM_036945440.1 False 1582 mRNA 0.46 9 78471598 78516510
XM_036945441.1 True 1558 mRNA 0.46 9 78471598 78516510
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118938866 LOC108426397 coding upstream 193994 78225874 ~ 78277603 (+)
il17r il17r coding upstream 322766 78123082 ~ 78148831 (+)
rergla LOC106609822 coding upstream 364580 78095531 ~ 78107017 (+)
LOC110490691 arhgef39 coding upstream 404633 77958971 ~ 78066964 (+)
LOC118938903 NA coding upstream 658953 77810841 ~ 77812644 (+)
LOC110507940 LOC106592244 coding downstream 9478 78525988 ~ 78546160 (+)
trnaa-ugc-124 NA coding downstream 15960 78532470 ~ 78532540 (+)
LOC110510817 LOC106592244 coding downstream 133064 78649574 ~ 78658219 (+)
LOC118936267 mrps33 coding downstream 232820 78749330 ~ 78763988 (+)
LOC118938871 braf coding downstream 263691 78780201 ~ 78826735 (+)
G1328523 NA non-coding upstream 1404 78469972 ~ 78470193 (+)
G1328520 NA non-coding upstream 3150 78468200 ~ 78468447 (+)
G1328519 NA non-coding upstream 4385 78467010 ~ 78467212 (+)
G1328518 NA non-coding upstream 4693 78466661 ~ 78466904 (+)
G1328516 NA non-coding upstream 5059 78466289 ~ 78466538 (+)
G1328546 NA non-coding downstream 8142 78524652 ~ 78524897 (+)
G1328561 NA non-coding downstream 49400 78565910 ~ 78586743 (+)
G1328548 NA non-coding downstream 54894 78571404 ~ 78573510 (+)
G1328583 NA non-coding downstream 97679 78614189 ~ 78615027 (+)
G1328596 NA non-coding downstream 115032 78631542 ~ 78632729 (+)
G1328201 NA other upstream 401194 78070029 ~ 78070403 (+)
G1327379 NA other upstream 1658309 76809860 ~ 76813288 (+)
G1327230 NA other upstream 1881712 76587574 ~ 76589885 (+)
G1326605 NA other upstream 2586450 75884811 ~ 75885147 (+)
G1328968 NA other downstream 522094 79038604 ~ 79039457 (+)
G1329153 LOC106593057 other downstream 1101887 79618397 ~ 79621951 (+)
G1329159 NA other downstream 1147404 79663914 ~ 79664732 (+)

Expression

LOC118938868(LOC106591072) Expression in all Baseline Samples

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LOC118938868(LOC106591072) Expression in each Bioproject

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LOC118938868(LOC106591072) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 100.
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Co-expression Network