Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110507939 |
| gene name | LOC106592658 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048579.1 |
| NCBI id | CM023233.2 |
| chromosome length | 81569517 |
| location | 78514421 ~ 78516253 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like |
| id | name | namespace |
|---|---|---|
| GO:0005975 | carbohydrate metabolic process | biological_process |
| GO:0016020 | membrane | cellular_component |
| GO:0016758 | transferase activity, transferring hexosyl groups | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036945564.1 | True | 1135 | mRNA | 0.54 | 3 | 78514421 | 78516253 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118938866 | LOC108426397 | coding | upstream | 236818 | 78225874 ~ 78277603 (+) |
| il17r | il17r | coding | upstream | 365590 | 78123082 ~ 78148831 (+) |
| rergla | LOC106609822 | coding | upstream | 407404 | 78095531 ~ 78107017 (+) |
| LOC110490691 | arhgef39 | coding | upstream | 447457 | 77958971 ~ 78066964 (+) |
| LOC118938903 | NA | coding | upstream | 701777 | 77810841 ~ 77812644 (+) |
| LOC110507940 | LOC106592244 | coding | downstream | 9735 | 78525988 ~ 78546160 (+) |
| trnaa-ugc-124 | NA | coding | downstream | 16217 | 78532470 ~ 78532540 (+) |
| LOC110510817 | LOC106592244 | coding | downstream | 133321 | 78649574 ~ 78658219 (+) |
| LOC118936267 | mrps33 | coding | downstream | 233077 | 78749330 ~ 78763988 (+) |
| LOC118938871 | braf | coding | downstream | 263948 | 78780201 ~ 78826735 (+) |
| G1328535 | NA | non-coding | upstream | 15213 | 78491510 ~ 78499208 (+) |
| G1328523 | NA | non-coding | upstream | 44228 | 78469972 ~ 78470193 (+) |
| G1328520 | NA | non-coding | upstream | 45974 | 78468200 ~ 78468447 (+) |
| G1328519 | NA | non-coding | upstream | 47209 | 78467010 ~ 78467212 (+) |
| G1328518 | NA | non-coding | upstream | 47517 | 78466661 ~ 78466904 (+) |
| G1328546 | NA | non-coding | downstream | 8399 | 78524652 ~ 78524897 (+) |
| G1328561 | NA | non-coding | downstream | 49657 | 78565910 ~ 78586743 (+) |
| G1328548 | NA | non-coding | downstream | 55151 | 78571404 ~ 78573510 (+) |
| G1328583 | NA | non-coding | downstream | 97936 | 78614189 ~ 78615027 (+) |
| G1328596 | NA | non-coding | downstream | 115289 | 78631542 ~ 78632729 (+) |
| G1328201 | NA | other | upstream | 444018 | 78070029 ~ 78070403 (+) |
| G1327379 | NA | other | upstream | 1701133 | 76809860 ~ 76813288 (+) |
| G1327230 | NA | other | upstream | 1924536 | 76587574 ~ 76589885 (+) |
| G1326605 | NA | other | upstream | 2629274 | 75884811 ~ 75885147 (+) |
| G1328968 | NA | other | downstream | 522351 | 79038604 ~ 79039457 (+) |
| G1329153 | LOC106593057 | other | downstream | 1102144 | 79618397 ~ 79621951 (+) |
| G1329159 | NA | other | downstream | 1147661 | 79663914 ~ 79664732 (+) |
