LOC118938870 (LOC106592244)


Basic Information

Item Value
gene id LOC118938870
gene name LOC106592244
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 78599589 ~ 78623477 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945451.1
CTCTGATTCTGAGCTTCACTACCAAGAccaagctactactactactgtcactgtGTTTCTAGCCAGCTCAGGTACTCTCAACATTCTCTGATTCTGAGCTTCACTACCAAGAccaagctactactactactgtcactgtGTTTCTAGCCAGCTCAGGTACTCTCAACATTCTCTGATTCATGTACAGGTCGGTTGGCAGAATGTCTCTGCTGCTTTGTTGTATAGTGATGGCTCTGCACCTCGCAACAGGGCTGGATGCTGCCCCGGGGGTGGCGAACActacagaggaggaggtggaaggggtGGACTCCCAGTCACCATGCCCAGCCGGGTGGCATCAGAATGAGCATCGCTGCTTCTCCTTCTACCCCGTCTGGGCCACCTGGGCcactgcagagTTGTACTGCTCCCAGCACAGAGGGAACCTGGTGTCTGTTCACAGCCCGGGTCAACAGGTGTTTGTCCAGGATCTGGTAAGGAGACACACAGACCAGCCGGTCTGGATGGGAGGCTACGATGCAGCTCAGGAGGGGATGTGGCTGTGGAGTGACGGCTCAGCTGTTGACAGTTTCTACTGGGAGGAGGATGAGCCCAGTAACTCTGGACAGGGGGAGAACTGTATGGAGCTACACACTGgagGTGGGCAGGGCTGGAATGACGTGTCCTGTGCAGAGCTGAGGTTCTATGTGTGTTCTATGgagacaagATCTGGTTTAGCATCATTGCCAAGTCAGAAGAAAAAACACGAGAGAGaGTTGGTTGAAGAGGTGAGTATTTATGACGTCCTGTGGGAGACCAGTGAGAGAGTAGCAGATGAGATCCTCTACTCAGCCTTCCTCAGAGGGATGTATTCCAGACGTCTGCCTGCCCGCTGCTATGCTGACTTCTGCCACCAGGAGGTGCTGATCAGAACAGTCCAGGGTCCTCCAGACATCATGCTGTTTCTCCAGAGAACACATCAACGCTACCAGGAGTCTCTGAAGGAGGCCCAGAACCAAACTCCACCACACCTGAACCTGTCCTCAATCCAGCCCTCTGCAGCTGTGCGTCAGTACCTCCAGAGCTTCCATGACATTGTGAATGAGGAGCCCATCTACTGGCTGGTGTCTCTGCTGCCCAGAGCCCTGCTCAGACCTTACCTGGCACAGAACCTGCCcctgggagagaggagcagaccagGCCCCAGCCCCTGCGTCTACCCCTGGCTAAgcctcttcccctgcccctgctACCAGTGGGGGGGTGAGGACATGAAGCCAGACCAGAGGAACCAGAAGGACAAGTCAGGGACATATTACAGgcatcTACTGGAGAAGTACCAGGATGTGATAGACGTCTACAAGGCTGTCAACATCTTCAGAGTCCAGATGATCAACGAGAAGGCTCTCTTCACCTCCAGCTGGTTTCCCACTGgtgacgaggaggaagaggaggaccaacCCAACCTGTTGTCTGTGGAGTCTGGTCCTGACGTTAGGGTGAAGCTGTAGCAGTGCAGCTGTAGAATACAGGGGGCTGTGTGTGtaaggctgtgtgtgttggcttTCACACTGGGCAGGACTGTTCATCTTGTCAGACATATTCCAATATTCCACTTTTATGTTGGTAACTTCCCCCAAATAACTACTGTTCAGACTGTATTAATGCAATAACATAATGAATGTACACATCTAATAACACATTTAATTATTGTCAACAAAGGAGctacaataaaataaataacatttaggTAATAAAATCATAGAATGAAACTGTG
>XM_036945448.1
TCTGATTCTGAGCTTCACTACCAAGAccaagctactactactactgtcactgtGTTTCTAGCCAGCTCAGGTACTCTCAACATTCTCTGATTCTGAGCTTCACTACCAAGAccaagctactactactactgtcactgtGTTTCTAGCCAGCTCAGGTCGGTTGGCAGAATGTCTCTGCTGCTTTGTTGTATAGTGATGGCTCTGCACCTCGCAACAGGGCTGGATGCTGCCCCGGGGGTGGCGAACActacagaggaggaggtggaaggggtGGACTCCCAGTCACCATGCCCAGCCGGGTGGCATCAGAATGAGCATCGCTGCTTCTCCTTCTACCCCGTCTGGGCCACCTGGGCcactgcagagTTGTACTGCTCCCAGCACAGAGGGAACCTGGTGTCTGTTCACAGCCCGGGTCAACAGGTGTTTGTCCAGGATCTGGTAAGGAGACACACAGACCAGCCGGTCTGGATGGGAGGCTACGATGCAGCTCAGGAGGGGATGTGGCTGTGGAGTGACGGCTCAGCTGTTGACAGTTTCTACTGGGAGGAGGATGAGCCCAGTAACTCTGGACAGGGGGAGAACTGTATGGAGCTACACACTGgagGTGGGCAGGGCTGGAATGACGTGTCCTGTGCAGAGCTGAGGTTCTATGTGTGTTCTATGgagacaagATCTGGTTTAGCATCATTGCCAAGTCAGAAGAAAAAACACGAGAGAGaGTTGGTTGAAGAGGTGAGTATTTATGACGTCCTGTGGGAGACCAGTGAGAGAGTAGCAGATGAGATCCTCTACTCAGCCTTCCTCAGAGGGATGTATTCCAGACGTCTGCCTGCCCGCTGCTATGCTGACTTCTGCCACCAGGAGGTGCTATACCTGGATAGAGTCATCCCCATGCTGCGGGTGCTGATCAGAACAGTCCAGGGTCCTCCAGACATCATGCTGTTTCTCCAGAGAACACATCAACGCTACCAGGAGTCTCTGAAGGAGGCCCAGAACCAAACTCCACCACACCTGAACCTGTCCTCAATCCAGCCCTCTGCAGCTGTGCGTCAGTACCTCCAGAGCTTCCATGACATTGTGAATGAGGAGCCCATCTACTGGCTGGTGTCTCTGCTGCCCAGAGCCCTGCTCAGACCTTACCTGGCACAGAACCTGCCcctgggagagaggagcagaccagGCCCCAGCCCCTGCGTCTACCCCTGGCTAAgcctcttcccctgcccctgctACCAGTGGGGGGGTGAGGACATGAAGCCAGACCAGAGGAACCAGAAGGACAAGTCAGGGACATATTACAGgcatcTACTGGAGAAGTACCAGGATGTGATAGACGTCTACAAGGCTGTCAACATCTTCAGAGTCCAGATGATCAACGAGAAGGCTCTCTTCACCTCCAGCTGGTTTCCCACTGgtgacgaggaggaagaggaggaccaacCCAACCTGTTGTCTGTGGAGTCTGGTCCTGACGTTAGGGTGAAGCTGTAGCAGTGCAGCTGTAGAATACAGGGGGCTGTGTGTGtaaggctgtgtgtgttggcttTCACACTGGGCAGGACTGTTCATCTTGTCAGACATATTCCAATATTCCACTTTTATGTTGGTAACTTCCCCCAAATAACTACTGTTCAGACTGTATTAATGCAATAACATAATGAATGTACACATCTAATAACACATTTAATTATTGTCAACAAAGGAGctacaataaaataaataacatttaggTAATAAAATCATAGAATGAAACTGT
>XM_036945449.1
TCTGATTCTGAGCTTCACTACCAAGAccaagctactactactactgtcactgtGTTTCTAGCCAGCTCAGGTACTCTCAACATTCTCTGATTCTGAGCTTCACTACCAAGAccaagctactactactactgtcactgtGTTTCTAGCCAGCTCAGGTACTCTCAACATTCTCTGATTCTGAGCTTCACTACCAAGACCAAgctactactactgtcactgtGTTTCTAGCCAGCTCAGGTCGGTTGGCAGAATGTCTCTGCTGCTTTGTTGTATAGTGATGGCTCTGCACCTCGCAACAGGGCTGGATGCTGCCCCGGGGGTGGCGAACActacagaggaggaggtggaaggggtGGACTCCCAGTCACCATGCCCAGCCGGGTGGCATCAGAATGAGCATCGCTGCTTCTCCTTCTACCCCGTCTGGGCCACCTGGGCcactgcagagTTGTACTGCTCCCAGCACAGAGGGAACCTGGTGTCTGTTCACAGCCCGGGTCAACAGGTGTTTGTCCAGGATCTGGTAAGGAGACACACAGACCAGCCGGTCTGGATGGGAGGCTACGATGCAGCTCAGGAGGGGATGTGGCTGTGGAGTGACGGCTCAGCTGTTGACAGTTTCTACTGGGAGGAGGATGAGCCCAGTAACTCTGGACAGGGGGAGAACTGTATGGAGCTACACACTGgagGTGGGCAGGGCTGGAATGACGTGTCCTGTGCAGAGCTGAGGTTCTATGTGTGTTCTATGgagacaagATCTGGTTTAGCATCATTGCCAAGTCAGAAGAAAAAACACGAGAGAGaGTTGGTTGAAGAGGTGAGTATTTATGACGTCCTGTGGGAGACCAGTGAGAGAGTAGCAGATGAGATCCTCTACTCAGCCTTCCTCAGAGGGATGTATTCCAGACGTCTGCCTGCCCGCTGCTATGCTGACTTCTGCCACCAGGAGGTGCTATACCTGGATAGAGTCATCCCCATGCTGCGGGTGCTGATCAGAACAGTCCAGGGTCCTCCAGACATCATGCTGTTTCTCCAGAGAACACATCAACGCTACCAGGAGTCTCTGAAGGAGGCCCAGAACCAAACTCCACCACACCTGAACCTGTCCTCAATCCAGCCCTCTGCAGCTGTGCGTCAGTACCTCCAGAGCTTCCATGACATTGTGAATGAGGAGCCCATCTACTGGCTGGTGTCTCTGCTGCCCAGAGCCCTGCTCAGACCTTACCTGGCACAGAACCTGCCcctgggagagaggagcagaccagGCCCCAGCCCCTGCGTCTACCCCTGGCTAAgcctcttcccctgcccctgctACCAGTGGGGGGGTGAGGACATGAAGCCAGACCAGAGGAACCAGAAGGACAAGTCAGGGACATATTACAGgcatcTACTGGAGAAGTACCAGGATGTGATAGACGTCTACAAGGCTGTCAACATCTTCAGAGTCCAGATGATCAACGAGAAGGCTCTCTTCACCTCCAGCTGGTTTCCCACTGgtgacgaggaggaagaggaggaccaacCCAACCTGTTGTCTGTGGAGTCTGGTCCTGACGTTAGGGTGAAGCTGTAGCAGTGCAGCTGTAGAATACAGGGGGCTGTGTGTGtaaggctgtgtgtgttggcttTCACACTGGGCAGGACTGTTCATCTTGTCAGACATATTCCAATATTCCACTTTTATGTTGGTAACTTCCCCCAAATAACTACTGTTCAGACTGTATTAATGCAATAACATAATGAATGTACACATCTAATAACACATTTAATTATTGTCAACAAAGGAGctacaataaaataaataacatttaggTAATAAAATCATAGAATGAAACTGT
>XM_036945447.1
CTCTGATTCTGAGCTTCACTACCAAGAccaagctactactactactgtcactgtGTTTCTAGCCAGCTCAGGTACTCTCAACATTCTCTGATTCTGAGCTTCACTACCAAGAccaagctactactactactgtcactgtGTTTCTAGCCAGCTCAGGTACTCTCAACATTCTCTGATTCATGTACAGGTCGGTTGGCAGAATGTCTCTGCTGCTTTGTTGTATAGTGATGGCTCTGCACCTCGCAACAGGGCTGGATGCTGCCCCGGGGGTGGCGAACActacagaggaggaggtggaaggggtGGACTCCCAGTCACCATGCCCAGCCGGGTGGCATCAGAATGAGCATCGCTGCTTCTCCTTCTACCCCGTCTGGGCCACCTGGGCcactgcagagTTGTACTGCTCCCAGCACAGAGGGAACCTGGTGTCTGTTCACAGCCCGGGTCAACAGGTGTTTGTCCAGGATCTGGTAAGGAGACACACAGACCAGCCGGTCTGGATGGGAGGCTACGATGCAGCTCAGGAGGGGATGTGGCTGTGGAGTGACGGCTCAGCTGTTGACAGTTTCTACTGGGAGGAGGATGAGCCCAGTAACTCTGGACAGGGGGAGAACTGTATGGAGCTACACACTGgagGTGGGCAGGGCTGGAATGACGTGTCCTGTGCAGAGCTGAGGTTCTATGTGTGTTCTATGgagacaagATCTGGTTTAGCATCATTGCCAAGTCAGAAGAAAAAACACGAGAGAGaGTTGGTTGAAGAGGTGAGTATTTATGACGTCCTGTGGGAGACCAGTGAGAGAGTAGCAGATGAGATCCTCTACTCAGCCTTCCTCAGAGGGATGTATTCCAGACGTCTGCCTGCCCGCTGCTATGCTGACTTCTGCCACCAGGAGGTGCTATACCTGGATAGAGTCATCCCCATGCTGCGGGTGCTGATCAGAACAGTCCAGGGTCCTCCAGACATCATGCTGTTTCTCCAGAGAACACATCAACGCTACCAGGAGTCTCTGAAGGAGGCCCAGAACCAAACTCCACCACACCTGAACCTGTCCTCAATCCAGCCCTCTGCAGCTGTGCGTCAGTACCTCCAGAGCTTCCATGACATTGTGAATGAGGAGCCCATCTACTGGCTGGTGTCTCTGCTGCCCAGAGCCCTGCTCAGACCTTACCTGGCACAGAACCTGCCcctgggagagaggagcagaccagGCCCCAGCCCCTGCGTCTACCCCTGGCTAAgcctcttcccctgcccctgctACCAGTGGGGGGGTGAGGACATGAAGCCAGACCAGAGGAACCAGAAGGACAAGTCAGGGACATATTACAGgcatcTACTGGAGAAGTACCAGGATGTGATAGACGTCTACAAGGCTGTCAACATCTTCAGAGTCCAGATGATCAACGAGAAGGCTCTCTTCACCTCCAGCTGGTTTCCCACTGgtgacgaggaggaagaggaggaccaacCCAACCTGTTGTCTGTGGAGTCTGGTCCTGACGTTAGGGTGAAGCTGTAGCAGTGCAGCTGTAGAATACAGGGGGCTGTGTGTGtaaggctgtgtgtgttggcttTCACACTGGGCAGGACTGTTCATCTTGTCAGACATATTCCAATATTCCACTTTTATGTTGGTAACTTCCCCCAAATAACTACTGTTCAGACTGTATTAATGCAATAACATAATGAATGTACACATCTAATAACACATTTAATTATTGTCAACAAAGGAGctacaataaaataaataacatttaggTAATAAAATCATAGAATGAAACTGT
>XM_036945450.1
TTTCACTCCTCCTCCTTAACAGTGACTAATCCAAGCCAGAAGCAAGAGCAGATGCTCTGAGCTTCACTACCAAGAccaagctactactactactgtcactgtGTTTCTAGCCAGCTCAGGTCGGTTGGCAGAATGTCTCTGCTGCTTTGTTGTATAGTGATGGCTCTGCACCTCGCAACAGGGCTGGATGCTGCCCCGGGGGTGGCGAACActacagaggaggaggtggaaggggtGGACTCCCAGTCACCATGCCCAGCCGGGTGGCATCAGAATGAGCATCGCTGCTTCTCCTTCTACCCCGTCTGGGCCACCTGGGCcactgcagagTTGTACTGCTCCCAGCACAGAGGGAACCTGGTGTCTGTTCACAGCCCGGGTCAACAGGTGTTTGTCCAGGATCTGGTAAGGAGACACACAGACCAGCCGGTCTGGATGGGAGGCTACGATGCAGCTCAGGAGGGGATGTGGCTGTGGAGTGACGGCTCAGCTGTTGACAGTTTCTACTGGGAGGAGGATGAGCCCAGTAACTCTGGACAGGGGGAGAACTGTATGGAGCTACACACTGgagGTGGGCAGGGCTGGAATGACGTGTCCTGTGCAGAGCTGAGGTTCTATGTGTGTTCTATGgagacaagATCTGGTTTAGCATCATTGCCAAGTCAGAAGAAAAAACACGAGAGAGaGTTGGTTGAAGAGGTGAGTATTTATGACGTCCTGTGGGAGACCAGTGAGAGAGTAGCAGATGAGATCCTCTACTCAGCCTTCCTCAGAGGGATGTATTCCAGACGTCTGCCTGCCCGCTGCTATGCTGACTTCTGCCACCAGGAGGTGCTATACCTGGATAGAGTCATCCCCATGCTGCGGGTGCTGATCAGAACAGTCCAGGGTCCTCCAGACATCATGCTGTTTCTCCAGAGAACACATCAACGCTACCAGGAGTCTCTGAAGGAGGCCCAGAACCAAACTCCACCACACCTGAACCTGTCCTCAATCCAGCCCTCTGCAGCTGTGCGTCAGTACCTCCAGAGCTTCCATGACATTGTGAATGAGGAGCCCATCTACTGGCTGGTGTCTCTGCTGCCCAGAGCCCTGCTCAGACCTTACCTGGCACAGAACCTGCCcctgggagagaggagcagaccagGCCCCAGCCCCTGCGTCTACCCCTGGCTAAgcctcttcccctgcccctgctACCAGTGGGGGGGTGAGGACATGAAGCCAGACCAGAGGAACCAGAAGGACAAGTCAGGGACATATTACAGgcatcTACTGGAGAAGTACCAGGATGTGATAGACGTCTACAAGGCTGTCAACATCTTCAGAGTCCAGATGATCAACGAGAAGGCTCTCTTCACCTCCAGCTGGTTTCCCACTGgtgacgaggaggaagaggaggaccaacCCAACCTGTTGTCTGTGGAGTCTGGTCCTGACGTTAGGGTGAAGCTGTAGCAGTGCAGCTGTAGAATACAGGGGGCTGTGTGTGtaaggctgtgtgtgttggcttTCACACTGGGCAGGACTGTTCATCTTGTCAGACATATTCCAATATTCCACTTTTATGTTGGTAACTTCCCCCAAATAACTACTGTTCAGACTGTATTAATGCAATAACATAATGAATGTACACATCTAATAACACATTTAATTATTGTCAACAAAGGAGctacaataaaataaataacatttaggTAATAAAATCATAGAATGAAACTGT

Function

NR:

description
uncharacterized protein LOC110510817

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945451.1 False 1756 mRNA 0.52 14 78599589 78623089
XM_036945448.1 False 1759 mRNA 0.52 13 78599590 78623088
XM_036945449.1 False 1841 mRNA 0.52 13 78599590 78623088
XM_036945447.1 False 1791 mRNA 0.52 14 78599590 78623089
XM_036945450.1 True 1723 mRNA 0.52 13 78599590 78623477

Neighbor

gene id symbol gene type direction distance location
LOC118938869 NA coding downstream 25267 78573540 ~ 78574322 (-)
LOC118938867 LOC106576670 coding downstream 147085 78298576 ~ 78452504 (-)
LOC118938865 mkrn1 coding downstream 405338 78159791 ~ 78194251 (-)
LOC118938864 LOC106576660 coding downstream 442506 78148973 ~ 78157083 (-)
LOC118938863 NA coding downstream 574659 78024443 ~ 78024930 (-)
LOC118938904 LOC106592658 coding upstream 14434 78637911 ~ 78639774 (-)
LOC118936340 LOC106592244 coding upstream 53917 78677394 ~ 78695781 (-)
LOC118938905 NA coding upstream 255263 78878740 ~ 78918133 (-)
LOC118938873 LOC106590959 coding upstream 683703 79307180 ~ 79340005 (-)
LOC110536863 LOC105029310 coding upstream 863526 79487003 ~ 79489128 (-)
G1328680 NA non-coding downstream 42445 78556843 ~ 78557144 (-)
G1328666 NA non-coding downstream 78499 78520827 ~ 78521090 (-)
G1328665 NA non-coding downstream 78843 78520547 ~ 78520746 (-)
G1328664 NA non-coding downstream 79207 78520175 ~ 78520382 (-)
G1328522 NA non-coding downstream 130207 78469083 ~ 78469382 (-)
G1328717 NA non-coding upstream 38341 78661818 ~ 78662220 (-)
G1328719 NA non-coding upstream 40018 78663495 ~ 78663885 (-)
G1328723 NA non-coding upstream 46009 78669486 ~ 78708091 (-)
G1328737 NA non-coding upstream 76107 78699584 ~ 78707685 (-)
G1328743 NA non-coding upstream 89356 78712833 ~ 78716008 (-)
G1328123 NA other downstream 724985 77871279 ~ 77874604 (-)
LOC110515635 LOC106576658 other downstream 1092815 77418263 ~ 77506802 (-)
G1326996 NA other downstream 2600589 75998506 ~ 75999000 (-)
G1326164 NA other downstream 3546232 75052749 ~ 75053357 (-)
G1328815 NA other upstream 139622 78763099 ~ 78766048 (-)
G1328861 NA other upstream 246848 78870325 ~ 78871031 (-)
G1328892 NA other upstream 302437 78925914 ~ 78926137 (-)
G1328987 NA other upstream 406190 79029667 ~ 79030956 (-)
G1329004 NA other upstream 451813 79075290 ~ 79075536 (-)

Expression


Co-expression Network