LOC118938904 (LOC106592658)


Basic Information

Item Value
gene id LOC118938904
gene name LOC106592658
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 78637911 ~ 78639774 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945565.1
atGAGGCCAGCTGTTCTGGTGGCTGGTGGTAGCCCAAGGTTGGTGGTGGTGGCCCAAGGTTGCTGGTGGTGGCTGGTGGTGCCCCAAGGTGGCTGGTGGTGCCCCAAGGTGGCTGGTGGAGGCCCAAGGTGGCTGGTGGAGGCCCAAGGTGGCTGGTGGAGAACCAAGGTGGCTGATGGAGGCCCAAGGTGGCTGGTGGTGGCCCAAGGTGGCTGGTGGTGGACCAAGGTGGCTGGTGGTGGCCCAAGGTTGCTGGTGGTGGCCCAAGGTTGCTGGTGGTGGCCCAAGGTGGCTGGTGGTGGACCAAGGTGGCTGGTGGAGGACCAAAGGTGGCTGGTGGAGGACCAAAGATACGTCCGCTTTCTCAGAGATTTCCTGGAGACAGCAGAGAAGCACTTCCTGGTCGACTTCAACGTGCGCTACTACGTTTTCACAGATCGTCCTGACGATGTTCCGTCAGTGAACCTGTCTCAGGGGAGACATTTGAGTGTGATCCAGGTGCCAGGTTCAAACCGCTGGCAGGAGATATCAGCCCGGAGGATGGAGATCATCCAGACAGCCATCGAACGTCAGATCAGCAGGGAGGCCGACTACATCTTCTGTCTGGACGTGGACAGCAAGTTCCACGCTCGCTGGGGAGCCGAGTCTCTGGGCAGGCTGGTTGCTGTGATTCACCCATGGTTCTACCAGGTGACCCGTGACCACTTCACATACGAACGGCGTCCAGCCTCGACAGCTTACATCCCCATGGATGAGGGAGATTACTACTATGCCGGGGCCGTGTTCGGTGGGTTGTTGGAGGAAGTGTACACACTAACAAAGGTATGTCGGAACCAGCTTGAAGAGGATGCGAGGAATTCCATCGAGGCTGCCTGGCAGGAGGAGAGTCACCTCAACAGGTACCTGCTTTACAACAAGCCCAGCAAGCTGTTGTCTCCAGAGTACCAGTGGGATGACAAGAAGACCAAAACCAAAGAGGTCAAAGTAATTCGCTTCTCTTCTGTCGTTAAAAACTATGCTGAAATTCGTCCCAATGTATAGGACTAGGAATTGGATATTCGACCGACAGAAGAAAAACTTAATAGATTATGGTTAATGTTAGGTTAAGTTCAGGTATAGCTTCactgaggttagggttaaggttaggttaggttaagtTCAGGTATAGCTTCACTGAGGTTTGGGTTAATGTTAGGTTAAGTTCAGGTATAGCTTCACtgaggtttgggttaaggttaggttaggttaagtTCAGGTATAGCTTCACTGAGGTTTGGGTTAATGTTAGGTTAAGTACAGGTATAGCTTCACTGatgtttgggttaaggttaggttaagttcAGGTATAGCTTCACTGAGGTTTGGGTTAATGTTAGGTTAAGTTCAGGTATAGCTTCACTGAGGTTTGGGTTAAGTTTAGGGAAAGGTATAAAATGTCACATTGGATATACAGCTGTCCGGCCCCATTCATTTTGTGTTGGTGAAATATATACACTGACATAAAACTACTAttttaaatatactgtatatcagtcACTGTTGTAGTTTGGGGATAATAACGTTCTTCATTTATAGGaaattaaatatgttttattaCCTTATTCATCCTGTATTCTGTAGCCTATCTACTGTATGTTGATTACTGGTAAAAACATCAATAAATataatgtt

Function

NR:

description
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945565.1 True 1671 mRNA 0.49 3 78637911 78639774

Neighbor

gene id symbol gene type direction distance location
LOC118938870 LOC106592244 coding downstream 14434 78599589 ~ 78623477 (-)
LOC118938869 NA coding downstream 63589 78573540 ~ 78574322 (-)
LOC118938867 LOC106576670 coding downstream 185407 78298576 ~ 78452504 (-)
LOC118938865 mkrn1 coding downstream 443660 78159791 ~ 78194251 (-)
LOC118938864 LOC106576660 coding downstream 480828 78148973 ~ 78157083 (-)
LOC118936340 LOC106592244 coding upstream 37620 78677394 ~ 78695781 (-)
LOC118938905 NA coding upstream 238966 78878740 ~ 78918133 (-)
LOC118938873 LOC106590959 coding upstream 667406 79307180 ~ 79340005 (-)
LOC110536863 LOC105029310 coding upstream 847229 79487003 ~ 79489128 (-)
LOC118938874 NA coding upstream 969772 79609180 ~ 79612871 (-)
G1328680 NA non-coding downstream 80767 78556843 ~ 78557144 (-)
G1328666 NA non-coding downstream 116821 78520827 ~ 78521090 (-)
G1328665 NA non-coding downstream 117165 78520547 ~ 78520746 (-)
G1328664 NA non-coding downstream 117529 78520175 ~ 78520382 (-)
G1328522 NA non-coding downstream 168529 78469083 ~ 78469382 (-)
G1328717 NA non-coding upstream 22044 78661818 ~ 78662220 (-)
G1328719 NA non-coding upstream 23721 78663495 ~ 78663885 (-)
G1328723 NA non-coding upstream 29712 78669486 ~ 78708091 (-)
G1328737 NA non-coding upstream 59810 78699584 ~ 78707685 (-)
G1328743 NA non-coding upstream 73059 78712833 ~ 78716008 (-)
G1328123 NA other downstream 763307 77871279 ~ 77874604 (-)
LOC110515635 LOC106576658 other downstream 1131137 77418263 ~ 77506802 (-)
G1326996 NA other downstream 2638911 75998506 ~ 75999000 (-)
G1326164 NA other downstream 3584554 75052749 ~ 75053357 (-)
G1328815 NA other upstream 123325 78763099 ~ 78766048 (-)
G1328861 NA other upstream 230551 78870325 ~ 78871031 (-)
G1328892 NA other upstream 286140 78925914 ~ 78926137 (-)
G1328987 NA other upstream 389893 79029667 ~ 79030956 (-)
G1329004 NA other upstream 435516 79075290 ~ 79075536 (-)

Expression


Co-expression Network