XLOC_031662


Basic Information

Item Value
gene id XLOC_031662
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 68890477 ~ 68893011 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062152
TAAGAGTGtcgttaatgacattttaataacaaactCAGCTTTTAGTTATAAAAAGCATGACATAACTGTAATGGCttcatgacagtcatgtttatgacaggtttatgacaagtttcattgtcttggtaatgtcaaattgtcatgacaaagacagaaacaggttgtgatgtatttgtttatgtcaagttgtcatgaacaatgttatctttgcatttaaaacagaGCGAATGGCACTAGTTgtaataagcatgcataaaatctcattcacattcatggtATGTGTCGTGTtgtgattataaaggtgtcatgacagcCTTATGAACACCTAGTTGCTCCCTGGACGAAAGTGAAGGGGGTGGTtatcatgacagtcttatgaacgcCTCCTTCAAGTCGCTCCCTGAACGAAAGTGAAGctgcgcagatgagagcgatgtTTATCAGCCAGTCTGTTTCTGTATGATGATCTCAGATCAGTGATGTCTAAACCAACCTCTTGCAAAAATGTGAACTGCTgcaaaaaaaagagaatatttaTACTCCTATTTACTACAGAATGATTTGAAATCAATATTAACGCAATAGCATAATACTTATTAGAAGGAATGCAAAATGCACACTTGCACAGAAAAGATGTTTTTAATACATcttttaatatacatatatatgattatatttaattAGAATGCTTTGCACTTGCCAATGGGAATTTACGACCTGCTCTTTGGGAACTTTGGGAATCTTTAATGTCATGGATGAACTTCTAGCATCTTAGCAAACAAGACTTCAGGGGGGTGCCTGGGGAAAACGTCTCCTtttctttgtgtatttattatttttattgctctATAGGTCTTTGAATCAGACGAGATTTTAAatgtctatataaatatatagaaatattcaACCCTGTACACCAGCTGAAGATACATTTACagaattaataaagaaataaactcaCAAATG
>TCONS_00061312
gacattttaaatgcaaagatgacattgtttgctatgacaacttgacataagcAAAGACATCACAACAAGATCTTTGTCACGAcagcttgacattaccaagacatcaaaacttgtcataaatgtGTCATAaggcattataattgtgtcatgactATTTCTCTGATCACGTTTTCACTGTATTTGTCATTATAATGCCTCATTAAAAAGTGTCATTACTAAGTCAAATAATATGTAAGAGTGtcgttaatgacattttaatgacaaactcAGCTTGTAGTTATAAAAGGCATGACATAACTGTAATGGCttcatgacagtcatgtttatgacaggtttatgacaagtttcattgtcttggtaatgtcaaattgtcatgacaaagacagaaactggttgtgatgtatttgtttatgtcaagttgtcatgaacaatgtcatctttgcattcaaAACAGAGCAAATGACACTTAGCTGTTATAAGCattcataaaatctcattcacattcatgattTGTCCTGTCATGACTATAAAGGTCTAATGACAGCCTTGTTAACGCCTCCTTTAAGTCGCTCCCTGAACGAAAGTGAAGGAGGTATTTATCATGACTTTCAATGAGATTTTAAGTATGCTTATGACAACTCTTATTAAGGGTCATTTGCTcggttatgacattttaaatgcaaagatgacattgtttgccATGACAACTTGACTTAACAAGCAAAGACATGACAACCAGATCTTTGTTacgacaacttgacattaccaagacatcaaaacttgtcataaatctgtcataaggcattataattgtgtcatgactATTTTTC

Function

GO:

id name namespace
GO:0072330 monocarboxylic acid biosynthetic process biological_process
GO:0099643 signal release from synapse biological_process
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0007267 cell-cell signaling biological_process
GO:0030182 neuron differentiation biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0016185 synaptic vesicle budding from presynaptic endocytic zone membrane biological_process
GO:0048284 organelle fusion biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0017156 calcium-ion regulated exocytosis biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0061025 membrane fusion biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:0070142 synaptic vesicle budding biological_process
GO:0009449 gamma-aminobutyric acid biosynthetic process biological_process
GO:0048666 neuron development biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0050803 regulation of synapse structure or activity biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0051640 organelle localization biological_process
GO:0048699 generation of neurons biological_process
GO:0051648 vesicle localization biological_process
GO:0051650 establishment of vesicle localization biological_process
GO:0051656 establishment of organelle localization biological_process
GO:0016050 vesicle organization biological_process
GO:0045055 regulated exocytosis biological_process
GO:0097060 synaptic membrane cellular_component
GO:0042995 cell projection cellular_component
GO:0042734 presynaptic membrane cellular_component
GO:0043005 neuron projection cellular_component
GO:0030424 axon cellular_component
GO:0098590 plasma membrane region cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0045202 synapse cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0036477 somatodendritic compartment cellular_component
GO:0098793 presynapse cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0017075 syntaxin-1 binding molecular_function
GO:0000149 SNARE binding molecular_function
GO:0015631 tubulin binding molecular_function
GO:0019905 syntaxin binding molecular_function
GO:0005212 structural constituent of eye lens molecular_function
GO:0004351 glutamate decarboxylase activity molecular_function
GO:0008017 microtubule binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000096889

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062152 False 966 lncRNA 0.35 2 68890477 68892779
TCONS_00061312 True 830 lncRNA 0.34 2 68891515 68893011

Neighbor

gene id symbol gene type direction distance location
XLOC_031661 sftpbb coding downstream 14266 68845048 ~ 68876211 (-)
XLOC_031660 C5H2orf68 coding downstream 64300 68817034 ~ 68826177 (-)
XLOC_031659 NA coding downstream 74367 68813923 ~ 68816110 (-)
XLOC_031658 her1 coding downstream 95414 68788658 ~ 68795063 (-)
XLOC_031657 mepce coding downstream 107836 68765883 ~ 68782641 (-)
XLOC_031663 ank1a coding upstream 6462 68899473 ~ 69041102 (-)
XLOC_031664 dre-mir-2188 coding upstream 128848 69021859 ~ 69021962 (-)
XLOC_031665 GANAB coding upstream 247645 69140656 ~ 69180601 (-)
XLOC_031666 mat2ab coding upstream 306187 69199198 ~ 69212184 (-)
XLOC_031667 inpp5jb coding upstream 339219 69232230 ~ 69271450 (-)
XLOC_031656 NA non-coding downstream 221935 68622098 ~ 68668542 (-)
XLOC_031655 LO017735.1 non-coding downstream 272388 68617958 ~ 68618089 (-)
XLOC_031650 CABZ01083943.1 non-coding downstream 676143 68205952 ~ 68214334 (-)
XLOC_031644 NA non-coding downstream 918135 67964507 ~ 67972342 (-)
XLOC_031669 FQ311924.2 non-coding upstream 426967 69319978 ~ 69351280 (-)
XLOC_031681 CT978957.3 non-coding upstream 763383 69656394 ~ 69656508 (-)
XLOC_031682 NA non-coding upstream 785062 69678073 ~ 69696089 (-)
XLOC_031686 NA non-coding upstream 955989 69849000 ~ 69855751 (-)

Expression


Co-expression Network