LOC118938873 (LOC106590959)


Basic Information

Item Value
gene id LOC118938873
gene name LOC106590959
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 79307180 ~ 79340005 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945473.1
ttgatgttgtaagttaTGTCCAGGATCAAAACATTTgtgaccaactatattcattggggTTTGTCTCGTGGAACccgtactaccactactactactactattactgctgcagTCAGCCGACGATGAATTTGCAATTTGCCGAAATTGCTGCTGAGCGCCTGCTGCCGACGTCACTCACGACGCATTTTTGTAGCCAGACACGTGTGTTGTGACTGAGAAcatcgttttttttttgtgtcatttagaggAAAAATGCATTTTTTGCGTTTGAGACACTTTTCAGAAGTTGCTAAAAGttccaaatatttattttaaagTAGCTACATTTGTAGCTAGGTGCTGTTTGAATTTTTTTGTGTGCTAAATCTAGAAACAAAATTGCTACGTTGGCATCACTGATCTCAATCCTGCCGGTTGATGAGACGGTTGGAGCCTCTTTACCGCGGTTCATGTAGCCACATCCTGCACGACAAATCACACACACTATAGATCACTTTCCATAACAACTCAACAGAAAACGTGGACAGTTTGTTAACATACATTTATAAAGGATTTCAAAAAGATCAGGATGTCCAGACGAGGTTGTACCGATCCGACCGGGCTCCGGAGGAAACGGGACATGGAGGAGCACCAGAAGGAGAGAAGACGGGCTCTGCAGGCCCGACACCGGGCCAACCTGGCCACCCTGTTCGAGACACTCAACACCGTGGTCTGCCCCACATCCAACAAGATGCCTGCTAAGTGGAAGATCTTGGACCACGCCAAAGGATTTCTGAAAGAACAGGAAGCCCACCTGAGCAGACTGATGCTCCTGAAAGGGATATTCCTCGGTAATGAAGATGGGCCGTGCAGCTTGGAGGAAGTGAGGGCAGAGTACCGGAGGCTGCAGTCACACAGCAGAAGACCTGGTGGCTTCAGACGTCATGGCGGGGCTGACGGAGAGGACCTGACTGAGACCAGTGAGGAAGACTCTGCAGAGGAGACTCTGGAGGACTCCGCCCCCTCTCAGACCTCCATCAACTCTCGAACCAACATCCTGGAGTTTGAAGGGTACTTGTTGTtctacagacagacactggagAAGTTGGTTTGTAGCGGTGTGCTGAGCCCGGGACAGACTGGTCTGGCTGTAGTATCTGAAGCTATCTCAGGTCTGTGGGATAGCTTCTCTCCAGAGCGCCGGGCAGCCTACCAGACCTGTCCCCCCCAGCAGAGCACCCTGGGCTGGGAAGGGCCGGCAGAGACACCCCCTAATCCTGTTCCAGACACCCACTTCCACCTCACGCTCCAGCCCTCCACTCAGGCAAACAGCCAGGGAGCCTCTTCTCCTTCTAGCTATGAAGAGGACCTGCTTCAGGATGCCTATGATGTGGTGAAGAAAGAGATGGACTCCACTTCAGACCACAGtccTGTCCCGACCTCTCCTCAGTGTGGGGACTTTGACAAGCTCCGGGAGATCTATAAGGACATCATGTGTTTCGTCAAGACTCAGATGGTGGagaaaccagaacataaccaggacctgtaTCTGTCTGCTATGAGGGACCACGAGGAGATCTTTCTCCAGTGCTCCGAGTCCTTCGACAGTGAGGACATGtgaatcacaggaggctgctgacgggaggacggctcatagaaATGTCCGGAAACGAAGcaaatggaatgacatcaaacacccggaaaccatggaaaccatgtgtgaTGTATTTAATGCCGTTCCACCGATTCCGCTCCTGTCATTACCCACAAGCCTGTTCACCAACTTCctgtttctgggaccaatcagaacagttAGAATGTGTTTGATATATTTAATACCGGTCTCCCCAATTAACCTGTTAACCAACTTCctgtttctgggaccaatcagaatgtGTTTGATATATTTAATACGGTTCCACTGATTCAGCTCCAGTCATTACCCAcaagcctgttctccccaattaacctgttaaccaacttcctgtttctgggaccaatcagaatgtgtttgatatatttaataccgttccactgattcagctccagtcattacccacaagcctgttctccccaattaacctgttaaccaacttcctgtttctgggaccaatcagaacagttAGAATGTGTTAATACCGTTCCACTGATTCAGCTCCAGTCATTACCCACAAGCCTGTTCTCCTCAATTAACCTGTTCACCAACTTCCTGTCATGTGAACACCTATTCGTTGTACAAGTGTTTGTTCCTGGTGACATGAAAGACACATTGTGTTGCTTTCTTATGGACTTGATAAATGATCGCGTTTCgggatttgtttttataaatgttcaGCTTTTCCACCCGTTTATAGTTACAGACATGTTTTATAATCTgacattcatgtttctatgtgACGTTTTATAATCTgacattcatgtttctatg
>XM_036945474.1
TTGAGGAAAATAAGGCGCCAGTACTCCCCTAATAATTTCTGTGCCCTTGGTGCGGTGCATTTGGAAGTTTGTTGCTGCCACAGAATCTGAAAAGGCACCTTTGCAAGCCGTACTTTAAATGGTCGCATGCTAGCAGCGAACAAAGCTTTGCAGTGGCCATTGCTATAGTAGCTTCTGCAGTTCTCCACTCTCTTAACCAACTGTGGTGATGTAGACTGCGTTGCGGGGTTGAAAGGTTTTGATTTATTTATATACTTTGGGGTAGCACAATGTTTTTTTGATGTCATAAATTTTTTTGCGAAGCATATCTGATTTACAGTACGCACAGTATGCCCGTCAATCACCCCCAATTACCGGCTTCAGACACCCTATAAATTCAGGATGTCCAGACGAGGTTGTACCGATCCGACCGGGCTCCGGAGGAAACGGGACATGGAGGAGCACCAGAAGGAGAGAAGACGGGCTCTGCAGGCCCGACACCGGGCCAACCTGGCCACCCTGTTCGAGACACTCAACACCGTGGTCTGCCCCACATCCAACAAGATGCCTGCTAAGTGGAAGATCTTGGACCACGCCAAAGGATTTCTGAAAGAACAGGAAGCCCACCTGAGCAGACTGATGCTCCTGAAAGGGATATTCCTCGGTAATGAAGATGGGCCGTGCAGCTTGGAGGAAGTGAGGGCAGAGTACCGGAGGCTGCAGTCACACAGCAGAAGACCTGGTGGCTTCAGACGTCATGGCGGGGCTGACGGAGAGGACCTGACTGAGACCAGTGAGGAAGACTCTGCAGAGGAGACTCTGGAGGACTCCGCCCCCTCTCAGACCTCCATCAACTCTCGAACCAACATCCTGGAGTTTGAAGGGTACTTGTTGTtctacagacagacactggagAAGTTGGTTTGTAGCGGTGTGCTGAGCCCGGGACAGACTGGTCTGGCTGTAGTATCTGAAGCTATCTCAGGTCTGTGGGATAGCTTCTCTCCAGAGCGCCGGGCAGCCTACCAGACCTGTCCCCCCCAGCAGAGCACCCTGGGCTGGGAAGGGCCGGCAGAGACACCCCCTAATCCTGTTCCAGACACCCACTTCCACCTCACGCTCCAGCCCTCCACTCAGGCAAACAGCCAGGGAGCCTCTTCTCCTTCTAGCTATGAAGAGGACCTGCTTCAGGATGCCTATGATGTGGTGAAGAAAGAGATGGACTCCACTTCAGACCACAGtccTGTCCCGACCTCTCCTCAGTGTGGGGACTTTGACAAGCTCCGGGAGATCTATAAGGACATCATGTGTTTCGTCAAGACTCAGATGGTGGagaaaccagaacataaccaggacctgtaTCTGTCTGCTATGAGGGACCACGAGGAGATCTTTCTCCAGTGCTCCGAGTCCTTCGACAGTGAGGACATGtgaatcacaggaggctgctgacgggaggacggctcatagaaATGTCCGGAAACGAAGcaaatggaatgacatcaaacacccggaaaccatggaaaccatgtgtgaTGTATTTAATGCCGTTCCACCGATTCCGCTCCTGTCATTACCCACAAGCCTGTTCACCAACTTCctgtttctgggaccaatcagaacagttAGAATGTGTTTGATATATTTAATACCGGTCTCCCCAATTAACCTGTTAACCAACTTCctgtttctgggaccaatcagaatgtGTTTGATATATTTAATACGGTTCCACTGATTCAGCTCCAGTCATTACCCAcaagcctgttctccccaattaacctgttaaccaacttcctgtttctgggaccaatcagaatgtgtttgatatatttaataccgttccactgattcagctccagtcattacccacaagcctgttctccccaattaacctgttaaccaacttcctgtttctgggaccaatcagaacagttAGAATGTGTTAATACCGTTCCACTGATTCAGCTCCAGTCATTACCCACAAGCCTGTTCTCCTCAATTAACCTGTTCACCAACTTCCTGTCATGTGAACACCTATTCGTTGTACAAGTGTTTGTTCCTGGTGACATGAAAGACACATTGTGTTGCTTTCTTATGGACTTGATAAATGATCGCGTTTCgggatttgtttttataaatgttcaGCTTTTCCACCCGTTTATAGTTACAGACATGTTTTATAATCTgacattcatgtttctatgtgACGTTTTATAATCTgacattcatgtttctatg
>TU1518930
atagaaATGTCCGGAAACGAAGcaaatggaatgacatcaaacacccggaaaccatggaaaccatgtgtgaTGTATTTAATGCCGTTCCACCGATTCCGCTCCTGTCATTACCCACAAGCCTGTTCACCAACTTCctgtttctgggaccaatcagaacagttAGAATGTGTTTGATATATTTAATACCGGTCTCCCCAATTAACCTGTTAACCAACTTCctgtttctgggaccaatcagaatgtGTTTGATATATTTAATACGGTTCCACTGATTCAGCTCCAGTCATTACCCAcaagcctgttctccccaattaacctgttaaccaacttcctgtttctgggaccaatcagaacagttAGAATGTGTTAATACCGTTCCACTGATTCAGCTCCAGTCATTACCCACAAGCCTGTTCTCCTCAATTAACCTGTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945473.1 False 2407 mRNA 0.47 9 79307180 79339577
XM_036945474.1 False 2220 mRNA 0.49 9 79307180 79340005
TU1518930 True 434 lncRNA 0.43 2 79307408 79307954
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118938905 NA coding downstream 389047 78878740 ~ 78918133 (-)
LOC118936340 LOC106592244 coding downstream 611399 78677394 ~ 78695781 (-)
LOC118938904 LOC106592658 coding downstream 667406 78637911 ~ 78639774 (-)
LOC118938870 LOC106592244 coding downstream 683703 78599589 ~ 78623477 (-)
LOC118938869 NA coding downstream 732858 78573540 ~ 78574322 (-)
LOC110536863 LOC105029310 coding upstream 146998 79487003 ~ 79489128 (-)
LOC118938874 NA coding upstream 269541 79609180 ~ 79612871 (-)
LOC110513674 LOC106593057 coding upstream 278497 79618502 ~ 79623426 (-)
LOC118938876 NA coding upstream 332038 79667754 ~ 79691305 (-)
LOC118938877 LOC106594098 coding upstream 351613 79691618 ~ 79695469 (-)
G1329409 NA non-coding downstream 3117 79303480 ~ 79304063 (-)
G1329404 NA non-coding downstream 14207 79291943 ~ 79292973 (-)
G1329399 NA non-coding downstream 19578 79286536 ~ 79287602 (-)
G1329394 NA non-coding downstream 35330 79271429 ~ 79271850 (-)
G1329388 NA non-coding downstream 44918 79261616 ~ 79262262 (-)
G1329424 NA non-coding upstream 8624 79348629 ~ 79482149 (-)
G1329441 LOC106576638 non-coding upstream 69267 79409272 ~ 79409866 (-)
G1329457 NA non-coding upstream 167033 79507038 ~ 79507577 (-)
G1329465 NA non-coding upstream 188223 79528228 ~ 79528451 (-)
G1329472 NA non-coding upstream 195933 79535938 ~ 79536377 (-)
G1329004 NA other downstream 231644 79075290 ~ 79075536 (-)
G1328987 NA other downstream 276224 79029667 ~ 79030956 (-)
G1328892 NA other downstream 381043 78925914 ~ 78926137 (-)
G1328861 NA other downstream 436149 78870325 ~ 78871031 (-)
G1328815 NA other downstream 541132 78763099 ~ 78766048 (-)
G1329475 NA other upstream 202789 79542794 ~ 79543153 (-)
G1329481 NA other upstream 227329 79567334 ~ 79567972 (-)
G1329577 NA other upstream 539403 79879408 ~ 79880360 (-)
LOC110510401 LOC106592932 other upstream 571037 79910682 ~ 80084406 (-)

Expression

LOC118938873(LOC106590959) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 6.
End of interactive chart.

LOC118938873(LOC106590959) Expression in each Bioproject

Bar chart with 15 bars.
LOC118938873(LOC106590959) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
End of interactive chart.

Co-expression Network