LOC110536863 (LOC105029310)


Basic Information

Item Value
gene id LOC110536863
gene name LOC105029310
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 79487003 ~ 79489128 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622541.2
catacagtattgtTTTATCGGCGGAGGGCGCGTTGGATTTGATCCAGCTTTAACTGCTGCTGCTTGTCAGTTCAGCTGTCGGGGTGAAACCGTTGGAGGGGTTATTGTTGTTGGTTCAACACTACAAGTATTTTCCGTTTTTATATTTATAAAGCCTATTTAATGGATACGGTATGGAGATAGCGCTGGTGAGTTTTGAGAACGGCGGAGCGAAAGGAAGCGGTGGCAATGCCGGAGATGTAGCCAGCCGTAACGCGCTGGATCACCCTCAACCTCCGCCGTTTGTCCAGTGTGGACTCAGCGAGCTGGGCTACAGCGGTCACAAAGAGATTAATACAATCGGGAGTCCCAAACCGAGGACGTGGAAAATCAACGATATGAATAACACTTTGAGTTGCAACGAGAACGTGATGGATGCGCTTTGGCGCGCAGACCACAGTCCCCATCTGTTGGACGATGACATGTTGGATATTGAgcgcagagacatggacaacaacGAGAGGGTGCTGATCAACATCGCTGGGTTAAAGTACGAGACACAGCTAGGGACACTCAACCAGTTCCCCGAAACGTTACTGGGGGACCCCTATAAGAGGATCAAATACTTCGACCCGCTCCGGAACGAGTACTTTTTCGACCGTAACCGGCCGAGTTTCGACGGGATCTTATATTTCTATCAGTCGGGAGGTAAGATCAGACGACCTGTCAATGTGTCTATCGACGTGTTCGCCGATGAGATTCGGTTTTACCGACTAGGGGAAGAGGCCATGGAACGGTTTAGAGAAGACGAGGGGTTTattaaagaagaagagaaaccgCTACCGCAGAATGAGTTTCAGAAACAAGTCTGGCTCATATTCGAATATCCGGAGAGTTCCAGCCCGGCGCGAGGCATCGCTATAGTCTCAGTGCTGGTCATCACCATATCCATTATCACATTTTGCATGGAGACACTACCGGAGTTCAGGGACGAGAGGGAGCTACCGGTCACCAGTCGGCCTGGTAACAACACCGTTCCGCGTCCCTCTCTCACATTCACAGACCCTTTCTTCATAGTGGAAACCACTTGCGTGATATGGTTCACTTTTGAATTCATAGTGCGTTTCTTCGCCTGCCCCAGTAAGTCGGAGTTCTCCAAGACCGTCATGAACATCATAGACATCATGTCTATCCTGCCTTACTTCATCACGGTGGGCACAGAGCTGGCGGAGCAGCAGGTGGAGGAACCGCAGGAGCACGGCAACGGACAGACCATGTCTCTGGCCATCCTCAGGGTCATCCGGCTGGTCAGGGTGTTCAGGATCTTCAAGCTGTCCAGACACTCCAAGGGGCTTCAGATATTAGGACAAACCCTCAAAGCCAGTATGAGAGAGTTGGGGTTGCTCATTTTCTTCCTCTTCATCGGAGTCATCCTCTTCTCCAGCGCTGTGTTCTTCGCCGAAGCAGACGAGCCCGAATCGCATTTCTCCAGCATCCCCGACGCCTTCTGGTGGGCCGTGGTCACCATGACAACGGTGGGCTATGGGGACATGAGGCCGGTGACAGTGGGGGGGAAGATAGTGGGCTCTCTCTGCGCCATCGCCGGGGTGCTGACCATCGCGCTGCCGGTGCCTGTCATCGTGTCCAACTTTAACTATTTCTACCACAGGGAGACGGACCAGGACCAGTCTTCTCTGAAAGACGACCCGCCCAACAGCAGTCAGGACAGTCCTCAGTTAAGGAGGAAGGACAGTAAGGGATCTGCCAAGTCGGGAGACGAGGAGGACGGAACAGGAGCGGAGAAGGAGAATATCAAGGCTAACAGCAGCATGAACATTAAACGATCCCTTTACGCGTTCTGTCTGAACAAGACGGAGTCGGACCTGTAgtccccacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagtgactaaTTGAATAGAGAGCAGTGTGTTTTGCTGCGGTGATTTTCAAGCCTCTATCAGTGAGTTGATGTATAAAATCCCTCCTGGTATTAATGGATTTGAAGCCTAAACGAAAGCAGAGCcttgagtcccaaatgacaccctatttcctacacagtgcactacttctcgggcctatgggtcctgg

Function

NR:

description
potassium voltage-gated channel subfamily A member 1-like

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG:

id description
K04878 KCNA5, KV1.5; potassium voltage-gated channel Shaker-related subfamily A member 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622541.2 True 2126 mRNA 0.52 1 79487003 79489128

Neighbor

gene id symbol gene type direction distance location
LOC118938873 LOC106590959 coding downstream 146998 79307180 ~ 79340005 (-)
LOC118938905 NA coding downstream 568870 78878740 ~ 78918133 (-)
LOC118936340 LOC106592244 coding downstream 791222 78677394 ~ 78695781 (-)
LOC118938904 LOC106592658 coding downstream 847229 78637911 ~ 78639774 (-)
LOC118938870 LOC106592244 coding downstream 863526 78599589 ~ 78623477 (-)
LOC118938874 NA coding upstream 120418 79609180 ~ 79612871 (-)
LOC110513674 LOC106593057 coding upstream 129374 79618502 ~ 79623426 (-)
LOC118938876 NA coding upstream 182915 79667754 ~ 79691305 (-)
LOC118938877 LOC106594098 coding upstream 202490 79691618 ~ 79695469 (-)
LOC110510401 LOC106592932 coding upstream 421554 79910682 ~ 80084406 (-)
G1329405 NA non-coding downstream 13 79293512 ~ 79486990 (-)
G1329424 NA non-coding downstream 4854 79348629 ~ 79482149 (-)
G1329441 LOC106576638 non-coding downstream 77137 79409272 ~ 79409866 (-)
G1329409 NA non-coding downstream 182940 79303480 ~ 79304063 (-)
G1329457 NA non-coding upstream 17910 79507038 ~ 79507577 (-)
G1329465 NA non-coding upstream 39100 79528228 ~ 79528451 (-)
G1329472 NA non-coding upstream 46810 79535938 ~ 79536377 (-)
G1329473 NA non-coding upstream 47331 79536459 ~ 79536747 (-)
G1329478 NA non-coding upstream 63397 79552525 ~ 79553825 (-)
G1329004 NA other downstream 411467 79075290 ~ 79075536 (-)
G1328987 NA other downstream 456047 79029667 ~ 79030956 (-)
G1328892 NA other downstream 560866 78925914 ~ 78926137 (-)
G1328861 NA other downstream 615972 78870325 ~ 78871031 (-)
G1328815 NA other downstream 720955 78763099 ~ 78766048 (-)
G1329475 NA other upstream 53666 79542794 ~ 79543153 (-)
G1329481 NA other upstream 78206 79567334 ~ 79567972 (-)
G1329577 NA other upstream 390280 79879408 ~ 79880360 (-)

Expression


Co-expression Network