Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC118938875 |
| gene name | NA |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048579.1 |
| NCBI id | CM023233.2 |
| chromosome length | 81569517 |
| location | 79608818 ~ 79640460 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_005036253.1 | False | 1895 | mRNA | 0.47 | 2 | 79611694 | 79613743 |
| TU1518593 | False | 3665 | lncRNA | 0.46 | 8 | 79608818 | 79640460 |
| TU1518585 | False | 4543 | lncRNA | 0.45 | 4 | 79609181 | 79640460 |
| TU1518586 | False | 2722 | lncRNA | 0.46 | 7 | 79609181 | 79640460 |
| TU1518587 | False | 4255 | lncRNA | 0.45 | 6 | 79609181 | 79640460 |
| TU1518589 | False | 3410 | lncRNA | 0.46 | 7 | 79609181 | 79640460 |
| TU1518590 | False | 3152 | lncRNA | 0.45 | 7 | 79609181 | 79640460 |
| TU1518591 | False | 3170 | lncRNA | 0.46 | 7 | 79609181 | 79640460 |
| TU1518592 | False | 2683 | lncRNA | 0.46 | 6 | 79609181 | 79640460 |
| TU1518594 | True | 4052 | lncRNA | 0.45 | 6 | 79609181 | 79640460 |
79,608,000
79,612,000
79,616,000
79,620,000
79,624,000
79,628,000
79,632,000
79,636,000
79,640,000
79,640,000
79,644,000
79,648,000
79,652,000
79,656,000
79,660,000
79,664,000
79,668,000
79,672,000
NC_048579.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118938872 | large1 | coding | upstream | 318661 | 79148465 ~ 79293033 (+) |
| LOC118938871 | braf | coding | upstream | 784959 | 78780201 ~ 78826735 (+) |
| LOC118936267 | mrps33 | coding | upstream | 847706 | 78749330 ~ 78763988 (+) |
| LOC110510817 | LOC106592244 | coding | upstream | 953475 | 78649574 ~ 78658219 (+) |
| LOC110507940 | LOC106592244 | coding | upstream | 1065534 | 78525988 ~ 78546160 (+) |
| LOC118938878 | NA | coding | downstream | 105133 | 79718876 ~ 79720972 (+) |
| LOC110511598 | LOC106595231 | coding | downstream | 225655 | 79839398 ~ 79880370 (+) |
| LOC118936540 | LOC106591976 | coding | downstream | 495337 | 80109080 ~ 80133699 (+) |
| LOC110517730 | LOC105026518 | coding | downstream | 589397 | 80203140 ~ 80213290 (+) |
| LOC110517212 | rtcb | coding | downstream | 655201 | 80268944 ~ 80284094 (+) |
| G1329152 | NA | non-coding | upstream | 6782 | 79604569 ~ 79604912 (+) |
| G1329146 | NA | non-coding | upstream | 36084 | 79574962 ~ 79575610 (+) |
| G1329142 | NA | non-coding | upstream | 61511 | 79549964 ~ 79550183 (+) |
| G1329139 | NA | non-coding | upstream | 68996 | 79542280 ~ 79542698 (+) |
| G1329137 | NA | non-coding | upstream | 74951 | 79536534 ~ 79536743 (+) |
| G1329159 | NA | non-coding | downstream | 50171 | 79663914 ~ 79664732 (+) |
| G1329160 | NA | non-coding | downstream | 51214 | 79664957 ~ 79667655 (+) |
| G1329161 | NA | non-coding | downstream | 54013 | 79667756 ~ 79672839 (+) |
| G1329176 | NA | non-coding | downstream | 95311 | 79709054 ~ 79710130 (+) |
| G1329179 | NA | non-coding | downstream | 102557 | 79716300 ~ 79716873 (+) |
| G1328968 | NA | other | upstream | 572237 | 79038604 ~ 79039457 (+) |
| G1328201 | NA | other | upstream | 1541291 | 78070029 ~ 78070403 (+) |
| LOC110490691 | arhgef39 | other | upstream | 1593883 | 77958971 ~ 78066964 (+) |
| G1329153 | LOC106593057 | other | downstream | 4654 | 79618397 ~ 79621951 (+) |
| G1329273 | NA | other | downstream | 371850 | 79985593 ~ 79985951 (+) |
| G1329827 | NA | other | downstream | 804721 | 80418464 ~ 80419259 (+) |
| trnaa-ugc-124 | NA | coding | upstream | 1076278 | 78532470 ~ 78532540 (+) |
| G1329865 | NA | other | downstream | 849388 | 80489848 ~ 80490772 (+) |
