LOC110513674 (LOC106593057)


Basic Information

Item Value
gene id LOC110513674
gene name LOC106593057
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 79618502 ~ 79623426 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945476.1
ATCCTGCAACATGCGTTCACATGATTTAAGTATTATATTGTCTGTGGCTCAGTGATACCTTAAACCCCCGGTGTTTGACAGGTGCTACATGTTTATCTAGGCGGGGAGAATGGGTGCGTTACAGCGGTGCGTCTTGGGACGGCCGCGTCATGTTGAGTTCTAGCTCTTCTACTGCACCAAACCAGGAGAGGAGAGCTTTCTATAACGTCGCGTTTCTGCTGATGCGGCAAACTGCAGTGCAGAGCAGAGCGGAGCCGGGAAGGGAAATGGTTGTGtgcttctgctctctctctctcacactgcccCACTAACGTGTTCAGCTCAAACCTTCTCACTCATACCATGTTCATTTCACGACCACGCCGCTGGAGAGCGCAGCCACGCGTGACGGTCAAAAGACCGAGTGGGAACTACTAGTCGGTGTTGCCGTCCGTTGGAGAGGAGCTCAAGTTAACGGCTTTTTAAAATTTTTCTTtcgtattatattatattatattctctCTATTCCTCGTTCGTACCGTTTCTTCAGCATGGTTTTAAATTGCCTGTCAAGAGATTTACGCTTCTTCCAAGGCGGTTCAGAGCCGTTCGGTACCTCAAGAAGGTCGCCCTAGTCGACATTGGAAGCAAATAACACCGGAATAACGTGGCTGATATTAACGGTCGCTCCAGTCGACGTTAGAAGACAATAACACGGGAATAGCGTGGATGATATTAACGGTCGCTCCAGTCGACGTTAGAAGCCAATAACACGGGAATAGCGTGAGTGATATTAACGGTCGCTCCAGTCGACGTTTAGAAGCCAATAACACCGGAATAACGTGGGTGATATTAACGGTCGCTCCAGTCGACGTTAGAAGCCAATAACACGGGAATAGCGTGGATGATATTAACGGAGACAGTACAGTCTATGAATATTTCACCGAAGCTCGTACTGTACAGTGCAGTAAAGTGATATCCGCTACCTTTAAAACAAAAAGCCGGGACTGTAAAGTTGTAGCCGTGGCTGGCGGGTGCACCACCACCAAACGGAAATCCAGGTGGAAGacgaaggagaagaagaagaaggaggagcaGCAATGGAGGACTACTCGGAGAGAGGAGCAAGGGAGCCTTAAGAGGAGCAGCGCTTGGCGAGCTAGCCCTCTGCCTGCCTGGCCCGGGTGAATGCAAAGGGGATTTCTatcagacagaagagagagaggggagaaatcTGAGGCGCGCAGTGAGAGCTACTAGATGCCTGCACCCACCGGGCTGAGCCGAGCATCTCCTGCCGCATAGCGCTGCGCTGAGCCCGGGCAACACCGCCAGGATGACTGTGGTGGCCGGAGATAACATGGATGAGACGTCCACCCTGCCGGGGCACCTGCAGGACACCTACCCACCAGACCACGAGGACCACGAGTGCTGCGAGAGGGTTGTCATTAATATCTCAGGGCTGCGCTTCGAGACCCAGCTAAAGACACTCAGTCAGTTCCCCGAGACGTTACTAGGTAACCCCAAAAAGAGAATGCGCTACTTCGACCCGCTTAGAAACGAGTACTTTTTTGACCGGAACCGACCGAGTTTTGACGCTATTCTATATTACTACCAGTCCGGTGGGCGGTTGAGGAGGCCCGTTAACGTTCCTCTGGATATGTTCTCCGAGGAGATCAAGTTCTACGAGCTCGGGGCAGAGGCCATGGAGAAGTTTAGAGAAGACGAAGGTTTTATTAGAGAAGAGGAAAAACCGTTACCAGAGAAAGAGTTTCAACGACAGGTCTGGTTGCTGTTTGAATACCCGGAGAGTTCGGGACCCGCCAGAGGGATAGCTATAGTATCGGTGATGGTTATCTTAATTTCAATAGTCATATTCTGTTTGGAGACGCTGCCAGAACTCAAAGAGGACCCCAGGGGTAGGATGGAAACTGTAGGCAACGTGACATTCTATTATAAACCAAATATTCTCACCGATCCTTTCTTCATAGTGGAGACCCTGTGTATAATCTGGTTCTCCTTTGAGTTGATTGTGAGGTTCTTCGCCTGCCCTAGCAAGGCAGCTTTCTTTAAAAACATGATGAATACTATAGACATAGTAGCTATCATACCCTACTTCATCACGCTGGGCACCGAGCTGGCAGAGGACCAGGAGGGGAAGGAGAAACCAAGTGAGCAGGCCGCGTCTCTGGCCATCCTCAGGGTCATCCGGCTGGTCAGGGTGTTCAGGATCTTCAAGCTGTCCAGACACTCCAAGGGGCTTCAGATATTAGGACAAACCCTCAAAGCCAGTATGAGAGAGTTGGGGTTGCTCATTTTCTTCCTCTTCATCGGAGTCATCCTCTTCTCTAGCGCTGTCTATTTCGCCGAGGCGGAGGAGAAGGAATCTTTCTTCACAAGCATCCCCGACGCCTTCTGGTGGGCCGTGGTCTCCATGACAACAGTGGGCTACGGGGACATGTACCCGGTGACCATCGGCGGAAAGATAGTGGGCTCGCTCTGCGCCATCGCCGGGGTGCTGACCATCGCGCTGCCGGTGCCTGTGATCGTGTCCAACTTTAACTATTTCTATCAccgggagacggagggagaggagcaggCGCAGCTTCTTAACGTCAGCAACCAGGACCTTAACTCAGACAGCAACTCATCGCGCCGCAGCTCCAACTCTATCGCCAGCAAGTCAGAATACATGGAAATAGACGAAGGGATCAACAATAGCATTGATAACTTTAGGGACGCGAATCTCAGAACTGCTAACTGTACGCCTGTCCTCAACCAGAACTGCGTGAATAAGGGCAAGCTGCTGACTGACGTCTAGAAATATATACATTAATTCTATATGGCAGCGATAGACATCATGGGGATATGAGGACACACCGTTCGTTGTAGATATTGTAGAAACGTTTCGGGAAATGCTTGATTTAACTTCGTTAATAATgcgttttttttttgcatttgcgTTAATTACATTTGAATGAATAGAGAGAAAACTGTTTCACCAAAagaggattaaaaaaaaataaaaaaggtttgTTTGACTCTCAAAATGGGAATGATAAAAGTATTATAGTAACATATTATCTTTATGTTCCTAACGTTATCGGAGATATTCCGGAAAACATCCTGCCGTTGAAATATGACACGGGGAAAACACAACATGACACGGGGAAAACACAACATGACACGGGGAAAACACAACATGACACGGGGAAAACACAACATGACACGGGGAAAACACAACATGACACGGGGAAAACACAACATGATCGTTGAAGAAGAAACGGTTTTGCATGGATAATGGATCATGGATAATGGATCATGGATAATGTATCATGGATCATGGATAATGGATCATGGATAATGTATCATGGATAATGTATCATGGATAATTGTTAATGGATTATGGATAATGGATATGGATAATAATGGATAATGTATCATGGATCATGGATAATTGATAATGGATTATGGATAATGGATTATGGATTACAGTGGAACTTGGGTGAGGGTGAGTTGCGTAATGCACCGGCATCTGCTGAAGAAAGAGAAAAGGAATATGGAATCTCAGCCCGAACCCAACAACCAtctgcagtcagagagagagagagagagagatcgaccAACGTTGTCCGCTAGGTGCAGTTGTTGTTCCGACGATTGCTAGTTACCCGGAGACCTACTGAGTGATCAGCTAAGCACTTTATCACaatagaaacaaacaacaaacaaaacccACACAGAAAACAGAGATTGAACTAAAACACTGGTCTCCTGTTGCCAAGGAGACATGATGAGAAGTGGGGGCTGTTTGTAGACCAGATGACATCTGTAAAACTGCTGCTACTTTCTATCCCAGCAGATGCTGAAACTAAAAACACCTGCTCTAATCCCACAGGGGTGTGACGATAACACGATGATGATGATGCCATGCGAGATAATAATCTTcattaagaaaaatatatatataaaaaaaaagctTGAAATTAGCATGTTGAGACACTGTTTTATATTACTGGCATGCGCGACACATCACAGTAATGTTGCATTATTTGTATaatttaaaacaacaacaacagcctgtATTATATTCTCCTCCCAAAACCGGATCCAAGACGAACCAATTCACTCTTTTTATGTGtttgggtttctctctctctctcatttaggTTTCACCAAAAGTGCACTGCTTATTTATTATTTAAGTTATTACTTATTTAGGAGCATTTAAGAGCTGAATGTTAAATCTTAAGGGAACAGAAACatctttatttatgtattttttggGAAGATCATGGCATGTCAAACTACTGCATTACGGCCTACCTGACTACGGTACCATGTATCCTGGGTGATTTCATGCATGACGTCAGTGTTTCAATAGCTTGTCGAGGGACCTTGGTGAATACAGCACGGTGTGACGGAACTACTGTTtagactggacaggacaggacaggacacaccTCAACCATATCttaaacagaggaggagacataCCGGGATACcaacccctc

Function

NR:

description
potassium voltage-gated channel subfamily A member 1-like

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG:

id description
K04874 KCNA1, KV1.1; potassium voltage-gated channel Shaker-related subfamily A member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945476.1 True 4493 mRNA 0.46 2 79618502 79623426

Neighbor

gene id symbol gene type direction distance location
LOC118938874 NA coding downstream 5631 79609180 ~ 79612871 (-)
LOC110536863 LOC105029310 coding downstream 129374 79487003 ~ 79489128 (-)
LOC118938873 LOC106590959 coding downstream 278497 79307180 ~ 79340005 (-)
LOC118938905 NA coding downstream 700369 78878740 ~ 78918133 (-)
LOC118936340 LOC106592244 coding downstream 922721 78677394 ~ 78695781 (-)
LOC118938876 NA coding upstream 48617 79667754 ~ 79691305 (-)
LOC118938877 LOC106594098 coding upstream 68192 79691618 ~ 79695469 (-)
LOC110510401 LOC106592932 coding upstream 287256 79910682 ~ 80084406 (-)
LOC110510850 NA coding upstream 511528 80133088 ~ 80139431 (-)
LOC110510397 LOC106596262 coding upstream 527591 80151017 ~ 80231658 (-)
G1329494 NA non-coding downstream 10927 79605318 ~ 79607575 (-)
G1329484 NA non-coding downstream 13622 79604612 ~ 79604880 (-)
G1329492 NA non-coding downstream 23011 79595213 ~ 79595491 (-)
G1329490 NA non-coding downstream 28170 79588644 ~ 79590332 (-)
G1329514 NA non-coding upstream 52097 79675523 ~ 79679348 (-)
G1329527 NA non-coding upstream 96135 79719561 ~ 79721145 (-)
G1329495 NA non-coding upstream 98076 79721502 ~ 79751236 (-)
G1329528 NA non-coding upstream 100933 79724359 ~ 79725951 (-)
G1329481 NA other downstream 50530 79567334 ~ 79567972 (-)
G1329475 NA other downstream 75349 79542794 ~ 79543153 (-)
G1329004 NA other downstream 542966 79075290 ~ 79075536 (-)
G1328987 NA other downstream 587546 79029667 ~ 79030956 (-)
G1328892 NA other downstream 692365 78925914 ~ 78926137 (-)
G1329577 NA other upstream 255982 79879408 ~ 79880360 (-)

Expression


Co-expression Network