LOC118938876


Basic Information

Item Value
gene id LOC118938876
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 79667754 ~ 79691305 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036254.1
GTCACCACCCCCATATCACCTGAACCCCCTCCCCATATCACCTGAACCCCCTCCCCATATCACCTGAACCCCCTCCAACCCCTTTCTACCAGTCATGCTGTGGTGCATCTCAGCTAAAAGAGGTGGAATCATAGAACCTTTGGAATAGATTCTGACAGACGTCACTGCGTCACGAGCGTACGGATGACTGACTCAGCTCCCCCCCGTTGGTTGGATTTACCAGGGGAGGGGGCGGGGACCTGCTGCAGATGACAGATGCAGAAGCCAATCAGGTTGGAATCAATAGCAAAAAAAACCGACATAGACCAACAGACCCTTGGATGATAAAACAGGGCGGCCAACTGCTCAGACGCCCGGACTACAACGTCTCCTGGAATTATGACGTGGGACGATGGCCGCTGCAGGAGAGACAGTCACGTGGAGGTTGGTGGAAGATGAGCAGTCCTTCTGCTGTATGACAGCTTCCTAAAACACCCCGCGGTTTCCCATCCCACGACCCCTGGAGACCTCCCACGACCCCTGGAGACCTCCCACGACCCCTGGAGACCTCCCACGACCCCTGGAGACCTCCTCAACAAGGAGAAAAACACCATCGCTGTCTTTTACCTCTGAGACGAGGAACGGATGAAATACACAATGGATTAGATGAGGAAAACCCCTGACTCACTGGAGGACAGGGCTCTGACATGCCTTTCCATTagggacaacatcactgacaggatatagaatacaccatgGATTAGATGAGGAAACCCCTGACTCACTGGAGGACAGGGCTCTGACATGCCTTTCCATTAGGGACAACATCacctgacaggatatagaatacacatGGACAACATCacctgacaggatatagaatacacatGGATTAGATGAGGAAACCCCTGACTCACTGGAGGACAGGGCTCTGACATGCCTTTCCATTAGGGACAACATCacctgacaggatatagaatacacatGGACAACATCacctgacaggatatagaatacacatGGATTAGATGAGGAAACCCCTGACTCACTGGAGGACAGGGCTCTGACATGCCTTTCCATTagggacaacatcactgacaggatatagaatacaccatgGATTAGATGAGGAAACCCCTGACTCACTGGAGGACAGGGCTCTGACATGCCTTTCCATTAGGGACAACATCacctgacaggatatagaatacacatGGACAACATCacctgacaggatatagaa
>TU1519001
atacacctggacaacatcacctgacaggatatagaatacacctggacaacatcactgacaggatatagaatacacctggacaacatcactgacaggatatagaatacaccacatGGACAATGTGTCTGACACAGATTTAACTGTGTGGACAACATTACTGACAGAGATTCAAACCAGGTGGACATCAATCTGTCTGATATAGACAGGAGACAGCAGCACTGATCTGATgacctgcagagaggagaggagacaaacagacagagatttAAACCAGGTGGACATCAATCTGTCTGATATGGACAGGAGACAGCCTCACTGCTCTGATgacctgcagagaggagaggagacaaacagacagaggtacAGGAGACGTTACTTGAATCACCTTCCACAACACATGAATAATGACATGTGTAAACCCACTGATCGTGGTACCCTTTGTTTGATGTGTGTCAACATGACCCCGGGACAACACACTCCTTCTAAGGCTGAGAAACAGGTGTGTGAAAATGTATGACAGATAATGACGACTatacgaggggggggggggggggggggggttctctctgTATGTAGACATTGAATAATGTAATGTATAGATATGACATCAATAAGACAATGTTCTGTATGTAGACATCGAATCATATCGTGTTCTGTATAGATATGACATCAATAAGACGATGTTCTGTATGTAGACATCGAATCATATCGTGTTCTGTATAGATATGACATCAATAAGACGATGTTCTGTATGTAGACATCGAATCATATCGTGTTCTGTATAGATATGACATCAATAAGACAATGTTCTGTATGTAGACATCGAATCATATCGTGTTCTGTATAGATATGACATCAATAAGACGAGGTTCTGTATGTAGACATCGAATCATATCGTGTTCTGTATAGATATGACATCAATAAGACGATGTTCTGTATGTAGACATCGAATCATATCGTGTTCTGTATAGATATGACATCAATAAGACGATGTTCTGTATGTAGACATCGAATCATATCGTGTTCTGTATAGATATGACATCAATAAGACGATGTTCTGTATGTAGACATCGAATCATATCATGTTCTGTATAGATATGACATCAATAAGACGATGTTCTGTATGTAGACATCGAATCATATCATGTTCTGGTACTAAAACATATTATTGAAAACATGTACAGCTGGTAAGCCAGAAATAAAGACAGACCGTAGTTTTAATTCTGTGTCAACAAACTGTTCTAAAAAATACCTATCTGTTCTTCTCGGCTCTGTTGAGACTCGTGGAGTTATTGCATTGTTAAATCTCTATTTTTTTAAGGt
>TU1519000
gacaacatcactgacaggatatagaatacacctggacaacaacactgacaggatatagaatacacctggacaacatcactgacaggatatagaatacacctggacaacatcactgacaggatacagaatacacctggacaacatcactgacaggatatagaatacacctggacaacatcactgacaggatacagaatacacctggacaacatcactgacaggatatagaatacaccacatGGACAATGTGTCTGACACAGATTTAACTGTGTGGACAACATTACTGACAGAGATTCAAACCAGGTGGACATCAATCTGTCTGATATAGACAGGAGACAGCAGCACTGATCTGATgacctgcagagaggagaggagacaaacagacagagatttAAACCAGGTGGACATCAATCTGTCTGATATGGACAGGAGACAGCCTCACTGCTCTGATgacctgcagagaggagaggagacaaacagacagaggtacAGGAGACGTTACTTGAATCACCTTCCACAACACATGAATAATGACATGTGTAAACCCACTGATCGTGGTACCCTTTGTTTGATGTGTGTCAACATGACCCCGGGACAACACACTCCTTCTAAGGCTGAGAAACAGGTGTGTGAAAATGTATGACAGATAATGACGA
>TU1519002
GACATAGACCAACAGACCCTTGGATGATAAAACAGGGCGGCCAACTGCTCAGACGCCCGGACTACAACGTCTCCTGGAATTATGACGTGGGACGATGGCCGCTGCAGGAGAGACAGTCACGTGGAGGTTGGTGGAAGATGAGCAGTCCTTCTGCTGTATGACAGCTTCCTAAAACACCCCGCGGTTTCCCATCCCACGACCCCTGGAGACCTCCCACGACCCCTGGAGACCTCCCACGACCCCTGGAGACCTCCCACGACCCCTGGAGACCTCCTCAACAAGGAGAAAAACACCATCGCTGTCTTTTACCTCTGAGACGAGGAACGGATGAAATACACAATGGATTAGATGAGGAAAACCCCTGACTCACTGGAGGACAGGGCTCTGACATGCCTTTCCATTagggacaacatcactgacaggatatagaatacaccatgGATTAGATGAGGAAACCCCTGACTCACTGGAGGACAGGGCTCTGACATGCCTTTCCATTAGGGACAACATCacctgacaggatatagaatacacatGGACAACATCacctgacaggatatagaatacacatGGATTAGATGAGGAAACCCCTGACTCACTGGAGGACAGGGCTCTGACATGCCTTTCCATTAGGGACAACATCacctgacaggatatagaatacacatGGACAACATCacctgacaggatatagaatacacatGGATTAGATGAGGAAACCCCTGACTCACTGGAGGACAGGGCTCTGACATGCCTTTCCATTagggacaacatcactgacaggatatagaatacacctggacaacatcactgacaggatatagaatacacctggacaacatcacctgacaggatatagaatacacctggacaacatcactgacaggatatagaatacacctggacaacatcactgacaggatatagaatacaccacatGGACAATGTGTCTGACACAGATTTAACTGTGTGGACAACATTACTGACAGAGATTCAAACCAGGTGGACATCAATCTGTCTGATATAGACAGGAGACAGCAGCACTGATCTGATgacctgcagagaggagaggagacaaacagacagagatttAAACCAGGTGGACATCAATCTGTCTGATATGGACAGGAGACAGCCTCACTGCTCTGATgacctgcagagaggagaggagacaaacagacagaggtacAGGAGACGTTACTTGAATCACCTTCCACAACACATGAATAATGACATGTGTAAACCCACTGATCGTGGTACCCTTTGTTTGATGTGTGTCAACATGACCCCGGGACAACACACTCCTTCTAAGGCTGAGAAACAGGTGTGTGAAAATGTATGACAGATAATGACGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036254.1 False 1222 mRNA 0.51 2 79672043 79691305
TU1519001 False 1323 lncRNA 0.39 3 79667754 79669380
TU1519000 False 656 TUCP 0.44 2 79668609 79671146
TU1519002 True 1355 lncRNA 0.48 3 79668609 79691008

Neighbor

gene id symbol gene type direction distance location
LOC110513674 LOC106593057 coding downstream 48617 79618502 ~ 79623426 (-)
LOC118938874 NA coding downstream 59172 79609180 ~ 79612871 (-)
LOC110536863 LOC105029310 coding downstream 182915 79487003 ~ 79489128 (-)
LOC118938873 LOC106590959 coding downstream 332038 79307180 ~ 79340005 (-)
LOC118938905 NA coding downstream 753910 78878740 ~ 78918133 (-)
LOC118938877 LOC106594098 coding upstream 313 79691618 ~ 79695469 (-)
LOC110510401 LOC106592932 coding upstream 219377 79910682 ~ 80084406 (-)
LOC110510850 NA coding upstream 443649 80133088 ~ 80139431 (-)
LOC110510397 LOC106596262 coding upstream 459712 80151017 ~ 80231658 (-)
LOC118938879 LOC106591974 coding upstream 460798 80152103 ~ 80153698 (-)
G1329494 NA non-coding downstream 64468 79605318 ~ 79607575 (-)
G1329484 NA non-coding downstream 67163 79604612 ~ 79604880 (-)
G1329492 NA non-coding downstream 76552 79595213 ~ 79595491 (-)
G1329490 NA non-coding downstream 81711 79588644 ~ 79590332 (-)
G1329527 NA non-coding upstream 28256 79719561 ~ 79721145 (-)
G1329495 NA non-coding upstream 30197 79721502 ~ 79751236 (-)
G1329528 NA non-coding upstream 33054 79724359 ~ 79725951 (-)
G1329534 NA non-coding upstream 55693 79746998 ~ 79749396 (-)
G1329538 NA non-coding upstream 78496 79769801 ~ 79838810 (-)
LOC118938876 NA other downstream 897 79667754 ~ 79691305 (-)
G1329481 NA other downstream 104071 79567334 ~ 79567972 (-)
G1329475 NA other downstream 128890 79542794 ~ 79543153 (-)
G1329004 NA other downstream 596507 79075290 ~ 79075536 (-)
G1328987 NA other downstream 641087 79029667 ~ 79030956 (-)
G1329577 NA other upstream 188103 79879408 ~ 79880360 (-)
LOC110517959 LOC106593769 other upstream 566242 80242189 ~ 80268839 (-)
G1328892 NA other downstream 741617 78925914 ~ 78926137 (-)
G1329514 NA non-coding upstream 4377 79675523 ~ 79679348 (-)

Expression


Co-expression Network