LOC118938877 (LOC106594098)


Basic Information

Item Value
gene id LOC118938877
gene name LOC106594098
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 79691618 ~ 79695469 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945477.1
cgagaggagacacagagaggagacagagaagggacaccgagaggagacacagagaggagacagagagagcgagagagagagagagagaaagagagagagagagagagcggagccCTTCTCATCATTCCACAAGTGACTGCTTGGTCTTGTTGGTCACAAAATAGCGCGGAAGGACTAAAAAACGCACGAGTAAAGAGGGGGGATTACGACACGGACACTAGCGGGGTCTTTGGAGACAGAAGCTGTTGCCCTTTGGGGGAGAAACATGACAGTAGTGCCCAGGGAGAACCACGATGAGACTGTGGCACTAACAGCCCTGTCCCAAGATGTGTTCGACCCGGTGGATCAGCGGACAGACCAGGAGTGCTGTGAGCGCGTGGTCATTAACATCTCCGGGCTGCTCTTTGAAACCCAGCTGAAAACGCTTGCTCACTTCCCCACCACTTTACTGGGGGATCCGAGGAAGAGAATGCGCTTCTTCGACCCTCTGAGGAACGAGTACTTCTTCGACAGGAACCGACCCAGCTTCGACGCCATCCTCTACTACTACCAGTCTGGCGGCCGCCTCCGGAGACCCGTCAACGTACCCCTGGACATATTTATGGAGGAGATCAAATTTTACCAATTGGGAGAAGATGTGATCGAGAATTTTAAGGAGGATGAGGGATTTAtaaaagaagaggagagaccgTTGCCAGATAATGAGTTTCAACGACAGGTCTGGCTTCTGTTCGAATACCCGGAGAGTTCGGGACCCGCCAGAGGGATTGctattgtctctgttctggtGATTTTAATTTCTATTGTCATCTTCTGTTTGGAGACGCTGCCTGAGTTTAGGGATGAAAAGGAGAAACATTGGGACACTGAGCTGGCGTTGAATGGAACTAACAGCTCTAAAAAGCCCAATCCATTCACAGATCCTTTCTTCATAGTGGAAACCTTGTGTATCATCTGGTTCTCCTTCGAGTTGTTCGTCAGGTTCCTAGCCTGCCCCTCCAAGCCTGCTTTTTTCAAAAACATGATGAACACCATCGACATTGTGGCCATCATGCCCTATTTCATCACCCTGGGCTTGGAGCTGGCGGAGCACCAAGGAAACGGACAGCAGGCCATGTCTCTGGCCATCCTCAGGGTCATCCGGCTGGTCAGGGTGTTCAGGATCTTCAAGCTGTCCAGACACTCCAAGGGACTTCAAATATTAGGACAAACCCTCAAAGCCAGTATGAGAGAGTTGGGGTTGCTCATTTTCTTCCTCTTCATCGGAGTCATCCTCTTCTCCAGTGCTGTCTACTTCGCCGAAACCGACGATCCAGACTCCGGTTTCAGCTCGATCCCCGACGCGTTCTGGTGGGCTGTGGTCTCCATGACTACCGTTGGCTACGGGGACATGTGCCCGGTGACCATCGGCGGAAAGATCGTGGGCTCTCTGTGCGCCATAGCCGGTGTGCTCACCATCGCGTTACCGGTCCCGGTCATCGTGTCCAACTTCAACTACTTCTATCACCGGGAGACCGAGCACGAGGAGCAGTTTCAATACACCCACGTGACGTGTGGCCAGCAGCAGCAACCGTCTTTTGGTGAATTAAAGAACAGTGACAGCCAACCATCATCGCTTTCCAAATCGGACTTAATAGCCACGGAGGACGCTGATTCTATCAAATATACCAATTGCAGCCCACACAAAGCGCACTGTAGCCCACACAAAGCGTACACGGGGAAACTCACTAATGTGTGATAATAGAGCAAACAGAAAATACCCAGCAATGGAAAAAAAAACAGGCATAGCCTTGAAGATATTCAGAGAAACCATGCGTTTCTTTCTGTGAGTAGCATACATCTCCAATTCTGCGCTCTGGCTAGAGTAAGGTTTGGCTCTCTCTTATTTCCGGCGTCTCTTAATGCTGAAGGAATTATGTTTAATAGATTATCATAACGGTGGATGAATTATAACGTGACTCGTGATCTCACCTGAAAACAGTCTTCCGTTATGCGCACAGCTCTTCTTCGCTTGTTGGTTGTAAACATCATTATGAGGCTATATTTAGCctcataaacaaataaacaacaaccatgatcaccccccccccccccccctctctattgtaGCGCTTTACTCATGCTCTCTAATTAATGTCTAATTTATTCAGCCTAATTTCgtgtctgtattttttttcttccgtTTTCTAAAAGTTTACATATTGATCTGCCTGTTTGGTGttgatatataatataataggacCAGTTTGTCTAAAATTACTTGAATGAATCTTATACCTACAGGGCATTGtaatgacttaaaaaaaaaaaacaaggtcacCCAGTGACTCTACCCACAAACCCCCTCTTTATGTACACCATATCTACGTAATGCGTTTTTCCATTAGACCGTTATTGAGAGCGTTTTACTGGGCAGCGCTGCCTGGCAGCAgaccctctatcctctctgtcaacTGTGATGAGGAATGGGCATAACAGAGGTCTATCCATCCACGCAGAGATGCCGTTGTCTTTGATAGCGGAACCACAGTAGTCTGAATGGTGTGTGTCCCCGTCTGGGAGCTGCACATCCATTCACACCTTGACAAGCCATTGAGGATACTAGACATTACGCACAGCCCGATTGCCCTCTAAAATGACCACAGGCACTATTCAAATgatttatatttatatgtacggCTCAATAACGAACAGCATCGAATCTGAATCGAATGAATCAAATATCATGCTATTGACATTGTTTACAACATTTCgttgtttttttaaaattattttttattatacaaTCTCACAATCTCACCAAAACTATATAAGTAGGTAGGTTCTATTTGCGAATAGTGCACTAGAATATCTTGAGATATTACAGATGCATGAATGAGATATTACAGATGCATGAATGAATGCGTTTAACAACTTgacgggggggtggggggtgaggggggggatGAGAAGTGCACCTTGTAGTGCTCAGACAGGCGGTCAGATGGACCCAGAGCGCCGCTCTGTGGAGAGTTCGGGAACTGCAGACGTGGTGTGGAAGCCGGTTAGTTTCTATAGCAACCTTCCAAGACCGTTCTGACAGGGGAAAGACGTTATTGTCTGACGTCAAACAGAACAGAGGAACGGAAGGATTTGACTGACGACCTGGTTGAAGGTGTTTTcattgtaccccccccccccccaatgaatGCTGCTACACAGCGCCCGACTGGAGTTACGTAGAAATATGATTCAATGATAACCGAGATGATTTTGGCAGCTATGTCCTTGTCCTGGGATGAATGGTTATATATGGTGTAGTGTAGACAGGCAGAGACCTATACTGCAGGCAGAAATGTATTGATATCAGAATCAATAGAAACCCATATTGTCATTGGTAAAAACCCTCCCCTGACTCCGAGGCCACAGCTTACTGTGCCACTTAAATCAACAGCGTCATTATATCAAGTCACCTGGCGTTCCAGGCCCGACGACATTTCAGGTCACCTTGTCTTCTGATGTcgtatgacatcacaatatcacTTCGCTACAGTGGATTACTACCTGATAACACTGCCCCCCTCCAACCCCTACatccccctcctccatcaccaTATCACCTGACTACACTGCCCCCCTCCAACCCCTACATCCCCCTTCTCCATCACCATATCACCAGACTACACTGACCCCCCTCATTCCCCCTTCTCCATCACCATGTCACCTGACACCCTCCAACCCCCTTCCCCATCACCATGTCACCTGATTCTACTGACCCCTCTCCAACCCCCTTCCCCATATCACCTGCCCCCCTCCAACCCCCTTCCCCATCACCATGTCACCTGACTCTACTGACCCCCTCCAACCCCCTTC

Function

NR:

description
shaker-related potassium channel tsha2-like

GO: NA

KEGG:

id description
K04874 KCNA1, KV1.1; potassium voltage-gated channel Shaker-related subfamily A member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945477.1 True 3852 mRNA 0.48 1 79691618 79695469

Neighbor

gene id symbol gene type direction distance location
LOC118938876 NA coding downstream 313 79667754 ~ 79691305 (-)
LOC110513674 LOC106593057 coding downstream 68192 79618502 ~ 79623426 (-)
LOC118938874 NA coding downstream 78747 79609180 ~ 79612871 (-)
LOC110536863 LOC105029310 coding downstream 202490 79487003 ~ 79489128 (-)
LOC118938873 LOC106590959 coding downstream 351613 79307180 ~ 79340005 (-)
LOC110510401 LOC106592932 coding upstream 215213 79910682 ~ 80084406 (-)
LOC110510850 NA coding upstream 439485 80133088 ~ 80139431 (-)
LOC110510397 LOC106596262 coding upstream 455548 80151017 ~ 80231658 (-)
LOC118938879 LOC106591974 coding upstream 456634 80152103 ~ 80153698 (-)
LOC118938880 NA coding upstream 527552 80223008 ~ 80224268 (-)
G1329514 NA non-coding downstream 12270 79675523 ~ 79679348 (-)
G1329494 NA non-coding downstream 84043 79605318 ~ 79607575 (-)
G1329484 NA non-coding downstream 86738 79604612 ~ 79604880 (-)
G1329527 NA non-coding upstream 24092 79719561 ~ 79721145 (-)
G1329495 NA non-coding upstream 26033 79721502 ~ 79751236 (-)
G1329528 NA non-coding upstream 28890 79724359 ~ 79725951 (-)
G1329534 NA non-coding upstream 51529 79746998 ~ 79749396 (-)
G1329538 NA non-coding upstream 74332 79769801 ~ 79838810 (-)
G1329481 NA other downstream 123646 79567334 ~ 79567972 (-)
G1329475 NA other downstream 148465 79542794 ~ 79543153 (-)
G1329004 NA other downstream 616082 79075290 ~ 79075536 (-)
G1328987 NA other downstream 660662 79029667 ~ 79030956 (-)
G1329577 NA other upstream 183939 79879408 ~ 79880360 (-)
LOC110517959 LOC106593769 other upstream 562078 80242189 ~ 80268839 (-)

Expression

LOC118938877(LOC106594098) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 10.
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LOC118938877(LOC106594098) Expression in each Bioproject

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LOC118938877(LOC106594098) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network