LOC118938880


Basic Information

Item Value
gene id LOC118938880
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 80223008 ~ 80224268 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036268.1
tcccactcctctccctccttgtTTTTCCATGACGGGCCAGATATCGAGGAggggagaacagaggacaacactGCAGGACAAGGACAAACTCATCAGTCGTCTCCAGGATTGTCTCACTATCCGCCAGACAGCAGTGTGTCTGTCACTTCTAGCCAGTCTTGTGTTCCTCTGGTGTGGAAGAGGTATTGATTTGGAATCAgtcctcccctgtcctcctccagGCTCAGGATGAGACGCAGGCTGTGTCccaacatggcaccctattctctccTACCTCGTCTCACTTCTCTCCTTGCTCTAGAtcagaacagggtgccatttggcacggAGCCTGAGCCACACAGTGATGAACAACCTCTGTGGTGATTCTCTCCTCCAATCAGCATCGGGGGGAGAGAGTTGTTGAGGTTCTGTTGTGACAACAAGGGATGGCAGGGTCGAGGTTCTGTTGTGACAACAAGGGATGGCAGGGTCGAGGTTCTGTTGTGACAACAAGGGATGGCAGGGTAGAGGTTCTGTTGTGACATCAAGGGATGGCAGGGTAGAGGTTCTGTTGTGACAACAAGGGATGGCAGGGTAGAGGTTCTGTTGTGACAACAAGGGATGGCAGGGTAGAGGTTCTGTTGTGACATCAAGGGATGGCAGGGTAGAGGTTCTGTTGTGACAACAAGGGATGGCAGGGTAGAGGTTCTGTTGTGACAACAAGGGATGGCAGGGTAGAGGTTCTGTTGTGACATCAAGGGATGGCATGGTCGAGGTTCTGTTGTGACGTGACACAACAAGGGATGGCAGGGTCGAGGTTCTGTTGTGACGTGACACAACAAGGGATGGCAGGGTAGAGGTTCTGTTGTGACAACAAGGGATGGCAGGGTCGAGGTTCTGTTGTGACATCAAGGGATGGCAGGGTAGAGGTTCTGTTGTGACATCAAGGGATGGCAGGGTAGAGGTTCTGTTGTGACAACAAGGGATGGCAGGGTAGAGGTTCTGTTGTGACAACAAGGGATGGCAGGGTAGAGGTTCTGTTGTGACAACAAGGGATGGCAGGGTAGAGGTTCTGTTGTGACAACAAGGGATGGCAGGGTAGAGGTTCTGTTGTGACATCAATGGATGGCAGGGTAGAGGTTCTGTTGTGACAACAAGGGATGGCAGGGTAGAGGTTCTGTTGTGAC
>TU1519467
AAGGGATGGCAGGGTAGAGGTTCTGTTGTGACAACAAGGGATGGCAGGGTCGAGGTTCTGTTGTGACATCAAGGGATGGCAGGGTAGAGGTTCTGTTGTGACATCAAGGGATGGCAGGGTAGAGGTTCTGTTGTGACAACAAGGGATGGCAGGGTAGAGGTTCTGTTGTGACAACAAGGGATGGCAGGGTAGAGGTTCTGTTGTGACAACAAGGGATGGCAGGGTAGAGGTTCTGTTGTGACAACAAGGGATGGCAGGGTAGAGGTTCTGTTGTGACATCAATGGATGGCAGGGTAGAGGTTCTGTTGTGACAACAAGGGATGGCAGGGTAGAGGTTCTGTTGTGACGTGACACAACAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036268.1 False 1169 mRNA 0.52 2 80223021 80224268
TU1519467 True 360 lncRNA 0.51 2 80223008 80223446

Neighbor

gene id symbol gene type direction distance location
LOC118938879 LOC106591974 coding downstream 69323 80152103 ~ 80153698 (-)
LOC110510850 NA coding downstream 83590 80133088 ~ 80139431 (-)
LOC110510401 LOC106592932 coding downstream 138615 79910682 ~ 80084406 (-)
LOC118938877 LOC106594098 coding downstream 527552 79691618 ~ 79695469 (-)
LOC118938876 NA coding downstream 531716 79667754 ~ 79691305 (-)
LOC118938881 LOC106593769 coding upstream 10862 80235130 ~ 80241078 (-)
LOC110517959 LOC106593769 coding upstream 17921 80242189 ~ 80268839 (-)
LOC110516867 LOC106594631 coding upstream 62693 80286961 ~ 80347887 (-)
LOC110516866 NA coding upstream 145041 80369309 ~ 80370531 (-)
LOC118936542 LOC106592443 coding upstream 146299 80370567 ~ 80391741 (-)
G1329780 NA non-coding downstream 403 80222165 ~ 80222618 (-)
LOC110510397 LOC106596262 non-coding downstream 9508 80151017 ~ 80231658 (-)
G1329779 NA non-coding downstream 22435 80200332 ~ 80200586 (-)
G1329777 NA non-coding downstream 48378 80174404 ~ 80174643 (-)
G1329776 NA non-coding downstream 52380 80170407 ~ 80170641 (-)
G1329783 NA non-coding upstream 8355 80232623 ~ 80233095 (-)
G1329754 NA non-coding upstream 11023 80235291 ~ 80243096 (-)
G1329784 rtcb non-coding upstream 45770 80270038 ~ 80284078 (-)
G1329577 NA other downstream 342661 79879408 ~ 79880360 (-)
G1329481 NA other downstream 655049 79567334 ~ 79567972 (-)
G1329752 NA other upstream 123993 80348261 ~ 80354313 (-)
G1329798 NA other upstream 128435 80352703 ~ 80353641 (-)

Expression


Co-expression Network