LOC118938881 (LOC106593769)


Basic Information

Item Value
gene id LOC118938881
gene name LOC106593769
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 80235130 ~ 80241078 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945504.1
CCCTCTGGAGACACCTCTACCGCAGAGACTTCAGAGACGGCCAGGACCACAGCAGAGCCAGAGACACTCAGTGGAGAGAGCTCTACAAGAAGAAGTACAAGTGGAGGAGAGAAGCAGCCAGTTACCGGCACCACATGCCCCGTTACCACCCTGTCCCCCCACCgctctaccccctccaccccctccccaaCAACCCCTTCCCCTTCTACCCGCCTGGCATCATCGGTGGGGAGTACGACCAGAGACCTGGCATCCCCGGTGGCATTCTGCCCCGCCCCCGCTACGACCCTATTGGTCCGCTCCCGGGTCACGATCCCACAGCAGGAGGGCTGATTGGACGAAGGGGGCTGAGACCTGCTGGGAACCGGCCGGCTGACATCAGAAGAGGGTTCATATGACCTCCCTGACCAGTGACCTCTAGTGGTGGTGTAGGAGTATGACCACCACACAGAGAAGCTTAAATAAAACAGAGATGTTGAAGACTGACTGATTAGCCTACCTTAAATAAGGTGCTATAGTCACAGATAAATGGCGTTGTTCGGTCTATAAACACTAACCCTCACCCAGCCTGCTTATTATCCCCTAAACCTCATCCAGGTGTTTTTTATAAACCCTATCCTTGACCCAGAATCAGCTTTTAATAGCTCatgttctcctgtgtgtgtttagtaAGTGATGAGGTCAGATCATACCGATCTGCTATCTTCATTTGATCTCTCTGTTGGAAATGTAAAGTTTTCCCGTGAGAAACCGGTCAAATTTAAGATAGTAGATCTGTAAGGGTGCCTGGGGGATTGAGGTGGCCGTTTCGATCTTCCACCATTCACTATGAAGAcattttgtacttgtttcctcgcAGACGAAAAGCTGTAAATAAAATGAGAAAATGGCAATCGACTGGTTTTTAGCTGTGGTCATATTTGAGCCCTCAGTCTGTCTCTGAAATCCAGACTGTTCAGGGACGATTCAATAGTCATGTACACTGAGctacaatataaacacaacatgtaaagtgtctcTATGTTTtatgagatgaaataaaagatcccgggAA
>TU1519418
CCTCTGGAGACACCTCTACCGCAGAGACTTCAGAGACGGCCAGGACCACAGCAGAGCCAGAGACACTCAGTGGAGAGAGCTCTACAAGAAGAAGTACAAGTGGAGGAGAGAAGCAGCCAGTTACCGGCACCACATGCCCCGTTACCACCCTGTCCCCCCACCgctctaccccctccaccccctccccaaCAACCCCTTCCCCTTCTACCCGCCTGGC

Function

NR:

description
F-box only protein 7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945504.1 False 1054 mRNA 0.49 3 80235130 80241078
TU1519418 True 217 lncRNA 0.61 3 80235966 80241077

Neighbor

gene id symbol gene type direction distance location
LOC110510397 LOC106596262 coding downstream 3472 80151017 ~ 80231658 (-)
LOC118938880 NA coding downstream 10862 80223008 ~ 80224268 (-)
LOC118938879 LOC106591974 coding downstream 81432 80152103 ~ 80153698 (-)
LOC110510850 NA coding downstream 95699 80133088 ~ 80139431 (-)
LOC110510401 LOC106592932 coding downstream 150724 79910682 ~ 80084406 (-)
LOC110517959 LOC106593769 coding upstream 1111 80242189 ~ 80268839 (-)
LOC110516867 LOC106594631 coding upstream 45883 80286961 ~ 80347887 (-)
LOC110516866 NA coding upstream 128231 80369309 ~ 80370531 (-)
LOC118936542 LOC106592443 coding upstream 129489 80370567 ~ 80391741 (-)
LOC110515349 crbl2 coding upstream 876118 81117196 ~ 81119754 (-)
G1329783 NA non-coding downstream 2035 80232623 ~ 80233095 (-)
G1329780 NA non-coding downstream 12512 80222165 ~ 80222618 (-)
G1329779 NA non-coding downstream 34544 80200332 ~ 80200586 (-)
G1329784 rtcb non-coding upstream 28960 80270038 ~ 80284078 (-)
G1329791 NA non-coding upstream 87392 80328470 ~ 80329067 (-)
G1329792 NA non-coding upstream 90884 80331962 ~ 80332326 (-)
G1329577 NA other downstream 354770 79879408 ~ 79880360 (-)
LOC118938876 NA other downstream 563984 79667754 ~ 79691305 (-)
G1329752 NA other upstream 107183 80348261 ~ 80354313 (-)
G1329798 NA other upstream 111625 80352703 ~ 80353641 (-)

Expression


Co-expression Network