LOC110516866


Basic Information

Item Value
gene id LOC110516866
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 80369309 ~ 80370531 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002472471.2
GGGGAGGAGCCTGGGAATGGGTACCACCTGGAGTGGCGAGGGCCCTTCTTCGGCCTGAGGGGGACGCTGCACTAGAACACTGTCACACTCTGACTAAGAAACCCTGAGGACATTCAGATGAACACCCAGACACTCCTGTTGCAGGGTTCTGTGATAGTGATTGTTCGGAAAGTAAAATAAGGAAATATTTATTTTCTGTAAATATTGTAAACGCACCAGACTAGTGATAATGACGAAGACAATAAAAATTACAGACGCTCGGCTCTGCGGAGCAACATAATTTAATAATTGTGAAATCCTTCCTGTTCTGGGTTTGTTTTGTTAGGACTATGCCGATTATTATTCATGTCACATTTTGCTGtaatttatttttgtttgaatcgtgtatttattttgtaaatgtatcgAGGTGCTGCTGACCTTCTATATTTTTGTACCATAATGCACTTTTagatttataaatatatatatatatatatatatatatatacatatatatatatatatatagacaagtAATTTTGTTAATTGACTTTTTGTGGTTGATTGAAATGAAGAAAACATTGTTGGTCATTCCTCCGTGTTATCTAGGCTCCTTCTCTGCACGGTTCTATAGTGATCACATGACTCGTCTGTCCGCTCTGACTGGCCCACAGACGTCTAATCTAGTTGGCTGTTGACCAGGGGCGTGTTCAATAGGCAAACTAtggaaaatgtttaaaaatgttttacaaaatagGAAATCCAAGAAATTAGCATTTCTAATTGGACTAAAGTCCAGCTAGTCCCCTCCCCGTTCCAGATGGTTCTCTTCAGTTCGATACCTAACGAACACGACCCAGGACGACCCACGCAGCTGTCctcaacccctgacccctaacctctgTACATTGTGCTTCAACTCCCCCCTCCGTCAGTTGGTCCACTGGGAACCACCTTGTCTTTCTCCTGTTAAGTTCAAAGTTCACTCGGCCTGTACATAACCTGAACACAAAGCAACAACTTCATATCGTTGTTTGGCCCTTGCACTGAGAGACTACCCTATATTGAATGGATTAAACAGTATCTCCCCTGA
>TU1519510
TGGGTACCACCTGGAGTGGCGAGGGCCCTTCTTCGGCCTGAGGGGGACGCTGCACTAGAACACTGTCACACTCTGACTAAGAAACCCTGAGGACATTCAGATGAACACCCAGACACTCCTGTTGCAGGGTTCTGTGATAGTGATTGTTCGGAAAGTAAAATAAGGAAATATTTATTTTCTGTAAATATTGTAAACGCACCAGACTAGTGATAATGACGAAGACAATAAAAATTACAGACGCTCGGCTCTGCGGAGCAACATAATTTAATAATTGTGAAATCCTTCCTGTTCTGGGTTTGTTTTGTTAGGACTATGCCGATTATTATTCATGTCACATTTTGCTGtaatttatttttgtttgaatcgtgtatttattttgtaaatgtatcgAGGTGCTGCTGACCTTCTATATTTTTGTACCATAATGCACTTTTagatttataaatatatatatatatatatatatatatatacatatatatatatatatatagacaagtAATTTTGTTAATTGACTTTTTGTGGTTGATTGAAATGAAGAAAACATTGTTGGTCATTCCTCCGTGTTATCTAGGCTCCTTCTCTGCACGGTTCTATAGTGATCACATGACTCGTCTGTCCGCTCTGACTGGCCCACAGACGTCTAATCTAGTTGGCTGTTGACCAGGGGCGTGTTCAATAGGCAAACTAtggaaaatgtttaaaaatgttttacaaaatagGAAATCCAAGAAATTAGCATTTCTAATTGGACTAAAGTCCAGCTAGTCCCCTCCCCGTTCCAGATGGTTCTCTTCAGTTCGATACCTAACGAACACGACCCAGGACGACCCACGCAGCTGTCctcaacccctgacccctaacctctgTACATTGTGCTTCAACTCCCCCCTCCGTCAGTTGGTCCACTGGGAACCACCTTGTCTTTCTCCTGTTAAGTTCAAAGTTCACTCGGCCTGTACATAACCTGAACACAAAGCAACAACTTCATATCGTTGTTTGGCCCTTGCACTGAGAGACTACCCTATATTGAATGGATTAAACAGTATCTCCCCTGA
>TU1519508
GGAGGAGCCTGGGAATGGGTACCACCTGGAGTGGCGAGGGCCCTTCTTCGGCCTGAGGGGGACGCTGCACTAGAACACTGTCACACTCTGACTAAGAAACCCTGAGGACATTCAGATGAACACCCAGACACTCCTGTTGCAGGGTTCTGTGATAGTGATTGTTCGGAAAGTAAAATAAGGAAATATTTATTTTCTGTAAATATTGTAAACGCACCAGACTAGTGATAATGACGAAGACAATAAAAATTACAGACGCTCGGCTCTGCGGAGCAACATAATTTAATAATTGTGAAATCCTTCCTGTTCTGGGTTTGTTTTGTTAGGACTATGCCGATTATTATTCATGTCACATTTTGCTGtaatttatttttgtttgaatcgtgtatttattttgtaaatgtatcgAGGTGCTGCTGACCTTCTATATTTTTGTACCA
>TU1519515
gaggaagaggcggGCGCGCTCACTGGGCTGGGCGAGGGACGGGGAGGAGCCTGGGAATGGGTACCACCTGGAGTGGCGAGGGCCCTTCTTCGGCCTGAGGGGGACGCTGCACTAGAACACTGTCACACTCTGACTAAGAAACCCTGAGGACATTCAGATGAACACCCAGACACTCCTGTTGCAGGGTTCTGTGATAGTGATTGTTCGGAAAGTAAAATAAGGAAATATTTATTTTCTGTAAATATTGTAAACGCACCAGACTAGTGATAATGACGAAGACAATAAAAATTACAGACGCTCGGCTCTGCGGAGCAACATAATTTAATAATTGTGAAATCCTTCCTGTTCTGGGTTTGTTTTGTTAGGACTATGCCGATTATTATTCATGTCACATTTTGCTGtaatttatttttgtttgaatcgtgtatttattttgtaaatgtatcgAGGTGCTGCTGACCTTCTATATTTTTGTACCA
>TU1519514
TGGGTACCACCTGGAGTGGCGAGGGCCCTTCTTCGGCCTGAGGGGGACGCTGCACTAGAACACTGTCACACTCTGACTAAGAAACCCTGAGGACATTCAGATGAACACCCAGACACTCCTGTTGCAGGGTTCTGTGATAGTGATTGTTCGGAAAGTAAAATAAGGAAATATTTATTTTCTGTAAATATTGTAAACGCACCAGACTAGTGATAATGACGAAGACAATAAAAATTACAGACGCTCGGCTCTGCGGAGCAACATAATTTAATAATTGTGAAATCCTTCCTGTTCTGGGTTTGTTTTGTTAGGACTATGCCGATTAT
>TU1519517
GGAGGAGCCTGGGAATGGGTACCACCTGGAGTGGCGAGGGCCCTTCTTCGGCCTGAGGGGGACGCTGCACTAGAACACTGTCACACTCTGACTAAGAAACCCTGAGGACATTCAGATGAACACCCAGACACTCCTGTTGCAGGGTTCTGTGATAGTGATTGTTCGGAAAGTAAAATAAGGAAATATTTATTTTCTGTAAATATTGTAAACGCACCAGACTAGTGATAATGACGAAGACAATAAAAATTACAGACGCTCGGCTCTGCGGAGCAACATAATTTAATAATTGTGAAATCCTTCCTGTTCTGGGTTTGTTTTGTTAGGACTATGCCGATTAT

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002472471.2 False 1075 mRNA 0.41 2 80369309 80370491
TU1519510 False 1058 lncRNA 0.40 2 80369309 80370474
TU1519508 False 437 lncRNA 0.41 2 80369945 80370489
TU1519515 False 479 lncRNA 0.44 2 80369945 80370531
TU1519514 False 323 lncRNA 0.43 2 80370044 80370474
TU1519517 True 338 lncRNA 0.44 2 80370044 80370489

Neighbor

gene id symbol gene type direction distance location
LOC110516867 LOC106594631 coding downstream 21422 80286961 ~ 80347887 (-)
LOC110517959 LOC106593769 coding downstream 100470 80242189 ~ 80268839 (-)
LOC118938881 LOC106593769 coding downstream 128231 80235130 ~ 80241078 (-)
LOC110510397 LOC106596262 coding downstream 137651 80151017 ~ 80231658 (-)
LOC118936542 LOC106592443 coding upstream 76 80370567 ~ 80391741 (-)
LOC110515349 crbl2 coding upstream 746705 81117196 ~ 81119754 (-)
LOC118938883 NA coding upstream 827831 81196824 ~ 81199165 (-)
LOC118938884 NA coding upstream 971423 81341914 ~ 81343353 (-)
LOC110517956 LOC106595484 coding upstream 1015539 81386030 ~ 81495207 (-)
G1329802 NA non-coding downstream 8828 80360223 ~ 80360481 (-)
G1329801 NA non-coding downstream 10603 80358380 ~ 80358706 (-)
G1329800 NA non-coding downstream 10984 80357909 ~ 80358325 (-)
G1329799 NA non-coding downstream 12049 80356974 ~ 80357260 (-)
G1329752 NA non-coding downstream 14996 80348261 ~ 80354313 (-)
G1329810 NA non-coding upstream 596 80371087 ~ 80371517 (-)
G1329813 NA non-coding upstream 10196 80380687 ~ 80381047 (-)
G1329816 NA non-coding upstream 24156 80394647 ~ 80395346 (-)
G1329824 NA non-coding upstream 39798 80410289 ~ 80411183 (-)
G1329826 NA non-coding upstream 47003 80417494 ~ 80417790 (-)
G1329798 NA other downstream 15668 80352703 ~ 80353641 (-)
G1329894 NA other upstream 181743 80552234 ~ 80552485 (-)
G1330106 lrp6 other upstream 508329 80878820 ~ 80879403 (-)
G1330142 NA other upstream 585040 80955531 ~ 80957790 (-)
G1330168 NA other upstream 634381 81004872 ~ 81006072 (-)
LOC118938880 NA coding downstream 145041 80223008 ~ 80224268 (-)
LOC118938879 LOC106591974 coding downstream 215611 80152103 ~ 80153698 (-)

Expression


Co-expression Network