LOC118936542 (LOC106592443)


Basic Information

Item Value
gene id LOC118936542
gene name LOC106592443
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 80370567 ~ 80391741 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945567.1
agagagagagagagagacatcctgCTGAAAACTTTCCCATCACTCTGACTCCAGCTGCAGCCTCAGCCGGCTCCACAGCCTCTATAACTAGAGCAGGACAGAACTACCACTGCAGACTGCAGAGCACAACTgtaggagaagaggacagaacTACTAGGAGCGGTAGAGAGGAACGGGCTCACGGAGAAATACAAATTCAGCAGGAAGCAGCAACACCTGGAGCACAACTCCAAACAACCCTCTCACTGGATCACTTTGAGCTTTGGCTTTTATTTCCAATTGAGACGATTTGGAAACAAAGAGTTGAGAAAACTAAGTTGGACTGTAAGAGGCGTGTTGGAGAtcaggagggaagagaaggacagTTTAGGACTTTGGATCTCAGTCATCTTGGGGTTTTTCCCCCGTCCTCTCTGTTTTAACAGACCATAAACCACCTGGATTGACCTTTAACCACTCTTGGgtttcttcattttttttttaccccctccAGCCTGGAACCTTGGAGAGAGTTCTCTCTCTTCTGGGGGGGTCGGAGGACGAGACTGACCAGACGTACAGCGGGACAACAGACTTCGTCCAAGATGTTGTGGTCGAGGAGAGTCGTCCAGCTGTGGTGCTTCGCTGTGTTCTTACTGTGTTCCCCTGTTCCTCACTACGGACGGCCAATCGATGGGCTCGCCAACAGGATgaAGCGCTCGGTGACCCACGCCCAGCTGATGCACGATAAGGGCCGGACGCTGCAGGATTTCAAGCGTCGCATGTGGCTCCAAGAGCTGCTGGAGGAGGTCCATACGGCTGAGATCAGGGAGCTGCCCGCCCGCCCGGTGTTCAGCAgcggactggggctgggactacCGGGTGCCGGGGTAGGGGTCAGCCTGGGATTGGGCACCACTGGGGGTACCCTGCACCCCCACCCAAAACCTCCAGGGGGCACCAAAAACCTTCCCATTAACTTCcatatggaggaggagggaaccaACCTGCCGCAGGAGACCAACAAGTCCCAAACATACAAAGACAAAGACGGGGCGCGGAGGGCCAAGGAAGGGAAGAAAAAGAAAGGGAGGaatgggaagaggagggagggggag
>TU1519501
taggagaagaggacagaacTACTAGGAGCGGTAGAGAGGAACGGGCTCACGGAGAAATACAAATTCAGCAGGAAGCAGCAACACCTGGAGCACAACTCCAAACAACCCTCTCACTGGATCACTTTGAGCTTTGGCTTTTATTTCCAATTGAGACGATTTGGAAACAAAGAGTTGAGAAAACTAAGTTGGACTGTAAGAGGCGTGTTGGAGAtcaggagggaagagaaggacagTTTAGGACTTTGGATCTCAGTCATCTTGGGGTTTTTCCCCCGTCCTCTCTGTTTTAACAGACCATAAACCACCTGGATTGACCTTTAACCACTCTTGGgtttcttcattttttttttaccccctccAGCCTGGAACCTTGGAGAGAGTTCTCTCTCTTCTGGGGGGGTCGGAGGACGAGACTGACCAGACGTACAGCGGGACAACAGACTTCGTCCAAGATGTTGTGGTCGAGGAGAGTCGTCCAGCTGTGGTGCTTCGCTGTGTTCTTACTGTGTTCCCCTGTTCCTCACTACGGACGGCCAATCGATGGGCTCGCCAACAGGATgaAGCGCTCGGTGACCCACGCCCAGCTGATGCACGATAAGGGCCGGACGCTGCAGGATTTCAAGCGTCGCATGTGGCTCCAAGAGCTGCTGGAGGAGGTCCATACGGCTGAGATCAGGGAGCTGCCCGCCCGCCCGGTGTTCAGCAgcggactggggctgggactacCGGGTGCCGGGGTAGGGGTCAGCCTGGGATTGGGCACCACTGGGGGTACCCTGCACCCCCACCCAAAACCTCCAGGGGGCACCAAAAACCTTCCCATTAACTTCcatatggaggaggagggaaccaACCTGCCGCAGGAGACCAACAAGTCCCAAACATACAAAGACAAAGACGGGGCGCGGAGGGCCAAGGAAGGGAAGAAAAAGAAAGGGAGGaatgggaagaggagggaggggg
>TU1519502
CGGCTCCACAGCCTCTATAACTAGAGCAGGACAGAACTACCACTGCAGACTGCAGAGCACAACTgtaggagaagaggacagaacTACTAGGAGCGGTAGAGAGGAACGGGCTCACGGAGAAATACAAATTCAGCAGGAAGCAGCAACACCTGGAGCACAACTCCAAACAACCCTCTCACTGGATCACTTTGAGCTTTGGCTTTTATTTCCAATTGAGACGATTTGGAAACAAAGAGTTGAGAAAACTAAGTTGGACTGTAAGAGGCGTGTTGGAGAtcaggagggaagagaaggacagTTTAGGACTTTGGATCTCAGTCATCTTGGGGTTTTTCCCCCGTCCTCTCTGTTTTAACAGACCATAAACCACCTGGATTGACCTTTAACCACTCTTGGgtttcttcattttttttttaccccctccAGCCTGGAACCTTGGAGAGAGTTCTCTCTCTTCTGGGGGGGTCGGAGGACGAGACTGACCAGACGTACAGCGGGACAACAGACTTCGTCCAAGATGTTGTGGTCGAGGAGAGTCGTCCAGCTGTGGTGCTTCGCTGTGTTCTTACTGTGTTCCCCTGTTCCTCACTACGGACGGCCAATCGATGGGCTCGCCAACAGGATgaAGCGCTCGGTGACCCACGCCCAGCTGATGCACGATAAGGGCCGGACGCTGCAGGATTTCAAGCGTCGCATGTGGCTCCAAGAGCTGCTGGAGGAGGTCCATACGGCTGAGATCAGGGAGCTGCCCGCCCGCCCGGTGTTCAGCAgcggactggggctgggactacCGGGTGCCGGGGTAGGGGTCAGCCTGGGATTGGGCACCACTGGGGGTACCCTGCACC
>TU1519503
taggagaagaggacagaacTACTAGGAGCGGTAGAGAGGAACGGGCTCACGGAGAAATACAAATTCAGCAGGAAGCAGCAACACCTGGAGCACAACTCCAAACAACCCTCTCACTGGATCACTTTGAGCTTTGGCTTTTATTTCCAATTGAGACGATTTGGAAACAAAGAGTTGAGAAAACTAAGTTGGACTGTAAGAGGCGTGTTGGAGAtcaggagggaagagaaggacagTTTAGGACTTTGGATCTCAGTCATCTTGGGGTTTTTCCCCCGTCCTCTCTGTTTTAACAGACCATAAACCACCTGGATTGACCTTTAACCACTCTTGGgtttcttcattttttttttaccccctccAGCCTGGAACCTTGGAGAGAGTTCTCTCTCTTCTGGGGGGGTCGGAGGACGAGACTGACCAGACGTACAGCGGGACAACAGACTTCGTCCAAGATGTTGTGGTCGAGGAGAGTCGTCCAGCTGTGGTGCTTCGCTGTGTTCTTACTGTGTTCCCCTGTTCCTCACTACGGACGGCCAATCGATGGGCTCGCCAACAGGATgaAGCGCTCGGTGACCCACGCCCAGCTGATGCACGATAAGGGCCGGACGCTGCAGGATTTCAAGCGTCGCATGTGGCTCCAAGAGCTGCTGGAGGAGGTCCATACGGCTGAGATCAGGGAGCTGCCCGCCCGCCCGGTGTTCAGCAgcggactggggctgggactacCGGGTGCCGGGGTAGGGGTCAGCCTGGGATTGGGCACCACTGGGGGTACCCTGCACC

Function

NR:

description
parathyroid hormone-related protein-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945567.1 False 1097 mRNA 0.54 3 80370567 80391741
TU1519501 False 963 TUCP 0.55 3 80370569 80391609
TU1519502 False 848 TUCP 0.54 3 80370749 80391674
TU1519503 True 783 TUCP 0.54 3 80370749 80391609

Neighbor

gene id symbol gene type direction distance location
LOC110516866 NA coding downstream 76 80369309 ~ 80370531 (-)
LOC110516867 LOC106594631 coding downstream 22680 80286961 ~ 80347887 (-)
LOC110517959 LOC106593769 coding downstream 101728 80242189 ~ 80268839 (-)
LOC118938881 LOC106593769 coding downstream 129489 80235130 ~ 80241078 (-)
LOC118938880 NA coding downstream 146299 80223008 ~ 80224268 (-)
LOC110515349 crbl2 coding upstream 725455 81117196 ~ 81119754 (-)
LOC118938883 NA coding upstream 806581 81196824 ~ 81199165 (-)
LOC118938884 NA coding upstream 950173 81341914 ~ 81343353 (-)
LOC110517956 LOC106595484 coding upstream 994289 81386030 ~ 81495207 (-)
LOC110511600 gns coding upstream 1142381 81534122 ~ 81554017 (-)
G1329802 NA non-coding downstream 10086 80360223 ~ 80360481 (-)
G1329801 NA non-coding downstream 11861 80358380 ~ 80358706 (-)
G1329800 NA non-coding downstream 12242 80357909 ~ 80358325 (-)
G1329799 NA non-coding downstream 13307 80356974 ~ 80357260 (-)
G1329816 NA non-coding upstream 2906 80394647 ~ 80395346 (-)
G1329824 NA non-coding upstream 18548 80410289 ~ 80411183 (-)
G1329826 NA non-coding upstream 25753 80417494 ~ 80417790 (-)
G1329828 NA non-coding upstream 32661 80424402 ~ 80424639 (-)
G1329854 NA non-coding upstream 74376 80466117 ~ 80469202 (-)
G1329752 NA other downstream 16254 80348261 ~ 80354313 (-)
G1329798 NA other downstream 16926 80352703 ~ 80353641 (-)
LOC110510397 LOC106596262 other downstream 139248 80151017 ~ 80231658 (-)
G1329894 NA other upstream 160493 80552234 ~ 80552485 (-)
G1330106 lrp6 other upstream 487079 80878820 ~ 80879403 (-)
G1330142 NA other upstream 563790 80955531 ~ 80957790 (-)
G1330168 NA other upstream 613131 81004872 ~ 81006072 (-)

Expression


Co-expression Network