XLOC_031665 (GANAB)


Basic Information

Item Value
gene id XLOC_031665
gene name GANAB
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 69140656 ~ 69180601 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061321
GATGCGCGCAGGGGCAAAGTTCACATGGAGGCAAGATGGCGGCTTCCTGTGACAGCTTTGTTTTGCTGCTGTTTCTGCTGTTTGTGAGCGCTCAGGCTGTGGACCGCAGTAACTTCAAAACATGCGACCAGAGCTCATTTTGCAAgcGCCAGAGGGAGCTGAAGCCAGGTCAGTCCCCGTACAGAGCTCTGCTGGACACACTGGAGCTGAGCGACTCCAGACTCACACTGCAGCTCATCAATGACAACAACAAGGTCCGCTTGTTGCTGGAGCTGTACAGACTGCAGGGGAACATGACACGGGTGAAGATTAATGAACTCAAACCAATCAAGCCTCGTTATGAGGTGCCAGATGTGCTCATCTCTGATCCCATTACTGAAGCGCTGTCCGTGGTGTCTCAGGATGACAACAGTCTTGTTTTGTCTCTGGGTGGAAACGAGCAGCGGCTCATCGTCAGCGCTCAGCCATTTCGCCTGGACATCATCGAGGGCCCTCAGGTGCTCATGTCCCTCAACTCCAGGGGCCTGCTGGCCTTCGAGCACCTGCGGGTGCGCAAGGACACCAACAGCGAGTCTGAGGAAACCACAGGACAGCAGAAAGAGGAGCAACAAACtagtgagGATGGACAAAtaaaagaagaagaggaggaagagaaaCCGGGCATGTGGGAGGAAACCTTCAAATCTCATAGTGATTCAAAACCCAATGGTCCGTCATCTATTAGTTTAGATTTTTCTCTGCCGGGTGTGGAGCATGTGTACGGCATTCCCGAACACGCAGACACACTCAGACTGAAGAGCACAGAAAATTCAGACCCTTATCGGCTGTACAACCTGGATGTCTTTCAGTATGAGCTGCACAACCCAATGGCTCTTTACGGGGCCGTTCCTGTCCTCATTTCTCACAGCACTGAGCGCACCATGGGCATCTTCTGGCTCAACGCCGCAGAAACATGGGTGGATATCAGCTCAAACTCTCCAGACACGGTGTCTAGTGACGCTCCTCAGACGAATGTCCGCTGGGTTTCTGAGAGCGGTATTATTGATGTCTTTATCATGCTGGGACCAAAACCTGCAGATGTCTTCACTCAGTACGCCTCACTTACAGGCACGCAGTCTTTTCCTCCTCTGTCGGCGCTGGCGTATCATCAGTGCCGCTGGAACTATAATGATCAGGAGGACGTAAAGGCTGTGGATCAGGGCTTCGATGAGCACGACATCCCGTATGACTTCATCTGGCTGGACATTGAACATGCGGATGGAAAACGCTACTTCACCTGGGACCCCATCAAATTCCCTACACCTAAAGACATGCTGAAGGGGCTGATGGACAAGAGACgcaagCTAGTGGCCATTGTGGATCCTCACATTAGGGTGGACAGCGGCTACAGGATTCACAACGAGATCCGCTCCAAGAACTTTTATGTCAAGAACAAAGATGGAGGAGACTATGAGGGCTGGTGTTGGCCAGGTAATTCAGGCTATCCTGACTTCACTAACCCAGAGATGAGAGCGTGGTGGGCCAGCATGTTTGCCTATGACCAGTATGAGgGCTCTATGGAGAATCAGTACATCTGGAATGACATGAACGAGCCGTCTGTGTTTAATGGGCCTGAGGTGACCATGCACAAAGATGCGGTTCACGGTGTCTGGGAGCACAGAGACGTGCACAACCTTTATGGCCTCTATGTGCAAAAGGCAACGTCTGAAGGCCTGATTCAGCGTTCTGGAGGAGTGGAGAGACCTTTCGTTCTGACCAGAGCATTTTTTGCTGGATCTCAGCGTTACGGTGCGGTGTGGACAGGAGATAATGCTGCTGAATGGGGTCATCTGAAGATCTCCATCCCCATGTGCTTGAGTCTGGGCTTAGTGGGCATCTCTTTCTGTGGAGCTGATGTTGGCGGTTTCTTTAAACATCCCAGTGCTGAGCTGTTGGTGCGATGGTATCAGGCTGGAGCTTATCAGCCATTTTTCCGTGCACACGCTCACATAGACACACCGCGCAGGGAGCCCTGGCTGTTCGGCCCAGAAAACACTGCCCTCATCCGGGAGGCGGTGCGCCAGCGATATGCCCTCCTGCCAAACTGGTACCAGCTATTCTACAATGCACACAACACTGGACAGCCAGTTATGAGACCTCTGTGGGTAGAATATCCTGCCGAGGTCACCACTTTCTCAATTGAGGATGAGTACTTGATTGGGAAGGATTTGCTGGTGCACCCGGTCACTGATGAGGGCGCCACTGGTGTTACTGCATATCTGCCTGGGAAAGGCGAGGTCTGGTATGACGTTCATTCTCTCCAGAAGCATGATGGGGATCAGAGTCTCTACATTCCTGTCACCATGAGCTCCATCCCAGTCTTCCAGCGTGGAGGATCCATCATCTGCAGGAAAGAGCGCGTCAGGAGGTCTTCGTCCTGTATGGAGAACGATCCCTACACTCTCTATGTTGCTCTTAATTCTCAGGGTTTTGCTGAAGGAGAGCTGTACATCGATGACTTCCACACCTTTAACTATCAGAAATCCAAGCAGTTTATCCACAGACGTCTGTCCTTCTCTAACAACAGCCTGACCTCCAGAAATCTGGCTCCTGATGCTCAGTTTTCCACCGAGTCTTGGATAGAGAGGATTGTGGTCATTGGAGGCAGTCGACCGTCCTCAGTTTCACTGATCAATGCAGatGGTGTGGAGTCGGCTTTAGAGTTTGAGTTCTCCTCTAATCCTGCAGTGTTGACTGTCCGTAAGCCATCGGTCAGCGCAGCGGCAGACTGGACTGTTGTTTTGCGGTAAAACACAATCTTAACATGCAGCAGGAGGAAATGCAGCACTTAAAGAACACACAAACAGAGAACGGGACCAGATCTGATGTGTTTAAGATGATGAGATCAGTATGAATTCAGACTAATCGAGTTTGATTGAACAAACGAGACCAGAAAGGGGTTTCAATTAGCAGTTTTATAATTGGGTTGAAGgttaaaatggaaataataataatatagaggtTATTGATTAGAGCATTTGAGTTAGGTTTTTTTGTtagtattttgctttttttttttttttctcggctCTGATTATTttggcaaaacaaacaaaaaaaaatcatttgtttttccttttttcactTGGCAAGTGTTTAAATTGGGGCAAAATTATGAATAGTTCAAAACTTCCACAAGACGTCCAGGCCTTATTTATTGAGGTCACACTAATGAACAGTTTCcttattttgttatttactgTTGTGATTTGCTTTATGGGATTTTGCTgagtcgacttttgatgttaaaaaaatcaaCTCTGTGtgaaaaataaaagacttttattgacattttagtgttTTGAAACCATATATTGCAtaagatatacatatatatatatatatataatgaagagCTTAGATGCTAAAACCTCTatatgccatctgaaatttttctctaaaatgagcattttatcgGCCTTCTATGTGTATGTTCAGTattatcacttttatggcaaagaataagtccttttcctggtctttaaagtaaaatatcttAACAgaaaacaaagg
>TCONS_00061322
TTTGCTGCTGTTTCTGCTGTTTGTGAGCGCTCAGGCTGTGGACCGCAGTAACTTCAAAACATGCGACCAGAGCTCATTTTGCAAgcGCCAGAGGGAGCTGAAGCCAGGTCAGTCCCCGTACAGAGCTCTGCTGGACACACTGGAGCTGAGCGACTCCAGACTCACACTGCAGCTCATCAATGACAACAACAAGGTCCGCTTGTTGCTGGAGCTGTACAGACTGCAGGGGAACATGACACGGGTGAAGATTAATGAACTCAAACCAATCAAGCCTCGTTATGAGGTGCCAGATGTGCTCATCTCTGATCCCATTACTGAAGCGCTGTCCGTGGTGTCTCAGGATGACAACAGTCTTGTTTTGTCTCTGGGTGGAAACGAGCAGCGGCTCATCGTCAGCGCTCAGCCATTTCGCCTGGACATCATCGAGGGCCCTCAGGTGCTCATGTCCCTCAACTCCAGGGGCCTGCTGGCCTTCGAGCACCTGCGGGTGCGCAAGGACACTATCTCACATAAAATAAGTAGCACAGTTGGTAGCATGTGGGACTCGATCAAGAGCGTTTTCTCTAG
>TCONS_00061323
CAAAGTTCACATGGAGGCAAGATGGCGGCTTCCTGTGACAGCTTTGTTTTGCTGCTGTTTCTGCTGTTTGTGAGCGCTCAGGCTGTGGACCGCAGTAACTTCAAAACATGCGACCAGAGCTCATTTTGCAAgcGCCAGAGGGAGCTGAAGCCAGGTCAGTCCCCGTACAGAGCTCTGCTGGACACACTGGAGCTGAGCGACTCCAGACTCACACTGCAGCTCATCAATGACAACAACAAGGTCCGCTTGTTGCTGGAGCTGTACAGACTGCAGGGGAACATGACACGGGTGAAGATTAATGAACTCAAACCAATCAAGCCTCGTTATGAGGTGCCAGATGTGCTCATCTCTGATCCCATTACTGAAGCGCTGTCCGTGGTGTCTCAGGATGACAACAGTCTTGTTTTGTCTCTGGGTGGAAACGAGCAGCGGCTCATCGTCAGCGCTCAGCCATTTCGCCTGGACATCATCGAGGGCCCTCAGGTGCTCATGTCCCTCAACTCCAGGGGCCTGCTGGCCTTCGAGCACCTGCGGGTGCGCAAGGACAC

Function

symbol description
ganab Enables glucan 1,3-alpha-glucosidase activity. Involved in N-glycan processing. Located in intracellular membrane-bounded organelle. Part of glucosidase II complex. Implicated in polycystic kidney disease; polycystic kidney disease 3; and polycystic liver disease.

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0016798 hydrolase activity, acting on glycosyl bonds molecular_function
GO:0030246 carbohydrate binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko00510 N-Glycan biosynthesis
ko04141 Protein processing in endoplasmic reticulum

ZFIN:

id description
ZDB-GENE-110930-9 Predicted to enable glucan 1,3-alpha-glucosidase activity. Predicted to be involved in N-glycan processing. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be part of glucosidase II complex. Human ortholog(s) of this gene implicated in polycystic kidney disease; polycystic kidney disease 3; and polycystic liver disease. Orthologous to human GANAB (glucosidase II alpha subunit).

Ensembl:

ensembl_id ENSDARG00000076888

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061321 False 3552 mRNA 0.47 24 69140656 69180601
TCONS_00061322 False 567 mRNA 0.53 5 69169574 69180227
TCONS_00061323 True 548 mRNA 0.55 5 69172176 69180587

Neighbor

gene id symbol gene type direction distance location
XLOC_031663 ank1a coding downstream 99554 68899473 ~ 69041102 (-)
XLOC_031664 dre-mir-2188 coding downstream 118694 69021859 ~ 69021962 (-)
XLOC_031662 NA coding downstream 247645 68890477 ~ 68893011 (-)
XLOC_031661 sftpbb coding downstream 264445 68845048 ~ 68876211 (-)
XLOC_031660 C5H2orf68 coding downstream 314479 68817034 ~ 68826177 (-)
XLOC_031666 mat2ab coding upstream 18597 69199198 ~ 69212184 (-)
XLOC_031667 inpp5jb coding upstream 51629 69232230 ~ 69271450 (-)
XLOC_031668 smtnb coding upstream 109389 69289990 ~ 69316206 (-)
XLOC_031669 FQ311924.2 coding upstream 139377 69319978 ~ 69351280 (-)
XLOC_031670 FQ311924.1 coding upstream 236861 69417462 ~ 69425224 (-)
XLOC_031659 NA non-coding downstream 324546 68813923 ~ 68816110 (-)
XLOC_031656 NA non-coding downstream 472114 68622098 ~ 68668542 (-)
XLOC_031655 LO017735.1 non-coding downstream 522567 68617958 ~ 68618089 (-)
XLOC_031681 CT978957.3 non-coding upstream 475793 69656394 ~ 69656508 (-)
XLOC_031682 NA non-coding upstream 497472 69678073 ~ 69696089 (-)
XLOC_031686 NA non-coding upstream 668399 69849000 ~ 69855751 (-)
XLOC_031689 NA non-coding upstream 780125 69960726 ~ 69962413 (-)

Expression


Co-expression Network