Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC118936541 |
| gene name | lrp6 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048579.1 |
| NCBI id | CM023233.2 |
| chromosome length | 81569517 |
| location | 80873145 ~ 80954097 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| lrp6 | Predicted to enable Wnt-activated receptor activity and Wnt-protein binding activity. Acts upstream of or within with a positive effect on Wnt signaling pathway involved in dorsal/ventral axis specification and canonical Wnt signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in posterior lateral line primordium. Human ortholog(s) of this gene implicated in tooth agenesis. Orthologous to human LRP6 (LDL receptor related protein 6). |
| id | name | namespace |
|---|---|---|
| GO:0016021 | integral component of membrane | cellular_component |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036945514.1 | False | 6971 | mRNA | 0.55 | 24 | 80873145 | 80954097 |
| XM_036945515.1 | False | 5506 | mRNA | 0.55 | 18 | 80908663 | 80954097 |
| TU1519895 | True | 282 | lncRNA | 0.45 | 2 | 80908771 | 80909109 |
80,830,000
80,840,000
80,850,000
80,860,000
80,870,000
80,880,000
80,890,000
80,900,000
80,910,000
80,910,000
80,920,000
80,930,000
80,940,000
80,950,000
80,960,000
80,970,000
80,980,000
80,990,000
NC_048579.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118938882 | cunh11orf98 | coding | upstream | 31869 | 80836729 ~ 80841276 (+) |
| LOC118938906 | NA | coding | upstream | 141810 | 80730412 ~ 80731335 (+) |
| LOC110516869 | LOC106593275 | coding | upstream | 518839 | 80348246 ~ 80354306 (+) |
| LOC118938966 | NA | coding | upstream | 523896 | 80349115 ~ 80349249 (+) |
| LOC110517212 | rtcb | coding | upstream | 589051 | 80268944 ~ 80284094 (+) |
| tbk1 | tbk1 | coding | downstream | 16405 | 80970502 ~ 81033922 (+) |
| LOC110515350 | gpr19 | coding | downstream | 124516 | 81078613 ~ 81101324 (+) |
| LOC110514543 | dusp16 | coding | downstream | 176166 | 81130263 ~ 81196539 (+) |
| LOC110518769 | LOC106594571 | coding | downstream | 251031 | 81205128 ~ 81359294 (+) |
| LOC118938885 | LOC106591857 | coding | downstream | 549419 | 81503516 ~ 81526001 (+) |
| G1330026 | NA | non-coding | upstream | 3778 | 80849343 ~ 80869367 (+) |
| G1330030 | NA | non-coding | upstream | 10253 | 80859372 ~ 80862892 (+) |
| G1330029 | NA | non-coding | upstream | 20229 | 80852528 ~ 80852916 (+) |
| G1330001 | NA | non-coding | upstream | 48756 | 80823932 ~ 80824389 (+) |
| G1329986 | NA | non-coding | upstream | 70115 | 80801944 ~ 80803030 (+) |
| LOC110512607 | NA | non-coding | downstream | 4326 | 80953309 ~ 80959340 (+) |
| G1330077 | NA | non-coding | downstream | 19655 | 80973752 ~ 80974428 (+) |
| G1330090 | NA | non-coding | downstream | 67801 | 81021898 ~ 81022209 (+) |
| G1330092 | NA | non-coding | downstream | 69948 | 81024045 ~ 81024612 (+) |
| G1330093 | NA | non-coding | downstream | 74529 | 81028626 ~ 81032689 (+) |
| G1329865 | NA | other | upstream | 382373 | 80489848 ~ 80490772 (+) |
| G1329827 | NA | other | upstream | 453886 | 80418464 ~ 80419259 (+) |
| G1329273 | NA | other | upstream | 887194 | 79985593 ~ 79985951 (+) |
| G1329160 | NA | other | upstream | 1205490 | 79664957 ~ 79667655 (+) |
| G1330089 | NA | other | downstream | 58432 | 81012529 ~ 81013102 (+) |
| G1330269 | NA | other | downstream | 330304 | 81284401 ~ 81290964 (+) |
| G1330057 | NA | non-coding | upstream | 17490 | 80890961 ~ 80891281 (+) |
| G1330053 | NA | non-coding | upstream | 28246 | 80880157 ~ 80880525 (+) |
| G1330062 | NA | non-coding | downstream | 135 | 80909244 ~ 80909938 (+) |
| G1330063 | NA | non-coding | downstream | 9044 | 80918153 ~ 80918646 (+) |
| G1330064 | NA | non-coding | downstream | 9609 | 80918718 ~ 80919551 (+) |
| G1330066 | NA | non-coding | downstream | 15559 | 80924668 ~ 80925292 (+) |
| G1330067 | NA | non-coding | downstream | 23606 | 80932715 ~ 80933673 (+) |
