G1248674


Basic Information

Item Value
gene id G1248674
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 302267 ~ 305285 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1426036
agcatggtcagagttagtgtctcagttcagttacagcatggtcagagttagtgactcagttcagtcacagcatggtccagttatagcatggtccagttagtgactcagttcagtcaaagcatggtcagagttagtgactcatTTCAGTTACAGCATCATCATCATTAGTGACTCAATTCAGTTACAGCATGGCCAaggtagtgactcagttcagtcacagcatggtcagagttagtgactcagttcagtcatagcatggtcagagttagtgactcagaTCAGTTAtagcatggtcagagttagtgactcagttcagttacagcatggtcagagctagtgactcagttcagttacagcatggtccagttagtgactcagttcagtcacagtcaaagcatggtccagttagtgactcagttcagtcacagtcaaagcatggtccagttagtgactcaTCACAGTCAAAGCATGGTCCatttagtga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1426036 True 484 lncRNA 0.44 3 302267 305285
Loading

Neighbor

gene id symbol gene type direction distance location
smpx smpx coding downstream 55109 211098 ~ 247177 (-)
LOC118938957 NA coding downstream 228275 73839 ~ 73992 (-)
LOC118938949 NA coding downstream 269833 16053 ~ 32434 (-)
vipr1b vipr1 coding upstream 267513 572798 ~ 805393 (-)
sec22c sec22c coding upstream 521313 826598 ~ 843603 (-)
LOC118938951 NA coding upstream 525787 830248 ~ 832327 (-)
klhl40b LOC106590700 coding upstream 719289 1024574 ~ 1040867 (-)
hhatlb hhatl coding upstream 749678 1054963 ~ 1101022 (-)
G1248264 NA non-coding downstream 27045 274973 ~ 275222 (-)
G1248256 NA non-coding downstream 32540 269256 ~ 269727 (-)
G1248164 klhl34 non-coding downstream 120944 177823 ~ 181323 (-)
G1248162 NA non-coding downstream 141685 158136 ~ 160582 (-)
G1248161 NA non-coding downstream 144247 157616 ~ 158020 (-)
G1248676 NA non-coding upstream 2619 307904 ~ 315614 (-)
G1248682 mbtps2 non-coding upstream 16354 321639 ~ 330649 (-)
G1248703 NA non-coding upstream 49276 354561 ~ 355241 (-)
G1248843 NA non-coding upstream 297073 602358 ~ 634603 (-)
G1248844 NA non-coding upstream 304225 609510 ~ 617569 (-)
G1249325 NA other upstream 1097911 1403196 ~ 1405878 (-)
G1249326 LOC106581475 other upstream 1103904 1409189 ~ 1411097 (-)
G1249729 NA other upstream 1501699 1806984 ~ 1807621 (-)
G1250031 LOC107579696 other upstream 2042306 2347591 ~ 2348068 (-)
G1250592 NA other upstream 2681829 2987114 ~ 2987410 (-)

Expression

G1248674 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
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G1248674 Expression in each Bioproject

Bar chart with 12 bars.
G1248674 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 70.
End of interactive chart.

Co-expression Network