XLOC_003167 (si:dkey-33m11.8)


Basic Information

Item Value
gene id XLOC_003167
gene name si:dkey-33m11.8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 3575963 ~ 3584553 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006249
GTGGTTACACTATAAAACCAAAGGTATTGTTCGCAGGTTAGCTAGTACTCAAGGAAGCTAGCAGGATTTAGCTGCTCAGGATTTAGGTTTCCATGCTCAGGACCCCTCAAACATGAAGAAATGCCTTGAATACACCTTGCTCCTTATCGTCTCAATGCTTCAAGGCTCGAAGCAGCAGAGGATCATTGGAGGACAGGAGGTTCAGCCATACTCCATAAAGTACCAGGCCTCTGTCCAGTACAACAACTACCATTACTGCGGAGGAACACTCATACACCCGCAGTGGGTGGTCAGTGCTGCCCACTGCTGGAGACCGAGCTATTTAATCAAAGTGGTGTTAAGTGAACATGACCTCTCTAAAATCGAGGGCTTTGAGCGGGTGTTCAATGTGTCCAAGGCCCTGGTGCATTACATGTACAATTACAGGACGTTTGATAGTGACATCATGCTTCTGAAATTGGAGAAGCCAGCAGAGCTAAGTGCCACCATCCAGCCAGCTGTGCTGCCGGTCTCCGTCCCGGCTCTACAGGGCGGCACAGTGTGCATCGTGAGCGGCTGGGGCGTCACTCAGGTTTACAGCTATTACCTGTCGCCCGTCCTGCGAGCCGTGGATGTCCAGATCATCCCGCAGTGCCAGTACTATTACTACTACAGGATCACAGACAACATGGTGTGCGCCGGCTCCCCGCTGGGCGGAAAAGACTCCTGCCAGGGCGATTCTGGCGGGCCGCTCATCTGTAATGGTTATTTTGAGGGCATCGTGTCCTGGGGCATCAGCTGTGCCAACGCTTATTTTCCTGGGGTCTACACCAAAGTCCGCAACTACATTCCCTGGATGACCTGGATAATCGACAACGACACCAGCTAGAATGTTGTTTCCAATGGTTGTTGAAGTGCGGTACTGTTAAAAATACCACCAGATGGTTGTAAGGATACTCAATAAGATGGTCAAAGTCTGTTAGATAAAATAGGAGAATcaaatatacacagttgaagtcagaattattaacgcTACTGTGAATTTGtttgtctttttcaaatatttcttaaattgtgtttaacagtcttatttgttttatttcggctagaataaaagcagtttgtatttatttaacaaccatttaaaggtcaaaaagTCATCattacaaagataaaagaaattattagaaatgagttattaaaactattatgtttagaaaagtgttgaaaaaaagtcttctctattaaacagaaattggggaataaaatacggctaatagttctgaccaactatgtctatatatatatatatatatatatatatatatataattttcagtACAAGCCTACAATAAGTTCTCATTTATAAACATTAGGAATGACATATTTTGATGTATTTTGTAAGCGTTCTGTCATTGACTTGTTTTCAACATGTCTGAaaatctttcttctgttgaacagtttGAAGAATCTCAGAAATCGGTAGCCATTGTCTTATAGTATCTTTCCTATGAATCCCATTCTTtcctatgaatgtcaatggctacccctttccaacattcttctaaataacatacatgtttttttttttttacagaaaacaagaAACTCAATCTGGCTTAAATGTTTAAGGAAATGATGAATAAATTATCAATTTCAAG
>TCONS_00006250
ATGAAGAAATGCCTTGAATACACCTTGCTCCTTATCGTCTCAATGCTTCAAGGCTCGAAGCAGCAGAGGATCATTGGAGGACAGGAGGTTCAGCCATACTCCATAAAGTACCAGGCCTCTGTCCAGTACAACAACTACCATTACTGCGGAGGAACACTCATACACCCGCAGTGGGTGGTCAGTGCTGCCCACTGCTGGAGACCGAGCTATTTAATCAAAGTGGTGTTAAGTGAACATGACCTCTCTAAAATCGAGGGCTTTGAGCGGGTGTTCAATGTGTCCAAGGCCCTGGTGCATTACATGTACAATTACAGGACGTTTGATAGTGACATCATGCTTCTGAAATTGGAGAAGCCAGCAGAGCTAAGTGCCACCATCCAGCCAGCTGTGCTGCCGGTCTCCGTCCCGGCTCTACAGGGCGGCACAGTGTGCATCGTGAGCGGCTGGGGCGTCACTCAGGTTTACAGCTATTACCTGTCGCCCGTCCTGCGAGCCGTGGATGTCCAGATCATCCCGCAGTGCCAGTACTATTACTACTACAGGATCACAGACAACATGGTGTGCGCCGGCTCCCCGCTGGGCGGAAAAGACTCCTGCCAGGGCGATTCTGGCGGGCCGCTCATCTGTAATGGTTATTTTGAGGGCATCGTGTCCTGGGGCATCAGCTGTGCCAACGCTTATTTTCCTGGGGTCTACACCAAAGTCCGCAACTACATTCCCTGGATGACCTGGATAATCGACAACGACACCAGCTAG

Function

symbol description
si:dkey-33m11.8 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis.

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141215-49 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis.

Ensembl:

ensembl_id ENSDARG00000055014

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006249 False 1640 mRNA 0.41 6 3575963 3584553
TCONS_00006250 True 756 mRNA 0.53 5 3578543 3583781

Neighbor

gene id symbol gene type direction distance location
XLOC_003166 CR558302.1 coding upstream 9713 3538988 ~ 3566250 (+)
XLOC_003165 pusl1 coding upstream 50704 3499111 ~ 3525259 (+)
XLOC_003164 NA coding upstream 242249 3331113 ~ 3333714 (+)
XLOC_003163 sarnp coding upstream 257216 3308656 ~ 3318747 (+)
XLOC_003162 mmp19 coding upstream 284192 3279039 ~ 3291771 (+)
XLOC_003168 cdab coding downstream 1381 3585934 ~ 3593118 (+)
XLOC_003169 NA coding downstream 31197 3615750 ~ 3735803 (+)
XLOC_003170 NA coding downstream 186713 3771266 ~ 3783125 (+)
XLOC_003171 gnl3 coding downstream 374942 3959495 ~ 3971035 (+)
XLOC_003172 spcs1 coding downstream 404850 3989403 ~ 3993738 (+)
XLOC_003250 BX324177.11 misc downstream 7761250 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 7788333 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 7801809 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 7833480 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 7844840 11429393 ~ 11429689 (+)
XLOC_003160 NA non-coding upstream 369265 3203487 ~ 3206698 (+)
XLOC_003159 dre-mir-724 non-coding upstream 399193 3176686 ~ 3176770 (+)
XLOC_003156 CT583672.1 non-coding upstream 747288 2827553 ~ 2828675 (+)
XLOC_003149 FQ790208.1 non-coding upstream 959940 2615070 ~ 2616023 (+)
XLOC_003176 CR559931.1 non-coding downstream 1897200 5481753 ~ 5481884 (+)
XLOC_003178 CU855733.1 non-coding downstream 1946890 5531443 ~ 5531576 (+)
XLOC_003180 NA non-coding downstream 2017787 5602340 ~ 5602721 (+)

Expression


Co-expression Network