G1248939


Basic Information

Item Value
gene id G1248939
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 795499 ~ 795813 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1426331
ctgcacttgattaATTTATGAAATTGAAAAAaagtggcctttactggttctaacagcagacctatcagcttgctgacAACTCTTagaaaattgttggaaaaatggtgtttgaccaaatacaaagctatttctctgtaaacaaattaaaacagactttcagcatgcttatagagaagggcactcaacatgtactgcactgacacaaatgactgatgattggttgaaagaaattgataagaagattgtgggaactgtactgttagatttcagtgcagcatttgatattattgaccataacctgttgttgaaaaaaca

Function

NR:

description
Collagen alpha-4(VI) chain, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1426331 True 315 lncRNA 0.35 1 795499 795813
Loading

Neighbor

gene id symbol gene type direction distance location
smpx smpx coding downstream 548341 211098 ~ 247177 (-)
LOC118938957 NA coding downstream 721507 73839 ~ 73992 (-)
LOC118938949 NA coding downstream 763065 16053 ~ 32434 (-)
sec22c sec22c coding upstream 30785 826598 ~ 843603 (-)
LOC118938951 NA coding upstream 35259 830248 ~ 832327 (-)
klhl40b LOC106590700 coding upstream 228761 1024574 ~ 1040867 (-)
hhatlb hhatl coding upstream 259150 1054963 ~ 1101022 (-)
LOC118938952 NA coding upstream 265525 1061338 ~ 1062552 (-)
G1248937 NA non-coding downstream 1843 793392 ~ 793656 (-)
G1248934 NA non-coding downstream 9441 785854 ~ 786058 (-)
G1248918 NA non-coding downstream 58002 737213 ~ 737497 (-)
G1248912 NA non-coding downstream 72504 722772 ~ 722995 (-)
G1248907 NA non-coding downstream 81997 713094 ~ 713502 (-)
G1248955 NA non-coding upstream 38226 834039 ~ 834576 (-)
G1248973 NA non-coding upstream 74966 870779 ~ 890373 (-)
G1249001 NA non-coding upstream 109988 905801 ~ 907707 (-)
G1248959 NA non-coding upstream 112181 907994 ~ 912450 (-)
G1249325 NA other upstream 607383 1403196 ~ 1405878 (-)
G1249326 LOC106581475 other upstream 613376 1409189 ~ 1411097 (-)
G1249729 NA other upstream 1011171 1806984 ~ 1807621 (-)
G1250031 LOC107579696 other upstream 1551778 2347591 ~ 2348068 (-)
G1250592 NA other upstream 2191301 2987114 ~ 2987410 (-)

Expression

G1248939 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 20.
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G1248939 Expression in each Bioproject

Bar chart with 19 bars.
G1248939 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
End of interactive chart.

Co-expression Network