G1248959


Basic Information

Item Value
gene id G1248959
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 907994 ~ 912450 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1426359
cagagtagaacacagcAGAGTAGAAcatagcagagtagaacagagcagaacagagcagagtagagtagaacagagtagaacagagtagagcacagcagagtagaacacagcagagtagaacacagcagagtagaacagagcagagtagaacagagcagaacagagtagagtagaacagagtagagtagaacagagtagagtagaacagagtagagtagaacagagcagagtataaCAGAGtatagcagaacagagcagagcagaatatagcagaacagagcagagtataaCAGAGtatagcagaacagagcagaacagagcagagtataaaataatagagtagaacagagtagaacagagcagagtatagCAGAACAGAGCCGAGTATAACAGAGtatagcagaacagagcagaacagagcagagtatagtagagtagaagagAGTAGAACACAGCTGAGTAGAAcatagcagagtagaacagagcagagtagaatagagtagagtagaacagagtagagtagaacagagtagaacagagcagagtagaacagagtatagcagaagagagcagaacagagcagagtataacagagtagagtagaacagagcagagtagaacagagcagagtagaacagagcagagtagaacaaaGCAGAGTAGAACaaagcagagtagaacagagtagagtagaacagagcagaggataacagagtagagtagaacagagcagagtataatagagtagagtagaacagagcagagtataacagagtagagtagaacagagctgTGTATAACAGAGTAGATTAGAACAGAGCAGAGgataacagagtagagtagaacagagcagagtataacagagtagagtagagtataacagagtagaacagagcagagtcgAGTATAACAgcgtagaacagagcagagtagagtagaacagagcataACAGAGTATaacagagtagagtatagtataacagagcagagtagaacagagcagagtcgAGTACAGTCTTTAACAGATGGAGGAATGAGGAAAATGACCCCTGACTGCCCAGCCACAGCCAGCTGGGGTTTACAGCTCTAGATAGTCTGTATTTCCCACAataacagttcagacagacagacagacagagactctgACAGacttagagactgacagacagagagactgacagacagttagactgAAGGACAGAAAggctgacagacagacggacagacagagactctgacagacagaaaggctgacagacagatggacagagaggctgactgacagacagagagactgtgatacagatggacagagagggtgtgagaaagacagagagggtgtgagacagacagagactgtgagacagatggacagagagggtgtgagaaagacagagagggtgtgagacagagagggtgtgAGAAAGACTGAGAttgtgtgagacagacagagagggtgtgagacagatagagagggtgtgagacagacagagagggtgtgagacagacagagagagagagggtgtgagaaagacagaggagaacAGACCTCTAAGAGCTGCTGCCATTTTAAACTTTTTATTGTCCTTCTGTTCGATGTAGTTctatcacacagacacagaggcccAGAGAAGGGGAGCAGAAGACACATTAAAACCTTGGATTCTTTCTTATCCTCCAACCTATTCAGACTCCCCACACTGGGTCATGAGCAGAGCACAACTATTTAGTAGGGCCCTGCCTGTCTGTATCTAGGAGAACTGTGACACAGCTGAGCTAACTGTATAACACTGCTGTGGTCTTGGCTGGACACTCAAC

Function

NR:

description
PREDICTED: uncharacterized protein LOC106581609

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1426359 True 1818 lncRNA 0.45 6 907994 912450

Neighbor

gene id symbol gene type direction distance location
sec22c sec22c coding downstream 64391 826598 ~ 843603 (-)
LOC118938951 NA coding downstream 75893 830248 ~ 832327 (-)
vipr1b vipr1 coding downstream 102601 572798 ~ 805393 (-)
smpx smpx coding downstream 660836 211098 ~ 247177 (-)
LOC118938957 NA coding downstream 834002 73839 ~ 73992 (-)
klhl40b LOC106590700 coding upstream 112124 1024574 ~ 1040867 (-)
hhatlb hhatl coding upstream 142513 1054963 ~ 1101022 (-)
LOC118938952 NA coding upstream 148888 1061338 ~ 1062552 (-)
LOC110489513 NA coding upstream 315390 1227840 ~ 1288739 (-)
LOC110489519 LOC106590690 coding upstream 519911 1432361 ~ 1472553 (-)
G1249001 NA non-coding downstream 287 905801 ~ 907707 (-)
G1248973 NA non-coding downstream 17621 870779 ~ 890373 (-)
G1248955 NA non-coding downstream 73418 834039 ~ 834576 (-)
G1248939 NA non-coding downstream 112181 795499 ~ 795813 (-)
G1249013 NA non-coding upstream 12870 925320 ~ 925998 (-)
G1249030 NA non-coding upstream 101361 1013811 ~ 1019927 (-)
G1249042 NA non-coding upstream 136083 1048533 ~ 1049103 (-)
G1249043 NA non-coding upstream 140311 1052761 ~ 1053406 (-)
G1249044 NA non-coding upstream 141052 1053502 ~ 1053975 (-)
G1249325 NA other upstream 490746 1403196 ~ 1405878 (-)
G1249326 LOC106581475 other upstream 496739 1409189 ~ 1411097 (-)
G1249729 NA other upstream 894534 1806984 ~ 1807621 (-)
G1250031 LOC107579696 other upstream 1435141 2347591 ~ 2348068 (-)
G1250592 NA other upstream 2074664 2987114 ~ 2987410 (-)

Expression


Co-expression Network