XLOC_003171 (gnl3)


Basic Information

Item Value
gene id XLOC_003171
gene name gnl3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 3959495 ~ 3971035 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006253
GGAAGCGGAAGTGAGGAGTTGAGACACGTGCTGCTGTTCTGTGAGCGCGTGCTGGAGCTGCGGCAGACATGAAGAGACCGAAGTTGAAGAAGGCGAGCAAGCGCTTATCATGCGCTAAAcgctacaaaatacaaaagaagGTTCGGGAGCACAATCGTAAATTAAAGAAAGCCGCAAAGAAGCAAGGCATAAGTCGAAAGGCCAAAAAAGATATTGGAGTCCCAAACAGTGCGCCTTTTAAAGAGGAAGTGCTTCGAGAAGCTGAGCAGAGAAAACAGGAGCTTGAAACTCTGAAAGAGCAAAACAAGATCGTGAAGCAGCAAGAAAAGGCTGCCAAGCGGAAAAAGGAGAAAGATGCAGCCAGTTCAGTAAAAGAGCCTGCAGCCAAGAAAGCTAAAAAGGCAGCGAAAATCAAAGAAGCAAGAGCAGCGATAGTTAAAGTGAAGAGCGCTAAAACATTCAAATGCCAAGAACTCAACAAGGTGATTGAGGCGTCTGATGTGATCGTGGAGGTTTTGGATGCCAGAGATCCTCTGGGCTGCCGCTGTCCTCAACTGGAGGAAATGGTCCTGAAACACGAGGGAAAGAAGAAACTCTTGTTCATATTGAACAAAATAGATCTTGTTCCTAAAGATAACCTAGAGAAGTGGCTCCACTTTCTTGAAGCCGAGTGTCCAACTTTTCTGTTCAAATCATCGATGCAACTAAAGGACAGAACAGTGCAACAGAAGAGGCAGCAGCGAGGAACTAACGCAGTTCTGGATCACAGCCGAGCAGCTTCCTGTTTTGGAAAAGACTTTCTCCTACAGACACTTAATGACTTGGCGAACAAGAAAGAGGGCGAAACCATGCTAAAAGTTGGCGTCGTCGGTTTTCCTAACGTTGGAAAGAGCAGCATCATCAACAGTTTGAAAGAAATGCGAGCGTGCAATGCTGGCGTACAGAGAGGATTGACTAGGTGTATGCAGGAAGTGCATATTACCAAGAAAGTGAAGATGATTGACAGTCCCGGGATTTTGGCGGCCCTCAGTAACCCTGGAAGTGCGATGGCCCTCAGGAGCCTGCAGGTGGAGGAGAAAGAGGAGAGTCCGCAGGAAGCCGTCAGGAATCTACTCAAACAGTGCAATCAGCAGCATATAATGCTACAGTATAATGTCCCAGACTACAGAAGCTCCTTAGAGTTTTTGACCACCTTTGCCATGAAGCACGGGCTCCTGCAGAAAGGTGGCGTTGCAGACACTGAACTGGCAGCCACAACATTCCTCAACGACTGGACAGGGGCTAAGCTGAGTTACTACAGCAGAGTTCCAGAGCGACAGGGTCTTCCCTCTTACCTGTCCGACGCCATCGTGACTGAACTGCAGTCAGATGTGGATATGGATGCTGTGAAGAAGGGGAACGAGAATGTAAAGAGAAGTGTTCGCTTTCCAAACCTCGCGAGCTGCATAAGCTTTGACTCCAGTGGTCCCACTGCTGGAGTGCTGGATGTCAGTGAGCTGCCTAAAGAGATCTTAACAAAGGCAGCAACAACAACAGATGCAGAAGAAGAGAAGATGGATACGACAACCAACACAGATGAGCCTGAGGCCGAAAGCCATATTTCATCAACCGTGGAACCGATTCAGGAACCAACAGAAAAGAGAAAAGatAAACCAGCAAAAGAAGTGAAGTTTGTACCAGTCAACACTGACCTGACGTCAATGCAGAACAAGAACAATGAGGATGCATACGATTTCAACACAGACTTTGTGTAAAAATTCACTATAATTATTTACATGGACTGAGAGGAATTAAATAGTAAAATGCACTCAGTTGCAGTGCATCTCATGTTTGTatgtaataatacataaaatgtttgtttcaCTAAATACAAGGTAAAACTCTTACATTGCTTACAAAACTTATACTGAGCTTTATTCAATACTTGGTTAGAACCATTTTCCCCTTTATGTACAAATTAGCACACTTTCCCCTTCAGATTTGAAGCTGAAATATTCATGTAACAGAAACGTGGTGTCAAAAATAGACATTTGAACTATCACAGGTTTGTCTTAAAGTCCTGAACAAGTcgactacactacctgacaaaa
>TCONS_00006254
CAACAGAAGAGGCAGCAGCGAGGAACTAACGCAGTTCTGGATCACAGCCGAGCAGCTTCCTGTTTTGGAAAAGACTTTCTCCTACAGACACTTAATGACTTGGCGAACAAGAAAGAGGGCGAAACCATGCTAAAAGTTGGCGTCGTCGGTTTTCCTAACGTTGGAAAGAGCAGCATCATCAACAGTTTGAAAGAAATGCGAGCGTGCAATGCTGGCGTACAGAGAGGATTGACTAGGTGTATGCAGGAAGTGCATATTACCAAGAAAGTGAAGATGATTGACAGTCCCGGGATTTTGGCGGCCCTCAGTAACCCTGGAAGTGCGATGGCCCTCAGGAGCCTGCAGGTGGAGGAGAAAGAGGAGAGTCCGCAGGAAGCCGTCAGGAATCTACTCAAACAGTGCAATCAGCAGCATATAATGCTACAGTATAATGTCCCAGACTACAGAAGCTCCTTAGAGTTTTTGACCACCTTTGCCATGAAGCACGGGCTCCTGCAGAAAGGTGGCGTTGCAGACACTGAACTGGCAGCCACAACATTCCTCAACGACTGGACAGGGGCTAAGCTGAGTTACTACAGCAGAGTTCCAGAGCGACAGGGTCTTCCCTCTTACCTGTCCGACGCCATCGTGACTGAACTGCAGTCAGATGTGGATATGGATGCTGTGAAGAAGGGGAACGAGAATGTAAAGAGAAgtacaccttactagtaccaagttGGACACCCTATTGCCTTCAGAATTGAACAGATTCAacggtactggaaatattcctc

Function

symbol description
gnl3 Predicted to enable GTP binding activity. Acts upstream of or within several processes, including exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); neural retina development; and regulation of exit from mitosis. Predicted to be located in nucleus. Predicted to be active in nucleolus. Is expressed in head; immature eye; midbrain; and somite. Orthologous to human GNL3 (G protein nucleolar 3).

GO:

id name namespace
GO:0042127 regulation of cell population proliferation biological_process
GO:0003407 neural retina development biological_process
GO:0000467 exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0007096 regulation of exit from mitosis biological_process
GO:0045664 regulation of neuron differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-030131-616 Predicted to enable GTP binding activity. Acts upstream of or within several processes, including exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); neural retina development; and regulation of exit from mitosis. Predicted to be located in nucleus. Predicted to be active in nucleolus. Is expressed in head; immature eye; midbrain; and somite. Orthologous to human GNL3 (G protein nucleolar 3).

Ensembl:

ensembl_id ENSDARG00000006219

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006253 False 2090 mRNA 0.45 15 3959495 3971035
TCONS_00006254 True 773 processed_transcript 0.49 6 3965727 3968309

Neighbor

gene id symbol gene type direction distance location
XLOC_003170 NA coding upstream 176370 3771266 ~ 3783125 (+)
XLOC_003169 NA coding upstream 223692 3615750 ~ 3735803 (+)
XLOC_003168 cdab coding upstream 366377 3585934 ~ 3593118 (+)
XLOC_003167 si:dkey-33m11.8 coding upstream 374942 3575963 ~ 3584553 (+)
XLOC_003166 CR558302.1 coding upstream 393245 3538988 ~ 3566250 (+)
XLOC_003172 spcs1 coding downstream 18368 3989403 ~ 3993738 (+)
XLOC_003173 camk1b coding downstream 55194 4026229 ~ 4132662 (+)
XLOC_003174 ptprga coding downstream 982929 4953964 ~ 5463254 (+)
XLOC_003175 cse1l coding downstream 1497594 5468629 ~ 5493191 (+)
XLOC_003176 CR559931.1 coding downstream 1510718 5481753 ~ 5481884 (+)
XLOC_003250 BX324177.11 misc downstream 7374768 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 7401851 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 7415327 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 7446998 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 7458358 11429393 ~ 11429689 (+)
XLOC_003164 NA non-coding upstream 625781 3331113 ~ 3333714 (+)
XLOC_003160 NA non-coding upstream 752797 3203487 ~ 3206698 (+)
XLOC_003159 dre-mir-724 non-coding upstream 782725 3176686 ~ 3176770 (+)
XLOC_003178 CU855733.1 non-coding downstream 1560408 5531443 ~ 5531576 (+)
XLOC_003180 NA non-coding downstream 1631305 5602340 ~ 5602721 (+)
XLOC_003187 NA non-coding downstream 1984230 5955265 ~ 5966389 (+)
XLOC_003189 CT573239.2 non-coding downstream 2098840 6069875 ~ 6074783 (+)

Expression


Co-expression Network