G1253720 (LOC106590648)


Basic Information

Item Value
gene id G1253720
gene name LOC106590648
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 7086331 ~ 7089035 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1432232
TGAAAAAAATGAATTAATACAAATATGAATTTCAGTTGTTTTGTCCTGCTGTACCACAGGCTCTGTTGGTGTCACAGTTTCTGACACCTTTATCAGTTCCTACCTTTCTAACAGTACTACGCATGTGTTTGTTGGACTTACAGTTCTGTAACTGAAATGCACTTCATGAACGTAGTATACAATATAATGCCTTGTTTGGTCAACAATGTCAGGGTTTAAGAGGTTAAAAACAGACAGCATATTAGACCTATAGCAGTTCATTGTTGACTATCTGAtgatacctctgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtcagaccttGCGTTTTGCCAGTGCTGTTTGGTAAACACATTTCCCATCAGTCTGAATGTAGCTGATAGTCATACTGTTCTCTGTGACTACAAAGTAAGCGAATCCTCCGGACGTAAGGTTGACAGCGTTGGAGAACCGTTGCCATGACGACGGGAAGGTCTTGACGTGTTTGGTGGATAGGTCTACAAAGTTCCCGCTGCCGCTGACCACGTAGGGACTCCCATCATGCTCTCTGATAAACTGGTGAGAGTATAGAGAGTCAGGTCAACGTCAGTTGTCTTTTAAAACTTAACACTTCAAACTGTCACTTTGTtattgtatgtatatgtatggtCATAATATGTATAATAGCCACCTGTATGCTGTGGTCATGGCCACTCAGGTAGACTGTGACATTATACTTCTTCAGCAGAGGCCGTAGTCTACGCAAAAGACACTTTGTAGGGCCGTGATGACCAATGGACCACACAGGATAGTGACCAGCCACCACAAGGAACTCTGACCTGGGAGAGAATGACAGATAAAAGACCGTGTTAGCCCCCTGAGCTAAAGCAGAGGTATTATCTTCTGGAAGCTAGCACAAGTCTTCATGTGTCAGGAAAGGTTACTCATCGTGCGCGTGTGGTTCAACAAACCCAACTCTCGTTACAGGAGTTTTCTATTCCACATTCAGTAACAGTTGAGgaatgtgtgtgtagcagtgtgaaGGTATTTATTGATTCAAATAGTGATGAGAGTGGAGTCTAAAAGAGGGGTGTGGTCAGTCAGGGATCTCAAAAAGAGGGGTGTGGTCAGTCAGGGATCTCAAAAAGAGGGGTGTGGTCAGTCAGGGATCTCAAAAAGAGGGGTGTGGCCAGTCAGGGATCTCTAAAAGAGGGGTGTGGTCAGTCAGGGATCTCTAAAAGAGGGGTGTGGCCAGTCAGGGATCTCAAAAAGAGGGGTGTGGTCAGTCAGGGATCTCAAAAAGAGGGGTGTGGCCAGTCAGGGATCTCAAAAAGAGGGGTGTGGTCAGTCAGGGATCTCTAAAAGAGGGGTGTGGTCAGTCAGGGATCTCTAAAAGAGGGGTGTGGCCGGATCTCTTCATGGTTCGAAATCTTCACATTCTTTTCTCTAGGCCCAAACGACAACTTAttaaatcaaatacttttatttTCCTCCACCTTGAAAAACATTTAATCCATCCAAGCCATTATCTACTCACAGAACAAGTTGTCTGCTGTTTCACCGATGTGCTTGAACAGTGTATACTTAATGAGAGGCTGTGTTTGACCTGTTGCCTTTCAGGGCCAGTTTCTCAAACCCAGATTAAGCATAGTCCTAGACTATCTATGCTTAATCTGGTTCCAGGAAACTGGACCATATGGACCTTACTTGCTGTTTGCCAGTCTGGAGTTGATCCAGTCCAACTGCTTGGCAGAAGCCCCCAGGACTTCCTCTCTTTTGGGCTGGGTCCCCTCATAGGTGTTCCCACATAGCACCACCGTGTCAATCATCAGGATGGTCACTGACACGTTACTCTGGGGAACCTTGAACTGGAGCTCATAGTACAACTCCGGGAACCTCCTGAGGCAACAAGAGGGGAGAACAACACAGAATGTCCTGttttgtgtggctcagttgGATGCGTGGCGTTAACACACCGTTTTTAAAGATCTCTACTTAAGCTGCTCACCATCTCTTCGATCTGCTCGAGTAAGCGATCTGAGCGGAGACGTTGTTAATGTGGTCATGGTTCCCTGCCACCAAGTACCAAGGGATGTCAACCAGCGAGGAATGGGAGAAGACACCCTCAAAGGTACACTGCAGGAGAAATAAAAAAGACCAAAAAAATTGATAATTACCAACCCAGGAAAATGACTGAAGGATGAAAAACTAGAGTGATATGATATATAACggatatatatataacatatcaATAGTCATAGTTAGTTATAATGAATAAAAATTATGTGTGCTGCAACACTAATACAATCTGAATGCTCTGAAGAAATAGTTGATGTACAATATTTTACCACAAGAGGGCATGACGCTTCACTTTATTTCAGGGGGGAAAAAAAAGGAGAATCAAGTGCTCTAGGAGTGAGAAAAGAAAGTGTCCTCTTCGCTATACAAGAACACGGTGATCTGAACGCCGTCTTGTCAGTTTGTATTACGTCACTGTGTTCTTCAACTAACAAGAGgattcactacagaccctggtttcgattccgggctgtatcacaaccggccgtgattgggagtcccatagggcgg

Function

NR:

description
tartrate-resistant acid phosphatase type 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1432232 True 2575 TUCP 0.45 2 7086331 7089035
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110489539 LOC106590649 coding upstream 443 7075115 ~ 7085888 (+)
LOC110490889 LOC106578491 coding upstream 48572 7008276 ~ 7037759 (+)
alg14 alg14 coding upstream 84267 6997759 ~ 7002064 (+)
LOC118938939 NA coding upstream 139915 6927559 ~ 6946416 (+)
LOC118938938 NA coding upstream 587984 6407791 ~ 6498347 (+)
LOC110489541 arhgap29 coding downstream 21172 7110207 ~ 7139563 (+)
LOC110490896 NA coding downstream 774632 7863667 ~ 7866078 (+)
LOC110490897 LOC106590637 coding downstream 810071 7899106 ~ 8094419 (+)
LOC110489552 LOC106590631 coding downstream 1352624 8441659 ~ 8453058 (+)
LOC110489555 LOC106590626 coding downstream 1541318 8630353 ~ 8649744 (+)
G1253733 NA non-coding upstream 36582 7048555 ~ 7049749 (+)
G1253709 NA non-coding upstream 106197 6979057 ~ 6980134 (+)
G1253701 NA non-coding upstream 126229 6959160 ~ 6960102 (+)
G1253656 NA non-coding upstream 199591 6886449 ~ 6886740 (+)
G1253640 NA non-coding upstream 213863 6872215 ~ 6872468 (+)
G1253727 NA non-coding downstream 4354 7093389 ~ 7095040 (+)
G1253747 NA non-coding downstream 14656 7103691 ~ 7104899 (+)
G1253770 NA non-coding downstream 51555 7140590 ~ 7157036 (+)
G1253820 LOC106590641 non-coding downstream 124009 7213044 ~ 7214641 (+)
G1253703 LOC106590651 other upstream 117915 6964482 ~ 6968416 (+)
LOC110490886 LOC106590655 other upstream 758257 6242892 ~ 6328082 (+)
G1252615 NA other upstream 908646 5802424 ~ 6177685 (+)
tram1 tram1 other upstream 1177732 5870409 ~ 5908887 (+)
G1255589 NA other downstream 1930210 9019245 ~ 9019731 (+)
LOC110489557 LOC106590621 other downstream 1968244 9050544 ~ 9061028 (+)
G1257500 NA other downstream 4045809 11134844 ~ 11135414 (+)
G1257551 NA other downstream 4162892 11251927 ~ 11269539 (+)

Expression

G1253720(LOC106590648) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 0.3.
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G1253720(LOC106590648) Expression in each Bioproject

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G1253720(LOC106590648) Expression in each Sample
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Co-expression Network