XLOC_003173 (camk1b)


Basic Information

Item Value
gene id XLOC_003173
gene name camk1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 4026229 ~ 4132662 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006256
GTGACGTCATGGGGCAGCGCTGACAGACTGGGTCAGTGAGAGGAACCAGCAGTCAGAGCTGCGAGACCAGTGCAAGACGCGGTTCTGCACCTCTCCGGTTTACAGTTTCTCCATCATCGACCGTAGCAAAATGCCCCTGGGAGAGGATGGACCCTCTTGGAAAAAGAAAACAGCGAACATCAAGGATATCTATGACTTCAAAGAGGTTTTGGGCACAGGGGCTTTTTCTGAGGTGATGCTCGCTGAGGAGAAGAGGACGAGGAAACTGGTGGCCGTAAAGTGCATAGCCAAAAAAGCTCTGGAGGGAAAGGAGAACAGCATTGAAAATGAGATCGCCGTCCTCCACAAgaTTAAACATGCCAACATAGTATCCCTGGAGGACATCTTTGAGAGTAAATCACACCTCTACCTTGTCATGCAACTAGTGTCTGGCGGCGAACTCTTCGACAGGATTGTGGAAAAAGGATTTTACACTGAGAAAGATGCCAGTAAGCTCATCCAGCAGATCCTGGACGCCGTCAAATACCTGCATGACATGGGCATTGTGCACAGAGACCTGAAGCCGGAGAACCTGCTGTATTACAGTATGGATGAAGAATCCAAGATCATGATCAGTGATTTTGGCCTGTCAAAGATTGAGGGTTCGGGCAGTGTGATGAGCACGGCGTGTGGCACTCCAGGATATGTAGCTCCTGAGGTCTTGGCGCAGAAGCCGTACAGTAAAGCGGTGGACTGCTGGTCAATCGGGGTCATCGCTTACATCCTATTATGTGGCTATCCCCCCTTTTACGATGAGAATGATGCCAAGCTCTTTGAGCAGATCCTGAGGGCCGAATACGAGTTTGATTCACCTTATTGGGATGATATATCTGATTCGGCCAAAGATTTTATTGTCCATTTAATGGAAAAAGATCCCAATCAGCGTTACACGTGTGAACAAGCCCTTCAGCACCCATGGATTGCTGGAGACACGGCCCTGGATAAGAACATCCATGAATCTGTCAGTGCCCAAATTAAGAAGAACTTTGCCAAAAGCAAGTGGAAGCAAGCGTTTAATGCCACAGCAGTGGTCCGGCACATGCGCAGGCTGCAGTTGGGCACCAGTCAGGAGGGTCCGCCGCAGAACACACTGCCCAGCCCATGCCATGGTCACCTGCTGCTGCCCGAGGGGGACGAGGACGACAGCGTGAGGGAAAACAGCGGCTGTTCTGAGGGCGTCAGTGACGGGAACGACATCCAGAACTGCAGCTACCACCTCCACCCTACTAGCCGGGTCTGAGTGTCAATCATCCTGAAACAACCAATGACTGACTGTCCTGTTTTATTTTTCCCACCGGAGTCCTGCCACACCCCTCAGGTCTGGCCAGGAAACACTGCGTTGCTCCAGCATCCTGCCACTTGGAGGCGCTGCAGTGTAAAGAAACCAGGTGGGGGAAACGGGGTCACTACTATTCCAATGGAGAGAGAGAGTCTGTTTAGTGAGAGGTCGGGAACGAAAAGAGACCGGAAGATTGCTATTGGAGCTTCGTGGGGGTATATATATGCTATTGTGGGAGCCGGATAAAGATTGGACAGTGTTTTAACTCTTTATTTTAAGAACAACTACTCTGtctggttttctttttctttttcagaactAAAAGATGTGCACGGGCCTGCTTCTGTTTTAATTCTTAAAGTTGTTGCcacagttgttgttgttgagatGTGGCTTAGTTTATTAGAGATACAAGTTTGGAATCAGTATAATTTGTCTCAGTGTTTTATAATCAGCTTATTTTGCTCacaaatgctgcatttatttgattaaattaaatagtttgtgaaatgttattgcagtgTTACTGTAAATAACTGATATTTTATTGAATGTACACTGCAAAAGATCCAGAAAtcatttgcttaccccattgacagattatttagctttttttaggggaaaaaaaacactttattttgatgcattatttttaaagcaagactatataattattaataattaataataattaaaataataaataataatatattaatattaaaatgtaatcaataaaatgtaattattattaattttaggtGGTTTAATGCAGAATTTTAAGCTTGGTTAGTTACATAATGCTTCAAATATTCTAGTATCATGAATATTCTGCTCTCGAAGATTGTTGTTAATGTAATTGTTGTCGGTTTGGAAAGCAAACTAAAACGTTTgttttaaaaaacgttttaaaaagtaccaaaataaaaattaaataaacatttatatacctTTATTCATTACAATAAATTGTTCAAGAGCAAAAATACatctttataatgtaaaaaaaaaaaagatagcgAATGAAAGCTGttgttttttactttctttttttaaaacgtATCACAGTTTCcatcttgacaaaaaaaaagtctgcattattttgataattttccgatcattttaagtattattattttaaaaagtttttgtcttgtttctagtctaaatatctaaaaattcttaaatcaagaagtattttatagacaagtaaaatatattgtgttgatttcagaaataatacatcaaaattaagtgagttttcccttaaaataagcaaaatgatcttgtttttgctttgacaaGATTATTACCCCATGTGCAAattatgtttgcttgtttttttttggcatttggtctaaaaacaagacaacattttttttttaataagaaaagcattttttgaggtgaagtttaaaatgtttttaattacatttaattatttttaattcttgTGGTTGAAAGCTGAATTTCAAGCTTTTACGTAATCCTTCAAATATTCTAGTGTCATGTTCTgctcaaaaacaaacattattattatgattattattattattatgattattatttgttgttgttgttggtttggaaaataatataattcaaaattaccataataaaaattaaataaacatttgtttacCTTATGCCTCACAATAAATTGTTCAAGAGCAAAAATAgatctttttgtttaaaaaacgaTAACAAATAAAAGCTGTTATTTtgaactttctttctttttttaatcaaaaaagcCTAAACATAAAATGTTTCACAGTTTCCATCTtatataaaacaagacaaaaaattaaaataaaatcagcgcTGATACTTGTGAAATCATTATTATACTGCACAAATAATGCTTTACTTTCTTAAAGTTTGTCTCGTATCAAGTTCAAacatctaaaagttcttaaatcaactCAATAAtaagtcaaataataataaataagtcaaaataatcttgttttttgctTTCACTTAAGtttattcagcttgttttaaggaaaaactcgcttcattttgaAATGAAGTATAAAAGCAGAAGCTTTTTTCTAGTTCAAGTAtcaaacaattcttaaatcaagaagcattttcttgtttaaaacataaaatgtaattttttaaaagtaatagtaactaaaaaaaatattgtccttttttagcaaagaaaaaaatctaaagtttaCCTCAAAACAgactaaataatctgccaatagggtaagtaaaataatttaacttCAAAGCGCATAAACAATATTCccaatggcagattattttgcttgttttactcaaaaactcacttattttcaacacattataTCTAAAAACAAGTCAACATTGTTTGCTTGTCTAGCAAAAGCTAAttgatttaatccattttagttatttggactagaaacaagacaagctTAGTGTAGTGATTTTGCATGAATAACAACTGATTATAACATGAGCAAATCATCATACTGTAATGATTTCTGAGACTGAAGTAAAGAAAGCTgaagaaaattcagctttgaattgCTTAAGTAAATTACATTTGAAACTACACTGGATAAGAAAACACTCACTGTTTTCAACAAACTTGTATAATATTTCACCGTTTAACAGCTTTCACGGTgtgttttaacaaataaatgcagccttggtgagcagaatagccttcttttaaaactaaattgtaaTGTTAACATTTAATGAGATGATTTCTGACATTAGGTTATGCTAGAATGCACATCTCAAACATCAACTATTCCTTCTTTTTCAACTAGCAGACTTCACATCCATCAGATTCTACATATTAGTCATGTTGCCAGATCCTCATAAGACGCACTGATGGAgtgtacattacattttaaaacatttaaaatgcttttaaacatttaatgttgttgttttttttgtgcacTAAGTCTGCTCGACAGGTCACGAGTTCATTGTCAGTATGTCCAAGAGCGTCTTTCTCGCTTCAGATGTCTTCTGTGGTGCCTTCATGCATTCAGTATCAACGTTTTACTTCATTTTGTGTTCAGATATATTTAGGTTTGGGAATGTCGGACGCTGTATTTCTCGTTAACACATTGCTGTTTACCGGCACATTCACCTACAGTACATGGCATGAACAGCTATGCAATGTCGGTGGACGCTTTTGGAAATGTCTAATGTTTAATGCTGCCATTCTGTAAATACtgctaaacttttatttatttattttattttttggtaaaccCCTTTCTATTATAGCATAAAAACACTCAGGGGAGGAATAGAAATCagattttgatatatttaatgaTCGTTTtacaagtaaatatatatataaagtatgcttaaaggggacctattatgcaaaatacacttttataaggggtttaaacacagcagtgtgtgaataaagCCAGACTCTAATGGtcaacatttattaattgtattttttataatcacacttgataaaattCTCCTTTATGCATGTCATCAAAGGAGGAAAGCCACGCCCATTACTGACgatttctccctcattagcataaacagccctgagtgagaagcagtcgCAGGGcattagagttttgaatctgccactatgctgacatatAGGCActcatagctccgccctcttttaaaaagagcacaatctgatttgaatttaaagggacagtcaccAAACGGCACAATTTATATCATGGCCTAAAAGGGGCAATTGTAaagcattatttgtgtggtattttgagctgaaactttacatagggacatcagagatgtatttttctttcttgtaaaaaaggggcataataggtcccctttaatacaTGTCACTATGAGGCTGTGCTCCAAACTctataacttttattttgtttcttcttttcAATGTTGGAACCTGTATGAAAGTAACCTCCATTAAATGACATGAATGTGTGACTTG
>TCONS_00006257
AGTCAGAGCTGCGAGACCAGTGCAAGACGCGGTTCTGCACCTCTCCGGTTTACAGTTTCTCCATCATCGACCGTAGCAAAATGCCCCTGGGAGAGGATGGACCCTCTTGGAAAAAGAAAACAGCGAACATCAAGGATATCTATGACTTCAAAGAGGTTTTGGGCACAGGGGCTTTTTCTGAGGTGATGCTCGCTGAGGAGAAGAGGACGAGGAAACTGGTGGCCGTAAAGTGCATAGCCAAAAAAGCTCTGGAGGGAAAGGAGAACAGCATTGAAAATGAGATCGCCGTCCTCCACAAGTGAGTCATTCATACAGCTGTTCCACTTCACTTACAGATAtacagatgacacacacacacacacactgttcgatgtaaaatacagactgtggaatgtatttttaacagaaatattctgtagatAAAATTTTTgattgaaaaatgttaaaaacagtagattactggcaaccacagctgccggtatttttcagtaaaat

Function

symbol description
camk1b Enables calmodulin-dependent protein kinase activity. Involved in activation of protein kinase activity. Is expressed in female organism. Orthologous to human CAMK1 (calcium/calmodulin dependent protein kinase I).

GO:

id name namespace
GO:0032147 activation of protein kinase activity biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0004683 calmodulin-dependent protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141014-1 Enables calmodulin-dependent protein kinase activity. Involved in activation of protein kinase activity. Is expressed in female organism. Orthologous to human CAMK1 (calcium/calmodulin dependent protein kinase I).

Ensembl:

ensembl_id ENSDARG00000029474

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006256 False 5243 mRNA 0.35 12 4026229 4132662
TCONS_00006257 True 495 lncRNA 0.44 3 4026279 4086851

Neighbor

gene id symbol gene type direction distance location
XLOC_003172 spcs1 coding upstream 32491 3989403 ~ 3993738 (+)
XLOC_003171 gnl3 coding upstream 55194 3959495 ~ 3971035 (+)
XLOC_003170 NA coding upstream 243104 3771266 ~ 3783125 (+)
XLOC_003169 NA coding upstream 290426 3615750 ~ 3735803 (+)
XLOC_003168 cdab coding upstream 433111 3585934 ~ 3593118 (+)
XLOC_003174 ptprga coding downstream 821302 4953964 ~ 5463254 (+)
XLOC_003175 cse1l coding downstream 1335967 5468629 ~ 5493191 (+)
XLOC_003176 CR559931.1 coding downstream 1349091 5481753 ~ 5481884 (+)
XLOC_003177 slc35e1 coding downstream 1366999 5499661 ~ 5515922 (+)
XLOC_003178 CU855733.1 coding downstream 1398781 5531443 ~ 5531576 (+)
XLOC_003250 BX324177.11 misc downstream 7213141 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 7240224 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 7253700 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 7285371 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 7296731 11429393 ~ 11429689 (+)
XLOC_003164 NA non-coding upstream 692515 3331113 ~ 3333714 (+)
XLOC_003160 NA non-coding upstream 819531 3203487 ~ 3206698 (+)
XLOC_003159 dre-mir-724 non-coding upstream 849459 3176686 ~ 3176770 (+)
XLOC_003180 NA non-coding downstream 1469678 5602340 ~ 5602721 (+)
XLOC_003187 NA non-coding downstream 1822603 5955265 ~ 5966389 (+)
XLOC_003189 CT573239.2 non-coding downstream 1937213 6069875 ~ 6074783 (+)

Expression


Co-expression Network