XLOC_031731 (ldlrb)


Basic Information

Item Value
gene id XLOC_031731
gene name ldlrb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 102506 ~ 109626 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062190
ATGCTCGGCTTCTGCTCAGAGAGGGAGAATCTCCGCCACCGCTCGCAGAATCCGCTCCCGGTACAGAACAGCATCTCTATCCGCCCTCAGAGCTCTAACGTGACGCTGATGGAGCCCCGGGTCGGCGTTCGGCTCGTCTGCTCGGTTCTGCTGCTCTTCTGGGTCTCCGGAACCGTGAAACACACATTATCAGCGCCGCTGTTTATCAGAGGATCTGACACAGACagggtgaaacacacacacacacacacacactctcctcaTGCTAATGACTCCTCTGCGTCTGCAGGACAGAAGACATGTGTGTCGGGTCAGTTCAGCTGTGGTGACCGGCTGAATCAGTGTGTGTCCTCCAGGTGGCGCTGTGACGGGAAGTCTGACTGTGAGAACGGCGCAGACGAGCAGAACTGCGcgcaGAAGAACTGCAGCGCTGAGGAGTTCCGCTGCGGCAGCGGGCAGTGTGTGTCGCTCTCCTTCGTGTGTGACGGCGACAGCGACTGCAGCGACGGCAGTGATGAGGCAGCgtgtcccacacacacacacacctgcggcCCCACAGCATTCCAGTGCAGCAGCCCAGCGGTGTGTGTGCCGCAGCTGTGGGCCTGCGACGGGGACCCCGACTGCGCAGACGGGTCAGACGAGTGGCTGCAGCACTGCGGGGGGGCGAGAGCGCGGGTCTGCCCGGAGCAGCAGATGCAGTGCCGCAGCGGAGAGTGTGTGCCCGACAGCTGGAGGTGCGACGGCGCATTCGACTGCAGCGACCGCTCCGACGAGGACAACTGcactgTGCACACCTGCCGGCCGGATGAGTTCCTCTGTGCAGACGGCGGCTGTGTGCCGGGGCTGCGGCAGTGTGACGGACACCCTGACTGTGGAGACCGCAGTGACGAGCTGGACTGCACCCccgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcagaccGAGTCTCCTCTTGCACTACTGATGTTCACTcgtctgcttttatttatttctgactCACTTGAATGTtcggtgtgtctgtgtgttactGAAGTGCTCTCTGATCCCTGTtgtaggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtg
>TCONS_00062191
GACAGAAGACATGTGTGTCGGGTCAGTTCAGCTGTGGTGACCGGCTGAATCAGTGTGTGTCCTCCAGGTGGCGCTGTGACGGGAAGTCTGACTGTGAGAACGGCGCAGACGAGCAGAACTGCGAAGAACTGCAGCGCTGAGGAGTTCCGCTGCGGCAGCGGGCAGTGTGTGTCGCTCTCCTTCGTGTGTGACGGCGACAGCGACTGCAGCGACGGCAGTGATGAGGCAGCgtgtcccacacacacacacacctgcggcCCCACAGCATTCCAGTGCAGCAGCCCAGCGGTGTGTGTGCCGCAGCTGTGGGCCTGCGACGGGGACCCCGACTGCGCAGACGGGTCAGACGAGTGGCTGCAGCACTGCGGGGGGGCGAGAGCGCGGGTCTGCCCGGAGCAGCAGATGCAGTGCCGCAGCGGAGAGTGTGTGCCCGACAGCTGGAGGTGCGACGGCGCATTCGACTGCAGCGACCGCTCCGACGAGGACAACTGcactgTGCACACCTGCCGGCCGGATGAGTTCCTCTGTGCAGACGGCGGCTGTGTGCCGGGGCTGCGGCAGTGTGACGGACACCCTGACTGTGGAGACCGCAGTGACGAGCTGGACTGCACCCccgtgagtgtgtgtgatgcgCCGAGCAGATTTAAGTGCAGCAGTGGTGAGTGCATCAGCGCAGAGCGTGTGTGTGACGGTCAGAGAGACTGCGGAGACGCATCAGACGAGCCAATCAGAGACTGCAACGTGAACGAGTGCCTCAGCAGTAACGGCGGCTGCTCTCACCTGTGTGTTGACCTGCGGCTCGGGTTCGAGTGCTCGTGTCCTGCCGGGTTTCGTCTGG
>TCONS_00062192
GACAGAAGACATGTGTGTCGGGTCAGTTCAGCTGTGGTGACCGGCTGAATCAGTGTGTGTCCTCCAGGTGGCGCTGTGACGGGAAGTCTGACTGTGAGAACGGCGCAGACGAGCAGAACTGCGcgcaGAAGAACTGCAGCGCTGAGGAGTTCCGCTGCGGCAGCGGGCAGTGTGTGTCGCTCTCCTTCGTGTGTGACGGCGACAGCGACTGCAGCGACGGCAGTGATGAGGCAGCgtgtcccacacacacacacacctgcggcCCCACAGCATTCCAGTGCAGCAGCCCAGCGGTGTGTGTGCCGCAGCTGTGGGCCTGCGACGGGGACCCCGACTGCGCAGACGGGTCAGACGAGTGGCTGCAGCACTGCGGGGGGGCGAGAGCGCGGGTCTGCCCGGAGCAGCAGATGCAGTGCCGCAGCGGAGAGTGTGTGCCCGACAGCTGGAGGTGCGACGGCGCATTCGACTGCAGCGACCGCTCCGACGAGGACAACTGcactgTGCACACCTGCCGGCCGGATGAGTTCCTCTGTGCAGACGGCGGCTGTGTGCCGGGGCTGCGGCAGTGTGACGGACACCCTGACTGTGGAGACCGCAGTGACGAGCTGGACTGCACCCccgtgagtgtgtgtgatgcgCCGAGCAGATTTAAGTGCAGCAGTGGTGAGTGCATCAGCGCAGAGCGTGTGTGTGACGGTCAGAGAGACTGCGGAGACGCATCAGACGAGCCAATCAGAGACTGCAACGTGAACGAGTGCCTCAGCAGTAACGGCGGCTGCTCTCACCTGTGTGTTGACCTGCGGCTCGGGTTCGAGTGCTCGTGTCCTGCCGGGTTTCGTCTGGCCAATCACACACACTGTGAAGATGTGGACGAGTGTGTGGACGCAGACGCCTGCTCTCAGATGTGTGTGAACCTGCCGGGCagctataagtgtgtgtgtgcggagGGATACGAGCTGGATCACATGACCAGAGACTGCAGAGCAGCCACAGgCCCTGAGGCGTTCCTGCTGTTCAGCACGCGGCATGAGGTGCGTAAGCTGGCTCTGGGCAGCCGGGAGTACACCGCTGTGCTCCGCCAGCAGAGGAACGTGGTGGCGCTGGATGTGGACGTGCAGAGAGACACACTCTACTGGAGCGACCTGAGCCAGAGGAAGATCTACAGcacgacaGCGTCTAATCCCACCCAGAACCGCACTGTGATTGACAGCTGGATCTCGCGGCCGGAGGGTCTGGCGGTGGACTGGGTTCACAGGAACATCTACTGGACGGACAGCGAGCAGCGCAGCGTCTCCGTGGCGACAGCAGACGGCAGCAAGCGCAAAACCCTGATCCACGGCCTGCAGAACCCCCGCGCCATAGTGCTGGACCCGCAGAGcaaCTTCATGTTCTGGTCAGACTGGGGTGTGTCTGCGCGGATCGAGCGCTGTGGGCTGAATGGTGCTGACCGCACGGCTCTCGTCACCGACAACATCGTGTGGCCGAACGGCATCGCACTcgatgtgcTGGGCCGCCGGCTGTACTGGGTGGACTCTAAGCTACACACACTCTCCAGCATCGGCGTGGACGGAAACGGACGACACACACTGATCCACGATCAGCAGACGCTGCCGCACCCGCTGGCGCTGGCCGTGttcgagGAGAAGGTCTTCTGGACTGACGTGGCCAATCACGGCATCTGGAGCGCCAACCGCCTGACGGGCCATGAGATCAGCGCCGTGCTGAAACACCTGCAGTCACCTGAGGACATCGTGCTGTACCACAGCCTGACACAGCCCAGCGGGCGGGACTGGTGCAGGGAGTCGGCTCTGCTGAACGGCGGCTGTGAGTTCCTGTGTCTGCCAGCGCCGGCCATCAACACACACTCGCCCAAATACACCTGCGCGTGTCCAGATCACATGACCCTGGCCGAGGACATGAGGACGTGTgtgccaggtCTGAACATCACAGCAGCACCCGGACACACTGACCCGTCACCCCCGACAACCACAGCCACACCCACCAGAGCCAGAACCACACCCACAAGGGCCGGAGCCACGCCCACCAGAGCAGCAGCCGTGACGTTTGAGCAGCGGATCGGAGACGCGCACAGGGgggTCAGTGAGCAGCTCGAGCCGGTCTCCAGTCCTTCCCAGCATCCCACAGTGCTGTACATCACTCTTCCTATTgttgcgGTGTGTGTGCTGGCTCTCGCCGCGGTGCTGATCTGGAGACAGTGGCGGCTGAAGAACACAAACACAATCCACTTCACCAACCCGGTGTACCAGAAGACCAGCGACGACACCGTGGCCATCTTCAGGAGCCCCAGCCAGGACGGATACACACATCCatcgtgtcaGATGGTCAGTGTGGATGAAGACGTCTGATCCTGAAGCTTCTCGTCACTTTAAAGCTGAAACTGATGGAAGAATGAAGGAAACTGATGATGAGCGAAACAGCGGAGCGCTCGCatgcctgacacacacacacacacacacacacacacacacagatctgtttGCACATTCAGACATGCGGCTGTTCTCAGTTGTAATCCGCTATATGAAGGTATTACtgatgtttattgtgtttttagtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcagaccGAGTCTCCTCTTGCACTACTGATGTTCACTcgtctgcttttatttatttctgactCACTTGAATGTtcggtgtgtctgtgtgttactGAAGTGCTCTCTGATCCCTGTtgtaggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtc

Function

symbol description
ldlrb Predicted to enable calcium ion binding activity. Predicted to act upstream of or within endocytosis. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in Alzheimer's disease; arteriosclerosis; familial hypercholesterolemia; hepatitis C; and migraine without aura. Orthologous to human LDLR (low density lipoprotein receptor).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1254 Predicted to enable calcium ion binding activity. Predicted to act upstream of or within endocytosis. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in Alzheimer's disease; arteriosclerosis; familial hypercholesterolemia; hepatitis C; and migraine without aura. Orthologous to human LDLR (low density lipoprotein receptor).

Ensembl:

ensembl_id ENSDARG00000026759

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062190 False 1110 mRNA 0.61 5 102506 109612
TCONS_00062191 False 838 nonsense_mediated_decay 0.64 5 103361 104722
TCONS_00062192 True 2789 mRNA 0.60 16 103361 109626

Neighbor

gene id symbol gene type direction distance location
XLOC_031730 SMARCA4 coding upstream 3576 83873 ~ 98930 (+)
XLOC_031729 crygm4 coding upstream 29510 72040 ~ 72996 (+)
XLOC_031728 sowahcb coding upstream 32602 68220 ~ 69904 (+)
XLOC_031727 mbd5 coding upstream 42304 48862 ~ 60202 (+)
XLOC_031726 MARF1 coding upstream 59447 31684 ~ 43059 (+)
XLOC_031732 ap1m2 coding downstream 2953 112579 ~ 119859 (+)
XLOC_031733 cdkn2d coding downstream 10555 120181 ~ 126359 (+)
XLOC_031734 fdx2 coding downstream 39779 149405 ~ 152955 (+)
XLOC_031735 zglp1 coding downstream 43520 153146 ~ 158614 (+)
XLOC_031736 CABZ01066694.1 coding downstream 59336 168962 ~ 172992 (+)
XLOC_031744 NA non-coding downstream 336007 445633 ~ 453037 (+)
XLOC_031750 NA non-coding downstream 849631 959257 ~ 960829 (+)
XLOC_031751 NA non-coding downstream 954312 1063938 ~ 1079773 (+)
XLOC_031752 NA non-coding downstream 1175839 1285465 ~ 1285894 (+)
XLOC_031753 NA non-coding downstream 1259424 1369050 ~ 1369364 (+)

Expression


Co-expression Network