XLOC_003174 (ptprga)


Basic Information

Item Value
gene id XLOC_003174
gene name ptprga
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 4953964 ~ 5463254 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006258
ATGCGGAGGCTACTGCGACcgcgctgctgctgctggtggATTCCGCCTCTGCTTTTCTCATCGCTCGTGCTCCGGTGGGCACACTGTCATCCCGCATTGGCTGAGGGGGATAAATCGGAGAATCATGATCGGCCTATCGGTGACAGACACCGGCGAGCGGCTGAAGAGTCCTACTGGGCCTATTCAGGGACGTACGGACCAGATACAGGCTGGGCGGCAGCTTTTCCTGAGTGCCAGGAGAGAAACCAATCGCCAATCAATATAGCCGACCAAGACACTAAGGTCTCGATGGAGTACCAGGAGCTCACATTGGACGGGTTTGATGCGGAGTCGTCCAACAAAACGTCAATGAAGAACACAGGCAAAACGGTGGCGATCTTTCTGAAGGACGATTATTTCGTGAGAGGAGCCGGGCTACCGGGCCGTTTCAAAGCCGAGAAGGTGGAGTTCCACTGGGGCCAGAGCAATGGTTCCGACGGCTCGGAGCACAGCATCAATGGCAGGAGATTCCCTGTGGAGATGCAGATCTTCATGTATAACTCGGATGACTTTGACAGCCTTAACACAGCCATACGGGAGAAGCGAGTAATTGCGGCCATGGCTGTCTTCTTTCAGGTTGATTTCAAGGACAATCCTGCAGTAGATCCCATCATTCATGGTCTAAGAGGAGTGGTGCATCATGaGAAAGAGACTTTTCTAGAGCCCTTTGTGCTGAGAGACCTGCTGCCGTCCTCCATCGGGAGCTACTACCGCTACATCGGCTCTCTGACCACACCACCCTGCAGTAAAGTGGTGGAATGGATCGTCTTCAGCCGGCCCGTGCTCCTCTCATACAAACAGctGGAGGCGTTCTACTCCATCTTCACCACGGAGCAGCAGGATCATGTTAAATCTGTGGAATACCTACGTAACAACTTCCGGCCACTCCAGAGTCTGGACAACCGAGAGGTCTTCAAATCCGCTGTCAAAGACGCGTGGCTGCCTGATTTGACTTACCCCCCGGGGAACCCGTACGGTACCGAGGCTTCTAAAGCATGCAGCAGTGCGCCCATCAACATGAACGTCCAGCACATGAATAAGACTGCACTGGTCGTCCGATGGTCCCGGCCAGAGATCACCTACGATCCGCCCATCATCAGCTACCTCATTTCCTACAGCTGGACCAGAAACGATGAGTCATACGAGGAGACTTATTTCAAAGGGAGCGATCAGAAACTGgaggcgGTTATCACGCCGGTGTCGCCGGATGTTCTGTACCTGTTTCGTGTGCAGGCGGTGTGTTTGAATGACAAGCGCAGTGACTTCAGTCAGAGTATGCTCTTCAGAGCCAACACCACCAGAATATTTGAGGGAACGAGGATAGTAAAAACTGGGATGCCAACAGTTTCTCCTGCATCGTCAGCAGACATGGCCCCCATCAGCTCCGGCTCCTCCACATGGACCTCCTCCGGTCTTCCCTTCTCCTTTGTTTCGATGGCCACCGGAATCGGCCCATCCTCCAGTGGCAGCCAGGCCACCGTGGCATCCGTGGTGACCAGTACACTCCTGGCAGGACTGGGCTTCAGCGGAGGCGTCATCTCCTCCTTCCCTAGCTCCGTGTGGCCCACCAGACCACCACCCTCCAGCCCTGCTCCAGCCTCCACCCACCAGAGCCCAGCCAAACCTGTGGTGACCACTGCAGAACAGGCCTCTGACGCAGACACCACCACAGCCACTGACAACGACAGGTCTGATGACGGAGGAGAGAAGGGCGGGAAGGGTGAGGATGAGGATGGAGAAAAGAacggagaagaagaagaagatgaggaTGAGGAAAAAGGTGGAGAGAGTAAAGACAGCAGAGCTCCTGACGATGTGGAAAAGCAGACCAACAGCTCCGTCTCCAAAGATCCTCCAACAGCAGTACCCGATTCCACAGCCAAAGAGAAAGGAGGACGCAGGAGAACAGAAAACAGCACAGCGCCATCTAGAGTCTCTGAGGAAAACACACAGGGACTGGGAGAAGAGAACACGCAGGTGATGGCGAGCAGAGAGCCGGAGGTGGAGGAGAACGTGACGGCAGTGATAGAGACTCCAGAAAACACAGAGCAGAGCAGTAAAGACAACAGAGGAGACCGCAATCACCTGCCTCCTTTCTCCATACACACAGagcGCACTGTCGTCTCCAGCATGTACCCTGGGCCTGCTGCCGGACGGATGGAGTGGATTATTCCTCTGGTGGTGGTGTCGGCGCTCACTTTCCTCTGCCTGATTCTGCTGCTGGCCGTCCTGGTTTACTGGAGGAGGTGTTTCCAGACGGCTCATTTCTACGTGGAGGACAGCAACTCGCCCAGAGTCGTGCCCAATGAGAGCATTCCAGTAATCCCCATCCCAGATGATATGGAGGCCATCCCTGTGAAACATTTCATTAAGCATGTATCAGAGCTCTACTCCAACAACCAGCATGGCTTCTCAGATGATTTTGAGGAAGTACAGCGCTGCACAGCTGATATGAAGATTACAGCAGAACACTCCAATCATCCAGACAACAAGCACAAAAACAGATACATCAACATCATCGCCTATGACCACAGTCGAGTAAAGCTCAGGCCTCTGGCAGGCAAAGACTCCAAACACAGTGACTACATCAATGCCAACTATGTGGATGGCTATAATAAACCCAAGGCCTACATCGCAGCTCAGGGCCCTCTCAAGTCCACGTTCGAGGACTTCTGGCGGATGGTGTGGGAGCAGAACACTGGCATTATAGTCATGATCACTAACCTTGTGGAGAAAGGCAGAAGAAAATGTGACCAGTACTGGCCGTCAGAGAACAGTGAGGAGTATGGGAATATTGTGGTGACGCTGAAGAGAACCAAAGTAATGGCGTGCTACACACTCCGCATCTTCACTATCAGAAACACCAAAGTAAAGAAGgGTCAAAAGGGGAACACTAAGGGCCGTCAGAGTGAGAGAACGGTTCTGCAGTATCACTACACCCAGTGGCCGGACATGGGTGTCCCAGAATACACTTTACCCGTGCTCACATTCGTCAGGAAGTCTTCTGCCGCACAGACCCCAGACATGGGCCCCATGCTTGTACACTGCAGtgcCGGTGTGGGAAGAACAGGAACATACATTGTGATTGACAGCATGCTACAGCAGCTAAAGGATAAAGGCGCTGTCAATGTGCTCGGCTTCCTCAAACATATACGAACTCAGAGAAACTACCTGGTCCAAACGGAGGAGCAGTATATCTTCATCCACGATGCCTTGATGGAAGCCATTCTTGGGAAAGAAACAGAGGTGCCCTCGAGTCAGCTGCACAGTTACGTCAACAGCATCCTGACGCCGGGCCCAGGGGGCAAAACACGACTAGAGAAGCAGTTCAAGTTGGTGACTCAGTGCAATGCAAGATTTGTCGAGTGTTTCAGTGCTCAGAAAGACTGCAACAAGGAGAAGAACCGCAACTCTTCTGTTGTACCATCGGAAAGAGCACGTGTTGGTCTCGCACCGTTGCCTGGGATGAAGGGCACTGATTACATCAATGCATCTTACATAATGGGCTACTACCGCAGCAATGAGTTCATCATTACCCAGCATCCCCTGCCTCACACCACTAAAGATTTCTGGAGGATGATCTGGGACCACAACGCTCAAATCATCGTCATGTTACCAGACAACCAGGGCCTGGCGGAGGATGAGTTCGTGTATTGGCCGAGTCGAGAGGAAGCCATGAACTGTGAGGCGTTTACAGTCACTCTTATCAGTAAAGACAGACTCTGTCTCTCCAATGAGGAACAGATCATCATTCATGACTTCATCCTGGAGGCCACACAGGATGATTACGTTTTAGAAGTTCGTCATTTTCAGTGCCCAAAATGGCCAAACCCCGACGCACCCATTAGCAGCACTTTTGAGCTCATCAACGTCATCAAAGAAGAGGCCATGACCAGAGATGGACCCACTATAGTGCATGATGAgtttgGTGCAGTGTCTGCTGGGATGTTTTGTGCTCTCACCACACTGTCCCAGCAGCTGGAGAGTGAAGGAGCTGCAGGCGTCTATCAGGTGGCCAAGATGATCAACCTCATGAGACCAGGAGTCTTTACCGACATTGAACAGTACCAGTACCTTTACAAAGCTATGCTCAGCCTGATAAGCACTAAAGAGAACGGATCCAGCCCCATGTCCCTGGACAGAAACGGCAGTATGGCCATGTCTGACGAATCAGACCCCGCCGAAAGCTTGGAGTCCCTCGTTTGA

Function

symbol description
ptprga Predicted to enable protein tyrosine phosphatase activity. Predicted to be involved in protein dephosphorylation. Predicted to act upstream of or within dephosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human PTPRG (protein tyrosine phosphatase receptor type G).

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0016311 dephosphorylation biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-101101-4 Predicted to enable protein tyrosine phosphatase activity. Predicted to be involved in protein dephosphorylation. Predicted to act upstream of or within dephosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human PTPRG (protein tyrosine phosphatase receptor type G).

Ensembl:

ensembl_id ENSDARG00000045006

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006258 True 4245 mRNA 0.53 30 4953964 5463254

Neighbor

gene id symbol gene type direction distance location
XLOC_003173 camk1b coding upstream 821302 4026229 ~ 4132662 (+)
XLOC_003172 spcs1 coding upstream 960226 3989403 ~ 3993738 (+)
XLOC_003171 gnl3 coding upstream 982929 3959495 ~ 3971035 (+)
XLOC_003170 NA coding upstream 1170839 3771266 ~ 3783125 (+)
XLOC_003169 NA coding upstream 1218161 3615750 ~ 3735803 (+)
XLOC_003175 cse1l coding downstream 5375 5468629 ~ 5493191 (+)
XLOC_003176 CR559931.1 coding downstream 18499 5481753 ~ 5481884 (+)
XLOC_003177 slc35e1 coding downstream 36407 5499661 ~ 5515922 (+)
XLOC_003178 CU855733.1 coding downstream 68189 5531443 ~ 5531576 (+)
XLOC_003179 APBA3 coding downstream 101828 5565082 ~ 5659681 (+)
XLOC_003250 BX324177.11 misc downstream 5882549 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 5909632 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 5923108 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 5954779 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 5966139 11429393 ~ 11429689 (+)
XLOC_003164 NA non-coding upstream 1620250 3331113 ~ 3333714 (+)
XLOC_003160 NA non-coding upstream 1747266 3203487 ~ 3206698 (+)
XLOC_003159 dre-mir-724 non-coding upstream 1777194 3176686 ~ 3176770 (+)
XLOC_003180 NA non-coding downstream 139086 5602340 ~ 5602721 (+)
XLOC_003187 NA non-coding downstream 492011 5955265 ~ 5966389 (+)
XLOC_003189 CT573239.2 non-coding downstream 606621 6069875 ~ 6074783 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000057_03496993_03600733 PTPRG, PTPRGA coding CI01000057 null 3496993 ~ 3600733 (+)
bowfin (Amia calva) AMCG00006470 NA coding CM030134.1 CM030134.1 5350204 ~ 5390268 (-)