XLOC_003175 (cse1l)


Basic Information

Item Value
gene id XLOC_003175
gene name cse1l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 5468629 ~ 5493191 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006259
AGTCCCCATAACACACACAAGATGGCGGTATATAACATCTGCGCCACCATCCACTGCTTGTGCTGCATTAGGGCGCATGTGCGGAGTCGTGACCGCGCACTTGTGTGAGACGTTTGAAAGTTCTCGCCGGTGATTAGCACAGCACTGCAACCTACAGCTAACGCAATCATGGAGCTCAATGATGGAAATCTCCAAACCCTTACCGAGTACTTGCAGAAAACACTAAGCGCTGATCCAGCTGTGAGGAGGCCAGCCGAGAAGTTTCTGGAGTCGGTGGAGGGAAACCAGAACTATCCCATTTTACTGCTCGCAGTACTGGAAAAGTCCCAGAATGAGGTCATCCGTGTGTGTTCAGCCGTCACTTTCAAGAACTACATCAAGAGGAACTGGCGCATAGTTGAGGATGAACCCAACAAAATCTCTGATCCTGATCGGACTGCTATTAAGGCCAACATTGTAAATTTGATGTTGACCAGCCCGGAGCAAATCCAAAAACAGCTGAGTGACGCTATCAGCATTATCGGGCGGGAAGACTTCCCTTTGAAATGGCCAGATCTCTTGACTGAGATGGTGAACCGTTTTCAGAGTGGAGACTTCCACATCATTAATGGTGTTCTTCGCACGGCACATTCCCTTTTTAAACGATACCGGCATGAGTTTAAGTCTAATGAGCTGTGGTCAGAGATCAAGCTGGTACTGGACACGTTTGCACAGCCTCTTACTGAACTTTTTAAGGCTACAATTGAATTGTGTCAAACACATGCAACAGATATCAACGCCTTGAAAGTGCTCTTCTCTTCTCTAACACTTATTTCAAAACTTTTCTACAGCCTTAACTTCCAGGATCTCCCTGAGTTCTTTGAGGATAACATGGAGACTTGGATGACAAATTTTCACAACTTGTTGACCCTGGACAACAAGCTGTTGCAAACAGATgATGAGGAGGAGGCTGGTCTGCTGGAGCTGTTGAAGTCTCAAATCTGTGATAACGCAGCACTTTATGCTCAAAAATATGATGAAGAGTTCCAGCCCTACTTGCCTCGCTTTGTTACAGCTATTTGGAATCTGCTGGTCACAACTGGTCAAGAGGTCAAATATGATTTGCTTGTGAGCAATGCAATCCAGTTTTTGGCATCTGTGTGTGAGCGACCACACTATAAGCATCTCTTTGAGGACCAGAATGTTCTCACCAGCATCTGTGAGAAGGTCATCGTACCCAACATGGAGTTCAGAAGTGCAGATGAAGAGGCTTTTGAAGATAACTCAGAGGAGTACATCATCAGAGATCTTGAAGGCTCAGACATCGACACAAGACGCAGAGCAGCCTGTGATTTGGTGCGAGGCCTTTGTAAGTTTTTCGAGGGCCCGGTGACGGGTATCTTCTCTGGATATGTGAACTCAATGTTGGCAGAGTACGCCAAAAACCCTGGTGTGAACTGGAAGCACAAAGATGCCGCCATCTACTTGGTTACATCTCTAGCATCCAAAGCTCAGACACAAAAGCATGGAATAACACAAGCAAATGAGCTGGTGAACCTGTCAGAGTTCTTTTTAAACCATATTCTCATAGATCTGAAATCCCCTAACGTGAACGAGTTTCCAGTTTTAAAATCAGACGCCATCAAGTATGTTATGACCTTCAGAAGTCAACTTCCTAAAGAGCAGCTGTTGCAGGCCGTTCCTCTACTCGTGTCCCACCTGCAGGCGGAGAGCATTGTTCAGCACACCTATGCTGCACATGCACTTGAGAGACTCTTCACCATGAGAGGAGGCAACAACACCACCCTCATCACCCCGACTGAAATGGCACCCTTCACAGAACAGTTACTCAACCATTTGTTTAAAGCTTTAGCAATTCCTGGATCATCTGAGAACGAGTACATTATGAAAGCCATCATGAGGAGTTTCTCCCTCTTGCAGGAAGCCATCGTGCCCTACATTCCCACTCTCATTGGCCAACTCACACACAAGCTCCTCCTCGTCAGCAAGAATCCCAGTAAACCACATTTCAACCATTACCTGTTTGAGTCGCTGTGCCTGTCCATCAGGATCACCTGCAAGGCCAATCCAGACACCGTGAGCAGCTTTGAAGAAGCCCTGTTTCCTGTGTTTACAGAGATCCTCCAGAATGACGTGCAGGAGTTCGTGCCGTATGTCTTCCAGGTGATGTCTCTACTTCTGGAGATCCACAGCAACTCAATCCCCTCCTCCTACATGGCTCTGTTTCCTCATCTCCTGCAGCCTGTGCTGTGGGAGCGTACAGGAAACATCCCTCCGCTTGTGCGTCTGCTGCAGGCCTACCTGGAGAAAGGAGCTGCCGCCATCGCCAACACAGCCTCTGACAAGATACCTGGTCTTCTTGGAGTGTTTCAGAAACTCATCGCATCCAAAGCTAATGACCATCAAGGCTTTTATCTGCTCAACAGTATAGTGGAGCACATGCCTGCGGAAGCGATCACGCAGTATAGGAAACAGATCTTTATTCTGCTCTTCCAGAGGCTTCAGAGCTCCAAGACCACGAAATTCGTTAAAAGTTTCCTCGTCTTCATCAACCTTTATTCTGTGAAATATGGCGCCATTGCATTGCAGGAGATATTTGATGATATCCAGCCAAAGATGTTTGGGATGGTTGTGGAGAAGATTGTGATTCCTGAGGTGCAGAAGGTGTCAGGGCAGGTGGAGAAGAAGATCTGTGCTGTGGGAATCATCAAGATCCTCACCGAGTGTCCCGCCATGATGGACACCGAGTACACCAAACTCTGggcTCCTTTGCTGcaggctctgattggtttatttgaGTTGCCAGAAGATGACAGCATCCCAGATGATGAGCACTTCATTGACATCGAGGACACTCCAGGATACCAGACCGCTTTCTCCCAGCTTGCTTTTGCAGGCAAGAAAGAGCACGACCCCATCGGCGACGCCGTCAGCAATCCCAAAATCCTCCTGGCTCAGTCCTTACACAAACTCTCCACCGCCTGTCCCGGAAGAGTTCCCTCCATGTTGAGCACCAGTCTGCCCACTGAAGCTCTTCAGTTCCTGCAGGGTTACCTTCAGGCGGCCACTGTACAGCTGGTGTAGCCACACACTCctttacagacaaaaaaaaaatggggaCCTCCGACACTCAAGACTCCCAAATTGATCTGACCCAAGAAGAGGCGAGCTGTGGACTCAACAAGAGCAGAGATGTGCTGCCCAGTGACGCGCGGCCACACAGAACGGCTTTTAGGGGTCGTTTTAATGCGTTATGGGAGTGATGGTCTCTGATCGTCTCACTGGGTGTCTAATGTTTGCTTTTTCCTTTGTGTTAGCTGGAGTCCATTCAACGTGTTCTCTTAAGTTCGGCGTCTCGTCCAATCACACATTTGGCAGTATTTTGAAATGTCGCCTTTTACAAACGTTAAACAGCACCGGGGTGTTGGCAAACATCGTGTGGCATCTTTAAAAGCATTGGAGAAATGTTTTTCTGTTCCTTTCCTGTCGTTTTGGAgaagtttttactgtataaacGAGTTGTTCTGCAGAGGAACTGAACTCGTCTGTCTCTCGTTGCATGTCATTCATCATGTTTTGTCTTCATTACGTCTTAGTTTTGCTGCTCtagttgttaataaataaatgaagcactTGTTTAAGATGGTGGTCACGTTTGTTTTGCTTCCAgatcgcgggggcacttttgatcattttggaagggcactttctatccaagactaaaaagggcatgtgcactgcacaggttgaggcctttgtgtgcacgtgcctgagagagtacaaaatcatttgtctctctgtatagttttacagccaactgtttGCTAGTTTCAAGCGCTGAGCTTGTACACAGAGACTAATAACAACACatactgaattaactttgactgaggaaCCGGCTGTGCCGCTCGAAGctgcgacacggcacaccagacactgtGGCGAGGCAGAAACAtaaagtgtcccgaatcgtcgcaCCACTCAGTGCcatgcattccagaactccaaacaacGGACTCCACCAGGGCAGACACAACGGCTACCTGCAGCGCCCAGCCGCCGACCCGAAGTGCCATCGCGTGCACCCcaacagaaacccacgcccagaactccgaaatgcacggCGCCACGCAGAGAGACGCGTCTGCTGtacgacctgcaggcaagtttgttattttatttccatggAGAGATGCGCACATGAGGCAACACGCTCACACTTTCCAGCTGCACTTAGTTGAGATCTGAGGGAGCTTCTGTGTTcatgagaaatgcaaacggcttaAGTTTAAGGTAGATGCAataaagtacacatgtttgcaaacctacgaAAAGGTATAAATAATTCTGATCAGCAATTTATGTGGAGTATATTGATcgtgtgttgagcccaatgagccttgcatctaaaataaagcaaaggtgttcctttagtgatttTGCTTTGattcacacgctgaaaatggcgccCATAAAACGACAAACTAAGGATATGGGgacgcgcctgtcaatcaatattggtgggcgggggaactgcactcctacgtcaagttgtggtcgctctgaaaaccgctccaattggtccattTTTGTAgtgttaaattggaaaaaaaaagggccgtgtgtttatatcaccccaatatgacggtctatacactatacatgcatgtctgtccaaacagcttgaaaagtagatttttcaccataggtgccctttaaccctatatagtgcatctggaaagtattcatagggcttcactttttctacatttctttgttacagcctttttcaaaaattgattaaattaatttatttcctcaacattctacaaacaataccccataatgacaatgtaaaacagtttttgaaattgttagaaatttattaaaaataaaaacgctgaaaaatcagatgtacatcagtatttacagcctttgccgtgaaacTCTAAATCGAGCTCAGGTacgttctgtttccactgatcattcttgagatgtttcagcagcttcattggagttcacctgtggtcaattcagttgattggacatgatttgaaaaggcatacacctgtctatatacgGTCCCAGGGTTGACCTTGCAAGTCAaagcacaaactaagcatgaagacaaaggaattgtctgtagacctccgaaacaggattgtctcaaaaaacaaggctggggaaggttacagaaacatttctgctgctctgaaagttccaatgagcacagcggcctccatccaTAAgttgaagatgtttggaaccaccaggacttttcctagagctggctggccatctaagctgagggatcggggagaagggccttagtcagggaggtgatcaataacccaatggtcactctgtctgagctccagcgttcttctgtagagagagaagaactttacagaaggacaaccatctgtgcagcaatccaccaatcaggcctgtatggtagagtagcCAGACAGAAGCTAccccccgcctggaatttgccaaaaggcacctAAAGGACTCTTGGATCATAAgtaactaaattctctggtctgatgagactaaaattgaactctttagagtgaatgctaacggtctaatctgattcaattcattatgctaagctaaaagtgaccccGCCAGAGCAAGAAATggctgaatggataaaaaaaaaaacatttcaagtcAGCTGTTCAACTCTAGGAGACTTGTAAAGAGAGCCTTGAAAAAGGTGCAGTGTttctttaaatcatgtttaaaagcCCATCTTGCACCTGCTGAAACCATTTAAGTCATTTGCATTCATATGTGGACACGGAGAGTTGAGCTCAAACGGGACTGGCTGTAGTAGTTTCATATCGACGATGCAGGTTTAAAAAGGGCTTTGCATATTGTTTGTGTTCTCATGCTGTTGTACATTTATTAGTGGACGTCgtttttaaaagtgtcattttctGACAATGAAAAGAGCTTCAAGTATCCAACAGCTCAAAGAGCAGCTCATGCAGGCCGTCGATGCTCAAAACAATGTGAGTAAGAGCTGAGTAATGCAATGGGAAGTCCTTCTAAATGCATGTCGTTTATGCTAAATGTGTTCttgattgttatttttttttatgaaagtttTGTCTTAAAGTTTTGTCATTTGTAAGCATGactgtttttattcctttaattaatTCAGGTAAATTAAAGGACAAAAGTTCCTCACTACAGTATTTCAAATTGGTTGTTTCATTGAAAAGGAAAGATTggctggttttattttatttttacatgtatgTTGACTGTTGGTTTGCTCAATCTGTTGtgggatttattttttaaagcaagtTTTATAGACATTATTTCACAGAGTTTTACAGGAATGAGCGTGCAAGCAGATTTGCATTTGAAACCACAAATGATGACTGAAAGTGTGACTGCTCCAGGTGCACATATGAGAAAATATATGAGAACGTTCATGTCTGAAAAAGACACAGAAACTGACCTCAGTGTATAGAGGAAAATAGCAGTAAATGTAGATGATGTAGACTGAAAGTCTGAAGTGACATGAACTTAACCTTTACCTGTCAGCAGATACAGAACATGGTGGCTGTGTTGGATGTGATATGCTGTCTGGAAAGTTACCCCATGACTAAAGAGACTCTAGAG
>TCONS_00008382
AAAAGACTATTTTGTGACAGTTTTGTTGGATTAATTGTGTCCGGGAACATTGCTTTTGTAGCTTGTGAGCAATGCAATCCAGTTTTTGGCATCTGTGTGTGAGCGACCACACTATAAGCATCTCTTTGAGGACCAGAATGTTCTCACCAGCATCTGTGAGAAGGTCATCGTACCCAACATGGAGTTCAGAAGTGCAGATGAAGAGGCTTTTGAAGATAACTCAGAGGAGTACATCATCAGAGATCTTGAAGGCTCAGGTTTGTTGACACTTCTCTGTATTGTTCAGACGCTTGGTTTTTGTGATGTTTGTACTGAATGGTCTCTTCTGTTCTCAAAGACATCGACACAAGACGCAGAGCAGCCTGTGATTTGGTGCGAGGCCTTTGTAAGTTTTTCGAGGGCCCGGTGACGGGTATCTTCTCTGGATATGTGAACTCAATGTTGGCAGAGTACGCCAAAAACCCTGGTGTGAACTGGAAGCACAAAGATGCCGCCATCTACTTGGTTACATCTCTAGCATCCAAAGCTCAGACACAAAAGGTGAGATGGTCTTTGTTGATGATAACTCCGTAAGCAGAGTACTGATTTCGTTTCACTTTACTATGAACTCTTTCAACTCTTTAAATGAActcattttaaagcatttttaaatatatttattatctattttaaTGTTAACATAAATCTGCAGTAAGAAAATGATTAAACTAAATCTCAATTtttacaccaaaaaaaaa
>TCONS_00008383
ATTTTGGTTTTATTCATTTACAGCTCACCCTTATTAGGACTCATATTGACTGTTTGTTAGTGCTCGCAGCACATCAATGCCTCAATCTGCTTGACCCTATATTAGATCTCCGTTTACAGCATaccttttgttattgttttttgttttctgattGTTGCTTTTGGTCTGCATTTCAGGATGTTTGGGATGGTTGTGGAGAAGATTGTGATTCCTGAGGTGCAGAAGGTGTCAGGGCAGGTGGAGAAGAAGATCTGTGCTGTGGGAATCATCAAGATCCTCACCGAGTGTCCCGCCATGATGGACACCGAGTACACCAAACTCTGggcTCCTTTGCTGcaggctctgattggtttatttgaGTTGCCAGAAGATGACAGCATCCCAGATGATGAGCACTTCATTGACATCGAGGACACTCCAGGATACCAGACCGCTTTCTCCCAGCTTGCTTTTGCAGGCAAGAAAGAGCACGACCCCATCGGCGACGCCGTCAGCAATCCCAAAATCCTCCTGGCTCAGTCCTTACACAAACTCTCCACCGCCTGTCCCGGAAGAGTTCCCTCCATGTTGAGCACCAGTCTGCCCACTGAAGCTCTTCAGTTCCTGCAGGGTTACCTTCAGGCGGCCACTGTACAGCTGGTGTAGCCACACACTCctttacagacaaaaaaaaaatggggaCCTCCGACACTCAAGACTCCCAAATTGATCTGACCCAAGAAGAGG

Function

symbol description
cse1l Predicted to enable nuclear export signal receptor activity. Acts upstream of or within body fluid secretion. Predicted to be located in several cellular components, including apical plasma membrane; basal plasma membrane; and lateral plasma membrane. Predicted to be active in cytosol and nuclear envelope. Is expressed in brain; digestive system; endoderm; and retina. Orthologous to human CSE1L (chromosome segregation 1 like).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006606 protein import into nucleus biological_process
GO:0006611 protein export from nucleus biological_process
GO:0007589 body fluid secretion biological_process
GO:0015031 protein transport biological_process
GO:0005829 cytosol cellular_component
GO:0005886 plasma membrane cellular_component
GO:0009925 basal plasma membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0005635 nuclear envelope cellular_component
GO:0016020 membrane cellular_component
GO:0016324 apical plasma membrane cellular_component
GO:0016328 lateral plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005049 nuclear export signal receptor activity molecular_function
GO:0005515 protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990603-1 Predicted to enable nuclear export signal receptor activity. Acts upstream of or within body fluid secretion. Predicted to be located in several cellular components, including apical plasma membrane; basal plasma membrane; and lateral plasma membrane. Predicted to be active in cytosol and nuclear envelope. Is expressed in brain; digestive system; endoderm; and retina. Orthologous to human CSE1L (chromosome segregation 1 like).

Ensembl:

ensembl_id ENSDARG00000006963

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006259 False 6648 mRNA 0.45 25 5468629 5493191
TCONS_00008382 False 737 lncRNA 0.39 2 5476848 5477683
TCONS_00008383 True 726 lncRNA 0.48 3 5486647 5489708

Neighbor

gene id symbol gene type direction distance location
XLOC_003174 ptprga coding upstream 5375 4953964 ~ 5463254 (+)
XLOC_003173 camk1b coding upstream 1335967 4026229 ~ 4132662 (+)
XLOC_003172 spcs1 coding upstream 1474891 3989403 ~ 3993738 (+)
XLOC_003171 gnl3 coding upstream 1497594 3959495 ~ 3971035 (+)
XLOC_003170 NA coding upstream 1685504 3771266 ~ 3783125 (+)
XLOC_003177 slc35e1 coding downstream 6470 5499661 ~ 5515922 (+)
XLOC_003178 CU855733.1 coding downstream 38252 5531443 ~ 5531576 (+)
XLOC_003179 APBA3 coding downstream 71891 5565082 ~ 5659681 (+)
XLOC_003180 NA coding downstream 109149 5602340 ~ 5602721 (+)
XLOC_003181 r3hdm4 coding downstream 173134 5666325 ~ 5674923 (+)
XLOC_003250 BX324177.11 misc downstream 5852612 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 5879695 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 5893171 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 5924842 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 5936202 11429393 ~ 11429689 (+)
XLOC_003169 NA non-coding upstream 1732826 3615750 ~ 3735803 (+)
XLOC_003164 NA non-coding upstream 2134915 3331113 ~ 3333714 (+)
XLOC_003160 NA non-coding upstream 2261931 3203487 ~ 3206698 (+)
XLOC_003159 dre-mir-724 non-coding upstream 2291859 3176686 ~ 3176770 (+)
XLOC_003187 NA non-coding downstream 462074 5955265 ~ 5966389 (+)
XLOC_003189 CT573239.2 non-coding downstream 576684 6069875 ~ 6074783 (+)
XLOC_003195 BX248501.1 non-coding downstream 712778 6205969 ~ 6224120 (+)

Expression


Co-expression Network