XLOC_031770 (LO018168.1)


Basic Information

Item Value
gene id XLOC_031770
gene name LO018168.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 2519973 ~ 2593500 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062238
GGTGCGTGTGGAGACTCACAGCAGCTTCAGCATGCGGTCAGAGATGATGAAAACACACGAGCGGCGGCTCCAGACTCTGCCAGCGAGTCTCTCTCTGAAACCTCAGACAGTGGATTGGTGAAGCAGAGCGATGTGGAGGATCCTCCAGCTCACCTGCAGACggccagcagcactgaacacaccACTCCTCCAAAAACACCCTCTGCTGCCAGCCTGGCCGAGTCTGTGCAGTCCAACACACACAGCAGTGGGAAGCTGCGGCCCAGTCGAGTTCAGAGTGTGGTGTCCAGTCAGGGCAGCCTGGACTCAGACATGCTGGGTGAGACTCCACTGATTATGCGCACACTCGCTCACGCACTCATCTGTCCTCCTGCATCAACTCTCctcctgcatgtgtgtgtttttcaggttACGACGGTGGCAGCAGCGACTCGGAGTGTGAAGGACCCACGATGAACGAGCAGGAGAAGCAGACGCCGCTCATGCCTGATTTCTGGCTCATCATCAGGATCCATCAGGACCGGGTGCAGGTTTTCTCTCACTCCagGAGTTTGCATCGAGGgaaagaggaggaagaggaggaggagatcCCCGAATACCTGCGCCTTCATCAGCTGGTGGTGCGCAGGATTGGAGAAATGTGCCGAATAGTCAACCAGCGCCTCCTGCTGCAGGATCTGCATGACAGTCGTGTGTGCCACTCTCTCCTGGTGGCGGAGAGTGAGGAGGACATCTGGAAACATGAGTCGCTCTACCGGCCCCGGATGACCCACTCTGATGaCTATAATGCTGACGAGAGCTATCAGCGGCGGGATTACCTCGCCGCCACCATGCACTTCATACCGGGTTACTTCGCCTGTGACGTGGTGTGGAGCACCGTTATTTACATCCACCCGCGGCTCAAGATGGGGCCCAACATGGGTGTGTCCCGCGCTATGCAGGCTCTGCACTCCGTTCTCAACGCTTTCTGTGTGGTGAACCGCAAAAACATGTTTGTCTATCAGGAGCGCACCACTAAATCTGTGTTCTACCTCCGGCTCTCCGAGACGTCTCAGGCAGGGAAGTACAGTGATTTGGATGGAAACGTGCACATGTCGCGCTCTGTCGGTCTGGCTCGCAGCCAGGAGCCGCTAGGCTCAGAGGACCTCACGGGATCGCGCTCGTCTCTGGAAGGCTCGAGGCCAGTTGGACTGGTGGACAAACACATTCTGCTGCTAGTTCATGGTGTAGGAACTGCAGGTCCAGAGATCTCGGATGAGCTGATGAAGCTCTTGAGGAAGCGTCTGGATGAAGCCACACTGGACATTATTACAGTCATGCTGGTCAGAAACTGCAAACTGACCCCTGCAGATGTGGAGTTTATCCAGCCTCCCGGGTCTCCAGCGACGGAGGTGATGGAGTTCTGTCTGCCTCAGTACTGTGGGCCGTGGATCCAGGCGGTGGCTCACTATCTCCGGCAGAACCTGCTCATTTTTCTCCACATCCCCAAATACACTGACAGCAACATCGAGCACCACTTTAAGCATTATTTCCATTCAAGTAGCGAGCTGCCCGATCATGACATCTACCTGTACAATAAACCTGGAGGACAGGGCACCGGAGGCAAAGGTATCGTCTGCATCGTGCTGTCGTTCGTGGATGATAAAGGCTGTGCGCTGTTGCTTACTGCTCAGGACGCCAGTGTTTCGGCTGTAAGAGGAGATGCCACCGCCATTTCCATCCAGCCGGACCAGTTTGAGACCTTGACAACCGTTGTCAAGGTGGACTCTCGCAACCAGAGCTCAGGTGTTCGCGTGCGCTTTGACGTGTGGGAGCAGGGGAACATCGATCCTCTACAGCTGGCAAACAGACTGAAAGCTGCTCTACGCCACGCTCTCTGTGATGTTATTATGGAGATGCGTGTACTGCCCAGTCCACTGTGTCTGGACACCTTCTGCCTGCCCACTGCCACCCCGCGGGAGGAGAGCTCAGTTCCCTTAAGTCTTGTGCCGTCAGACAGTAAGGAGCAGAAGAAGACTCCTCGGCGTCCCAGCACAGATCAAGCTCTCAGAAGCAGCCCGTCTCCCATCAGCCTGATCTCTGCACCCGCTTCCACCCCGACCACAGGAACCAGCACTCCCGAATCCACAACACCCACCGGGAAAAGCACTCGCCGCAGCTTCTGGGAGATGCTGAGCAAACCAGAGACTTCTGAAATTGGCAGTCCGAAGACAACGGATGATATTATACCGGAGCGAGCGGAGGATAGTCGGATGGGAAGACGCAGACACAAGACGGAGAACGTCAAACAGTGGAGCCATGAGAAAGCCATGGCTGTGGAACAAGAGCAGGCtcagagGAGACGTGCGGTTCAGTTGGAGGAAGGAGATACGGGGACTCTTCAGCCTGTTTACCAGACCACATACATGCCCTGGGTCATGTTCATGAATAAACTGGGTTGTCCGTCCATCCAGCACTGTTCAGCTGAAGTCTCGCATCACTTCCTCCTGCCCTCCGTCCTCACAGAGTTGGTCAATCTGGTCACTTCTCTGGCCAGTGACACCACAGTCAAAGTATTCGAAAGAAGCAGCTGCCCTCAGGGAGATATTTACATACCTCTGTCAATCATCCAGCACATCAGCCAATCACCTGCCACCACCAGGAGCTTCATTCTCATTGGTCGCAACTTCAGCCAGTGGCATTGCAGTACTGAGCAAGAAGACAGTTCAGATGAAGAGAACAGTCCAGTACTAAATAGGTGCACACCTCATAAAGGCCTGCAGCGGTTCGAGGCTTTGGAGCACAGTGATTGGCTGAGCCCGGGTCAGGCTGTGAGGGGCGTGGCTCCACGACAGCGTTTCCTGTTCATTCACATCGTCAACAAGAAGGTGACTCTGTACACGTATAACTGGTCAGTGGATCTGGGCGGCTCTCTGAATCAGGCTCTGGTTAGGCTGGTGCAGTGGCAGAACGCTCGCGCACACGTGGTCAACTGCCTCCTGGGTCAGAAAATGGGCCTTTTCCATCATTACTGCTTCTCTGATACGCCTACACACGAGGAGCTGAAGCAGGAGCAAAACCCATTCCTGAACTCCACGATGGAGGCAGACGCTCTATTAAGGAGTCCGGTTCCTCCGGCCGCCAGTAAGGATCCGGGTCGACTAGGCAGCTCTGCGCGTGTTCTTCCTCCTCTGCCATTTCCTGGTGAACTCGTGCCCTTTGATGAAGCTCTGAGAGACGTCAACACTAACAGACCCCTGAGCAGTCAGGACGGGGCTGATATAGTGGCTCGACACGGAGCCCAGCTGCTGGAGGTCAAAGCAGCTGAACGCAgagAGTTGGAGAGACAGATGAAGATCGAGAATCTGTTTGTGACGTGGCAGCAGCGCTCGGCTCAGTCCAACATGCCCATATCGgtggCAGATCTGGACACTCTAAAGCAATCCTCTAGACTGGTTCATTACTGCGCCACACCACTGCTCTTTGACCCTGTGTTCAGAAAACAGATTCAGGAGGAACAGGTGCCACAGCCACAGATGAAGAAGCGTCATCGCTCCAGTGACTCGACAGCCTCGGGCCGGGACCGCAGCTACAGCACAGACTCTGCAGAGATGCTGCCGAGCCGGCTGAAGGAGGAGCCGTGGCTGCAGGACATCTCCAACACCTTCCTGCAGCAGTACGTGCAGTATCTGCAGAGCATGGGCTTCATCCTGGTGCAGGTCCGGCCGCAGTCGCCAGCACGCAGCATCGCTCGAGCTCGCGCCGCCATGTTGAGCTCTCTGTCCACTGAAGGCAGATCTTCATTCTCATCGTTCTCATATAATAAGCAGAAGAGTGAAGACAGCAGCCCTAAGcagagCAGTTCGTCAGGCTCTGTGTCGTATCACCTGCAGAGGGCGCTGCCGGGAGGAATCGTGCTGATGGAGCTGGCCTTTCAGGTAAGAGCTTCATCTTCTGTCTTCAGAgcagagtttttatttttcaggCCTCAGAATCAGCACACAGCAGACACTGGGCTTTTACAACAACACTGAACGTCTCGGCAGACACAGAGGAGAAAGAGAGATGCTTAATGGAGTCTGCCTCGCTCGCGCACTATTTATGCTTATTAATATTTGAACACACAGAATCAACAGCGAGGAAACAACATGCCATCTGATCTCCAGCCTTCCTCACGCCTCACATCTCTCACAATTCACTTTCAGAGTGTTTTGAAGATATTGTTATTACGGCTGTCAAAATAATTCATTAAGACctgataataatcatcatcatcaatattaataatgatttgcttatttatgaataataaatctatttatatCAATCGTGTCAtcatttagaattattattaattttgttattcTTATACTTGTTATTAATagtagcagtaataataatagtaatagcaataaaaaaatgtaatattgttgTAATTATAATTCATACTTTATTGAA
>TCONS_00062237
GGTGCGTGTGGAGACTCACAGCAGCTTCAGCATGCGGTCAGAGATGATGAAAACACACGAGCGGCGGCTCCAGACTCTGCCAGCGAGTCTCTCTCTGAAACCTCAGACAGTGGATTGGTGAAGCAGAGCGATGTGGAGGATCCTCCAGCTCACCTGCAGACggccagcagcactgaacacaccACTCCTCCAAAAACACCCTCTGCTGCCAGCCTGGCCGAGTCTGTGCAGTCCAACACACACAGCAGTGGGAAGCTGCGGCCCAGTCGAGTTCAGAGTGTGGTGTCCAGTCAGGGCAGCCTGGACTCAGACATGCTGGGTGAGACTCCACTGATTATGCGCACACTCGCTCACGCACTCATCTGTCCTCCTGCATCAACTCTCctcctgcatgtgtgtgtttttcaggttACGACGGTGGCAGCAGCGACTCGGAGTGTGAAGGACCCACGATGAACGAGCAGGAGAAGCAGACGCCGCTCATGCCTGATTTCTGGCTCATCATCAGGATCCATCAGGACCGGGTGCAGGTTTTCTCTCACTCCagGAGTTTGCATCGAGGgaaagaggaggaagaggaggaggagatcCCCGAATACCTGCGCCTTCATCAGCTGGTGGTGCGCAGGATTGGAGAAATGTGCCGAATAGTCAACCAGCGCCTCCTGCTGCAGGATCTGCATGACAGTCGTGTGTGCCACTCTCTCCTGGTGGCGGAGAGTGAGGAGGACATCTGGAAACATGAGTCGCTCTACCGGCCCCGGATGACCCACTCTGATGaCTATAATGCTGACGAGAGCTATCAGCGGCGGGATTACCTCGCCGCCACCATGCACTTCATACCGGGTTACTTCGCCTGTGACGTGGTGTGGAGCACCGTTATTTACATCCACCCGCGGCTCAAGATGGGGCCCAACATGGGTGTGTCCCGCGCTATGCAGGCTCTGCACTCCGTTCTCAACGCTTTCTGTGTGGTGAACCGCAAAAACATGTTTGTCTATCAGGAGCGCACCACTAAATCTGTGTTCTACCTCCGGCTCTCCGAGACGTCTCAGGCAGGGAAGTACAGTGATTTGGATGGAAACGTGCACATGTCGCGCTCTGTCGGTCTGGCTCGCAGCCAGGAGCCGCTAGGCTCAGAGGACCTCACGGGATCGCGCTCGTCTCTGGAAGGCTCGAGGCCAGTTGGACTGGTGGACAAACACATTCTGCTGCTAGTTCATGGTGTAGGAACTGCAGGTCCAGAGATCTCGGATGAGCTGATGAAGCTCTTGAGGAAGCGTCTGGATGAAGCCACACTGGACATTATTACAGTCATGCTGGTCAGAAACTGCAAACTGACCCCTGCAGATGTGGAGTTTATCCAGCCTCCCGGGTCTCCAGCGACGGAGGTGATGGAGTTCTGTCTGCCTCAGTACTGTGGGCCGTGGATCCAGGCGGTGGCTCACTATCTCCGGCAGAACCTGCTCATTTTTCTCCACATCCCCAAATACACTGACAGCAACATCGAGCACCACTTTAAGCATTATTTCCATTCAAGTAGCGAGCTGCCCGATCATGACATCTACCTGTACAATAAACCTGGAGGACAGGGCACCGGAGGCAAAGGTATCGTCTGCATCGTGCTGTCGTTCGTGGATGATAAAGGCTGTGCGCTGTTGCTTACTGCTCAGGACGCCAGTGTTTCGGCTGTAAGAGGAGATGCCACCGCCATTTCCATCCAGCCGGACCAGTTTGAGACCTTGACAACCGTTGTCAAGGTGGACTCTCGCAACCAGAGCTCAGGTGTTCGCGTGCGCTTTGACGTGTGGGAGCAGGGGAACATCGATCCTCTACAGCTGGCAAACAGACTGAAAGCTGCTCTACGCCACGCTCTCTGTGATGTTATTATGGAGATGCGTGTACTGCCCAGTCCACTGTGTCTGGACACCTTCTGCCTGCCCACTGCCACCCCGCGGGAGGAGAGCTCAGTTCCCTTAAGTCTTGTGCCGTCAGACAGTAAGGAGCAGAAGAAGACTCCTCGGCGTCCCAGCACAGATCAAGCTCTCAGAAGCAGCCCGTCTCCCATCAGCCTGATCTCTGCACCCGCTTCCACCCCGACCACAGGAACCAGCACTCCCGAATCCACAACACCCACCGGGAAAAGCACTCGCCGCAGCTTCTGGGAGATGCTGAGCAAACCAGAGACTTCTGAAATTGGCAGTCCGAAGACAACGGATGATATTATACCGGAGCGAGCGGAGGATAGTCGGATGGGAAGACGCAGACACAAGACGGAGAACGTCAAACAGTGGAGCCATGAGAAAGCCATGGCTGTGGAACAAGAGCAGGCtcagagGAGACGTGCGGTTCAGTTGGAGGAAGGAGATACGGGGACTCTTCAGCCTGTTTACCAGACCACATACATGCCCTGGGTCATGTTCATGAATAAACTGGGTTGTCCGTCCATCCAGCACTGTTCAGCTGAAGTCTCGCATCACTTCCTCCTGCCCTCCGTCCTCACAGAGTTGGTCAATCTGGTCACTTCTCTGGCCAGTGACACCACAGTCAAAGTATTCGAAAGAAGCAGCTGCCCTCAGGGAGATATTTACATACCTCTGTCAATCATCCAGCACATCAGCCAATCACCTGCCACCACCAGGAGCTTCATTCTCATTGGTCGCAACTTCAGCCAGTGGCATTGCAGTACTGAGCAAGCTCATAAAGGCCTGCAGCGGTTCGAGGCTTTGGAGCACAGTGATTGGCTGAGCCCGGGTCAGGCTGTGAGGGGCGTGGCTCCACGACAGCGTTTCCTGTTCATTCACATCGTCAACAAGAAGGTGACTCTGTACACGTATAACTGGTCAGTGGATCTGGGCGGCTCTCTGAATCAGGCTCTGGTTAGGCTGGTGCAGTGGCAGAACGCTCGCGCACACGTGGTCAACTGCCTCCTGGGTCAGAAAATGGGCCTTTTCCATCATTACTGCTTCTCTGATACGCCTACACACGAGGAGCTGAAGCAGGAGCAAAACCCATTCCTGAACTCCACGATGGAGGCAGACGCTCTATTAAGGAGTCCGGTTCCTCCGGCCGCCAGTAAGGATCCGGGTCGACTAGGCAGCTCTGCGCGTGTTCTTCCTCCTCTGCCATTTCCTGGTGAACTCGTGCCCTTTGATGAAGCTCTGAGAGACGTCAACACTAACAGACCCCTGAGCAGTCAGGACGGGGCTGATATAGTGGCTCGACACGGAGCCCAGCTGCTGGAGGTCAAAGCAGCTGAACGCAgagAGTTGGAGAGACAGATGAAGATCGAGAATCTGTTTGTGACGTGGCAGCAGCGCTCGGCTCAGTCCAACATGCCCATATCGgtggCAGATCTGGACACTCTAAAGCAATCCTCTAGACTGGTTCATTACTGCGCCACACCACTGCTCTTTGACCCTGTGTTCAGAAAACAGATTCAGGAGGAACAGGTGCCACAGCCACAGATGAAGAAGCGTCATCGCTCCAGTGACTCGACAGCCTCGGGCCGGGACCGCAGCTACAGCACAGACTCTGCAGAGATGCTGCCGAGCCGGCTGAAGGAGGAGCCGTGGCTGCAGGACATCTCCAACACCTTCCTGCAGCAGTACGTGCAGTATCTGCAGAGCATGGGCTTCATCCTGGTGCAGGTCCGGCCGCAGTCGCCAGCACGCAGCATCGCTCGAGCTCGCGCCGCCATGTTGAGCTCTCTGTCCACTGAAGGCAGATCTTCATTCTCATCGTTCTCATATAATAAGCAGAAGAGTGAAGACAGCAGCCCTAAGcagagCAGTTCGTCAGGCTCTGTGTCGTATCACCTGCAGAGGGCGCTGCCGGGAGGAATCGTGCTGATGGAGCTGGCCTTTCAGGTAAGAGCTTCATCTTCTGTCTTCAGAgcagagtttttatttttcaggCCTCAGAATCAGCACACAGCAGACACTGGGCTTTTACAACAACACTGAACGTCTCGGCAGACACAGAGGAGAAAGAGAGATGCTTAATGGAGTCTGCCTCGCTCGCGCACTATTTATGCTTATTAATATTTGAACACACAGAATCAACAGCGAGGAAACAACATGCCATCTGATCTCCAGCCTTCCTCACGCCTCACATCTCTCACAATTCACTTTCAGAGTGTTTTGAAGATATTGTTATTACGGCTGTCAAAATAATTCATTAAGACctgataataatcatcatcatcaatattaataatgatttgcttatttatgaataataaatctatttatatCAATCGTGTCAtcatttagaattattattaattttgttattcTTATACTTGTTATTAATagtagcagtaataataatagtaatagcaataaaaaaatgtaatattgttgTAATTATAATTCATACTTTATTGAA
>TCONS_00062239
ATGCTGGgttACGACGGTGGCAGCAGCGACTCGGAGTGTGAAGGACCCACGATGAACGAGCAGGAGAAGCAGACGCCGCTCATGCCTGATTTCTGGCTCATCATCAGGATCCATCAGGACCGGGTGCAGGTTTTCTCTCACTCCagGAGTTTGCATCGAGGgaaagaggaggaagaggaggaggagatcCCCGAATACCTGCGCCTTCATCAGCTGGTGGTGCGCAGGATTGGAGAAATGTGCCGAATAGTCAACCAGCGCCTCCTGCTGCAGGATCTGCATGACAGTCGTGTGTGCCACTCTCTCCTGGTGGCGGAGAGTGAGGAGGACATCTGGAAACATGAGTCGCTCTACCGGCCCCGGATGACCCACTCTGATGaCTATAATGCTGACGAGAGCTATCAGCGGCGGGATTACCTCGCCGCCACCATGCACTTCATACCGGGTTACTTCGCCTGTGACGTGGTGTGGAGCACCGTTATTTACATCCACCCGCGGCTCAAGATGGGGCCCAACATGGGTGTGTCCCGCGCTATGCAGGCTCTGCACTCCGTTCTCAACGCTTTCTGTGTGGTGAACCGCAAAAACATGTTTGTCTATCAGGAGCGCACCACTAAATCTGTGTTCTACCTCCGGCTCTCCGAGACGTCTCAGGCAGGGAAGTACAGTGATTTGGATGGAAACGTGCACATGTCGCGCTCTGTCGGTCTGGCTCGCAGCCAGGAGCCGCTAGGCTCAGAGGACCTCACGGGATCGCGCTCGTCTCTGGAAGGCTCGAGGCCAGTTGGACTGGTGGACAAACACATTCTGCTGCTAGTTCATGGTGTAGGAACTGCAGGTCCAGAGATCTCGGATGAGCTGATGAAGCTCTTGAGGAAGCGTCTGGATGAAGCCACACTGGACATTATTACAGTCATGCTGGTCAGAAACTGCAAACTGACCCCTGCAGATGTGGAGTTTATCCAGCCTCCCGGGTCTCCAGCGACGGAGGTGATGGAGTTCTGTCTGCCTCAGTACTGTGGGCCGTGGATCCAGGCGGTGGCTCACTATCTCCGGCAGAACCTGCTCATTTTTCTCCACATCCCCAAATACACTGACAGCAACATCGAGCACCACTTTAAGCATTATTTCCATTCAAGTAGCGAGCTGCCCGATCATGACATCTACCTGTACAATAAACCTGGAGGACAGGGCACCGGAGGCAAAGGTACAATGTCGGACCTTGTTCAGAATCTTTTCCCAACCTCTCAGTTTCAAGGTATAAAAGGCCCTCCGCACTTCACTGCTATGCTGCAGCGCCCCCATGCACTGGCTGTGTGTGCTAATGCATGGTCATGTGTCAGCTTAAAATGATTGTGCaccataaaataatttttttttttgtttttttgttttagagaaCTTACTGCATTGGGTTTGTTTCAGTACAGATTGtgtgtttaattaataaattattgcatttatattattataatagttttggatgcattatttattcatatatgtaTTCAGCAAGAATGCATTGCATTCAATCAGAGGCAGCAgtaaagactttttaaataaaagacatttttaataaatgtaattcagcTTTCATTCATAGACATAAGTTgcaaaatagaaaatatatatttatttaatccccccccccaaaaaaaaataaataaaaacagcactaGTGAACATTGTagactttcattaaaatatttaaaatatatttaaatcctCCCCAATCAATACAGCTATAGTAAAC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117550

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062238 False 4437 lncRNA 0.53 27 2519973 2593500
TCONS_00062237 False 4389 lncRNA 0.53 26 2519973 2593500
TCONS_00062239 True 1753 lncRNA 0.48 12 2522220 2550162

Neighbor

gene id symbol gene type direction distance location
XLOC_031769 LO017858.1 coding upstream 13521 2491733 ~ 2506452 (+)
XLOC_031768 CABZ01056637.1 coding upstream 55925 2457455 ~ 2464048 (+)
XLOC_031767 pbx1b coding upstream 124960 2271559 ~ 2395013 (+)
XLOC_031766 CU638693.1 coding upstream 277289 2235893 ~ 2242684 (+)
XLOC_031765 CU638693.2 coding upstream 287429 2227632 ~ 2232544 (+)
XLOC_031771 NA coding downstream 23889 2617389 ~ 2620338 (+)
XLOC_031772 ptprfa coding downstream 358145 2951645 ~ 3276052 (+)
XLOC_031773 BX255959.1 coding downstream 572108 3165608 ~ 3165722 (+)
XLOC_031774 kdm4aa coding downstream 687439 3280939 ~ 3319142 (+)
XLOC_031775 st3gal3a coding downstream 740892 3334392 ~ 3405495 (+)
XLOC_031764 CU638693.3 non-coding upstream 292630 2222764 ~ 2227343 (+)
XLOC_031760 NA non-coding upstream 688494 1825214 ~ 1831479 (+)
XLOC_031776 NA non-coding downstream 826276 3419776 ~ 3422733 (+)
XLOC_031780 NA non-coding downstream 981551 3575051 ~ 3581291 (+)
XLOC_031787 NA non-coding downstream 1222549 3816049 ~ 3826125 (+)

Expression


Co-expression Network