XLOC_031771


Basic Information

Item Value
gene id XLOC_031771
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 2617389 ~ 2620338 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064598
agcattttttgcagtgtaaccaGTGTTATGAATCTAAAGATGAACACATCCAGTCAtgttcttgttttaagaaataatgtcaaGATTACTGCGagttccttaaaacaagctaaataatcttatgTCTAAAGGCAAaaccaagattattttgcttattttaaggaaaactTACTTATTATTTCTAAGAATAAGACCATcgtttttttttgcttgtctacaaaatgcttttaaggatttttacattaaaaacaagacaaaaaaaaatctaagtaagaaaaactTAGTGTCgtcctgttttcagaaatataaaGTCATAATGAAGTGAGTTTCTCATTAAAACAagctcaataatctgccaatgtaaTAAGCAAAATAGctttattacaaagtaaaaacaaaattactACTTATTtcccctattggcagattattgagctTGTTTGATGGAAAAACTTCATTCTGACTTCTTAAAACCAGACCATATTTTTGCTTGTTGAtttaaatatagatatatttGTGCTAGatacaagacaaaaactttaaataagaaaagTTAAAAGGAGACTGAGATCTGAAGCAGTCTCGTGTGTGTTCAGTCGTCACATTTAGTCCTCATTCAGTGCTGTGAATGATCCACTTGTTGGTTTTGGTGAGGACTAGACTGGTTTTGCCATTGAGGTAGTCCTTCTGTCTGCTCTTTTCCTCCATCTCTCAGAAGATGATGCTTTAGATTTGTCTTACATGTCCAGTGTTTTCCCACAAACCACCTGCTGATATTTTTTTTGCCCCATAATGCACCACGTACACTGCAAAAATGTGTATTACttcaagtttttgtcttgtttctattccaGATATCTAAAAATCCCTTAATAAAGAAGCATTTGCTAGACAAGCAGAAAATACtgtgttgtttttagaaataataggtcaaaatgaagtgagtttttccttcaaacaagctcaataatctgccaataggggaAATAAgtaataatcttgtttttacttAGTAATAAAGTGGTTTTGCTGACCACATTGGCAGAttgtttagcttattttaaggaaaaactcacttcattttgactttgtatttctgaaaacaagacgacacttaaaaaaaaaaaatgattttcttgtcttatttttagtccaaatatacAGGCAAAAAATTGACTTGTGTTCAGaaatattaagtcaaaattaagtgatttttttccttaaaacaagcaaaataatcatgtttttgaTTTTTTGACTCGTTATTCCTGAAAACAAGATTTTTTGGAtgtctaaaaatgcttcttgatttttctagataagaaaaaaatgttttgtttccAGAATTATTAAGTTAAAACGgtgtgtttttccttaaaacaagcaaaataatctgccgatagaaaaaattctaaataatctCATATCAAAGGGAAAAagaagattatttagcttactcCACTGgtaaaataaatagttgttataggTTTGGAATAAGattaaaatacttaattttaaaatatttattaaataatatatatataagatctATATTCTATAATCTATCTATAATCTTATATTAGTATTAACATTACTTTTCCTCACCCCACTGCAGATTActgagcttgttttaaggaaaaactcgcttCATTTCATCTcagtatttctgaaaacaaaaaaatatatattttatcctAAAATGCTTCTGGAGTTGaacttttttagatatttggactagaatcaaAAGAAaaccatttttacatttactttgttgttgttgttgcagtgtATTAGTTTTCACTGCCATTCTATCATCTCAAAAGTGCCTTTATCTTTATTTTCCTTGAACTAGTTGTTCACACTGGACACACGGGCATCATGGGAAACCCTTGACGCATGAAGGAAACCATTGAAACtctttaaatgacagaaattgaggaatgttttactgttttgtttCTTTAAAGCACACTGGATGTTTTTCAACAGTAGTTAGTAATCTGTACATTATGTATATAGAGGCGGATTTGTAAGAAACAAATGCTTAACAATAAATCTTAAATTAAACCTCTGACGTCATGTTTCTGAAATGAGAGAAATTAAGTGCTGAAAAGCATGCGGAGGTGAAAGATTATTCCAGTGAGTGAAACTGACGGTTCATTTGAAGCATATTTTAATCTTGTGTGGCCTTTTAGAGCTGATTTAGTCACGTTCTCCTCCATTTCGGCTTCTCCAGTATTTTCGGAGCCACTCCAGACCGGCTTCAGTCGAACCTGGACAATAATATTCACAAATATAAATCAGCAGAAACTCAATTTTCACAATCCTCTGTGTAGCTAATGAACAGCAAAGCCTGGAAATGAAGCC

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016071 mRNA metabolic process biological_process
GO:0006325 chromatin organization biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0006338 chromatin remodeling biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0008152 metabolic process biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0000380 alternative mRNA splicing, via spliceosome biological_process
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0006396 RNA processing biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0006397 mRNA processing biological_process
GO:0006403 RNA localization biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0009891 positive regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0031328 positive regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1902680 positive regulation of RNA biosynthetic process biological_process
GO:0050684 regulation of mRNA processing biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0051254 positive regulation of RNA metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:1903508 positive regulation of nucleic acid-templated transcription biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0051276 chromosome organization biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0048024 regulation of mRNA splicing, via spliceosome biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:1903311 regulation of mRNA metabolic process biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0045292 mRNA cis splicing, via spliceosome biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0045935 positive regulation of nucleobase-containing compound metabolic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0010557 positive regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0008380 RNA splicing biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0016604 nuclear body cellular_component
GO:0016607 nuclear speck cellular_component
GO:0000228 nuclear chromosome cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0042393 histone binding molecular_function
GO:0005488 binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003727 single-stranded RNA binding molecular_function
GO:0003729 mRNA binding molecular_function
GO:0030623 U5 snRNA binding molecular_function
GO:0036002 pre-mRNA binding molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064598 True 2367 lncRNA 0.31 2 2617389 2620338

Neighbor

gene id symbol gene type direction distance location
XLOC_031770 LO018168.1 coding upstream 23889 2519973 ~ 2593500 (+)
XLOC_031769 LO017858.1 coding upstream 110937 2491733 ~ 2506452 (+)
XLOC_031768 CABZ01056637.1 coding upstream 153341 2457455 ~ 2464048 (+)
XLOC_031767 pbx1b coding upstream 222376 2271559 ~ 2395013 (+)
XLOC_031766 CU638693.1 coding upstream 374705 2235893 ~ 2242684 (+)
XLOC_031772 ptprfa coding downstream 331307 2951645 ~ 3276052 (+)
XLOC_031773 BX255959.1 coding downstream 545270 3165608 ~ 3165722 (+)
XLOC_031774 kdm4aa coding downstream 660601 3280939 ~ 3319142 (+)
XLOC_031775 st3gal3a coding downstream 714054 3334392 ~ 3405495 (+)
XLOC_031776 NA coding downstream 799438 3419776 ~ 3422733 (+)
XLOC_031765 CU638693.2 non-coding upstream 384845 2227632 ~ 2232544 (+)
XLOC_031764 CU638693.3 non-coding upstream 390046 2222764 ~ 2227343 (+)
XLOC_031780 NA non-coding downstream 954713 3575051 ~ 3581291 (+)
XLOC_031787 NA non-coding downstream 1195711 3816049 ~ 3826125 (+)
XLOC_031790 NA non-coding downstream 1257334 3877672 ~ 3879215 (+)

Expression


Co-expression Network