G1259194


Basic Information

Item Value
gene id G1259194
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 12719005 ~ 12720732 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1438541
TCTTCAATTTATTAACACAGCCAAATAAACAATGCAcacaatgtaaaaacaaaaatcaCATCCCTTCATTCCCCCCCACCACTATTCCATGTTTCCCCACTGTCTCAGGTCACTGGGTATTGTAGTTCTGTAGTTGTATCACACCTCCAGAGGTTCAGCCGCCCACAATGATGTTGTTGATGGGGATGTGGATGAGCTTGACAAAGAACCCAATGAAGCCCATGATGGCAAACCCAATCGCTGTTGCCATGGCGATCTTCTGGAATTCTTTCCTGTCTGGTTTGGTGCACCTCTTAACGAGCCTTATGGAGTCCTTGACGAACTGCCGACTGGGCTCAACGAACTGCATAACCTGGTCCATGATGGTTCGTCTGGGGAGCAAACAAGTCCGACAGACAAGGGTTAGTTAGCTAGCTCCATCAAAGTGTCACTAGCTACACGTCTCTTCATCCCTCACCATTTCCTATGTATAATAAAGGGTTCAGTTACGGTTCTGTCCATAAATTCTTAAACATTTAGGCCTGGCTTATAATGTGTTAGCTGAGGTTCTGGTCCATTTTCTGTGTGGGTGCACGAATAAACCTGATActgtagctaacgttaactagctagttagctacatgaGGTAGTTAACTGGTGTCGATGGCAACCATAGACTAAGAAGATTTCACAACGAAACACTAGGTTGAGCAATCAAGACAGACATTGCTTTCTAATTTCAACGTCAACGTTGCACTGAACGCCTCAAGATTGTTTGGTTATTTACCAG

Function

NR:

description
protein transport protein Sec61 subunit gamma

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1438541 True 769 lncRNA 0.44 3 12719005 12720732

Neighbor

gene id symbol gene type direction distance location
LOC110489593 LOC106590549 coding downstream 185562 12507315 ~ 12533443 (-)
LOC118938787 NA coding downstream 689589 12025555 ~ 12029416 (-)
LOC110489583 LOC106590573 coding downstream 1161534 11539629 ~ 11557471 (-)
ropn1l ropn1l coding downstream 1193393 11509626 ~ 11525612 (-)
LOC110490908 LOC106590575 coding downstream 1220556 11469774 ~ 11498449 (-)
LOC118938943 NA coding upstream 69 12720801 ~ 12784079 (-)
LOC110489587 NA coding upstream 41680 12762412 ~ 12769791 (-)
LOC110489601 LOC106590561 coding upstream 431642 13152176 ~ 13163864 (-)
LOC110489602 LOC106590560 coding upstream 449616 13170348 ~ 13176530 (-)
LOC110490823 NA coding upstream 474993 13195725 ~ 13201088 (-)
G1259190 NA non-coding downstream 49292 12667796 ~ 12669713 (-)
G1259192 NA non-coding downstream 77495 12641009 ~ 12641510 (-)
G1259183 NA non-coding downstream 84702 12633603 ~ 12634303 (-)
G1259162 NA non-coding downstream 121390 12590052 ~ 12597615 (-)
G1259142 NA non-coding downstream 176339 12542350 ~ 12542666 (-)
G1259235 NA non-coding upstream 3014 12723746 ~ 12724038 (-)
G1259238 NA non-coding upstream 17348 12738080 ~ 12738480 (-)
G1259239 NA non-coding upstream 18400 12739132 ~ 12739446 (-)
G1259240 NA non-coding upstream 19400 12740132 ~ 12740341 (-)
G1259256 NA non-coding upstream 40484 12761216 ~ 12761440 (-)
G1257642 NA other downstream 1900094 10818443 ~ 10818911 (-)
LOC110489570 LOC106590600 other downstream 2423015 10256343 ~ 10296042 (-)
G1256654 NA other downstream 2844263 9873519 ~ 9874742 (-)
G1256146 NA other downstream 3240187 9477813 ~ 9478818 (-)
LOC110489604 mllt10 other upstream 621321 13288725 ~ 13369504 (-)
G1260199 NA other upstream 665657 13386389 ~ 13387587 (-)
G1260226 LOC106590529 other upstream 742133 13462865 ~ 13505161 (-)
G1260265 NA other upstream 816338 13537070 ~ 13538208 (-)
msl2b LOC106590518 other upstream 987281 13708013 ~ 13716136 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G104029 NA non-coding CI01000018 null 2905929 ~ 2908824 (-)
rainbow trout (Oncorhynchus mykiss) G105065 NA non-coding NC_048566.1 CM023220.2 1662553 ~ 1663100 (+)
eurasian perch (Perca fluviatilis) sec61g NA misc NC_053133.1 CM020930.1 12516299 ~ 12518308 (+)
mexican tetra (Astyanax mexicanus) G218706 NA non-coding NC_035921.1 CM008324.1 23822483 ~ 23824595 (-)