G1259648


Basic Information

Item Value
gene id G1259648
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 13060610 ~ 13115271 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1439070
GAATGGATATTGATAGATATTGACAGAATGTTAAAGTTGGAGCAAAATGTTACTGAAGcaaatacatcaaatcaaatcaaattgtatttgtcacatacacatggttagcagatgttaatgcgagtgtagcgaaatgcttgtgcttctagttccgacaatgcagtaataaccaacaagtaatctaactaacaattccaaaactactgtcttgtacacagtgtaaggggataaagaatatgtacagtgccttgcgaaagtattcggcccccccGAACCCCGCGACCCCCTGCCACATCTCAGGCCCCAAACACAAAGACACAAAACCgtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgc
>TU1439072
GAATGGATATTGATAGATATTGACAGAATGTTAAAGTTGGAGCAAAATGTTACTGAAGcaaatacatcaaatcaaatcaaattgtatttgtcacatacacatggttagcagatgttaatgcgagtgtagcgaaatgcttgtgcttctagttccgacaatgcagtaataaccaacaagtaatctaactaacaattccaaaactactgtcttgtacacagtgtaaggggataaagaatatgtacagtgccttgcgaaagtattcggcccccccGAACCCCGCGACCCCCTGCCACATCTCAGGCCCCAAACACAAAGACACAAAACtgtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgc
>TU1439071
GAATGGATATTGATAGATATTGACAGAATGTTAAAGTTGGAGCAAAATGTTACTGAAGcaaatacatcaaatcaaatcaaattgtatttgtcacatacacatggttagcagatgttaatgcgagtgtagcgaaatgcttgtgcttctagttccgacaatgcagtaataaccaacaagtaatctaactaacaattccaaaactactgtcttgtacacagtgtaaggggataaagaatatgtacagtgccttgcgaaagtattcggcccccccGAACCCCGCGACCCCCTGCCACATCTCAGGCCCCAAACACAAAGACACAAAACtgtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgagatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgcaaaattattcagcccctttacattcagtgcagcaaacagcccctttactttcagtgcagcaaactccaatgttgacctaaatgactaatga

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1439070 False 438 lncRNA 0.38 2 13060610 13115271
TU1439072 False 438 lncRNA 0.38 2 13060610 13115271
TU1439071 True 529 lncRNA 0.38 2 13087787 13115271

Neighbor

gene id symbol gene type direction distance location
LOC118938943 NA coding downstream 276531 12720801 ~ 12784079 (-)
LOC110489587 NA coding downstream 290819 12762412 ~ 12769791 (-)
LOC110489593 LOC106590549 coding downstream 527167 12507315 ~ 12533443 (-)
LOC118938787 NA coding downstream 1031194 12025555 ~ 12029416 (-)
LOC110489583 LOC106590573 coding downstream 1503139 11539629 ~ 11557471 (-)
LOC110489601 LOC106590561 coding upstream 37103 13152176 ~ 13163864 (-)
LOC110489602 LOC106590560 coding upstream 55077 13170348 ~ 13176530 (-)
LOC110490823 NA coding upstream 80454 13195725 ~ 13201088 (-)
LOC110490912 spag6 coding upstream 87934 13203205 ~ 13213651 (-)
LOC110489603 bmi1a coding upstream 104080 13219351 ~ 13227413 (-)
G1259620 NA non-coding downstream 36706 13023360 ~ 13023904 (-)
G1259607 NA non-coding downstream 91099 12968100 ~ 12969511 (-)
G1259602 NA non-coding downstream 103548 12954544 ~ 12957062 (-)
G1259529 NA non-coding downstream 141862 12814223 ~ 12918748 (-)
G1259680 NA non-coding upstream 2381 13117652 ~ 13122549 (-)
G1259687 NA non-coding upstream 22767 13138038 ~ 13138274 (-)
G1259709 NA non-coding upstream 77290 13192561 ~ 13192782 (-)
G1259721 NA non-coding upstream 118422 13233693 ~ 13234203 (-)
G1257642 NA other downstream 2241699 10818443 ~ 10818911 (-)
LOC110489570 LOC106590600 other downstream 2764620 10256343 ~ 10296042 (-)
G1256654 NA other downstream 3185868 9873519 ~ 9874742 (-)
G1256146 NA other downstream 3581792 9477813 ~ 9478818 (-)
LOC110489604 mllt10 other upstream 226782 13288725 ~ 13369504 (-)
G1260199 NA other upstream 271118 13386389 ~ 13387587 (-)
G1260226 LOC106590529 other upstream 347594 13462865 ~ 13505161 (-)
G1260265 NA other upstream 421799 13537070 ~ 13538208 (-)
msl2b LOC106590518 other upstream 592742 13708013 ~ 13716136 (-)

Expression


Co-expression Network