G1259784 (LOC106578380)


Basic Information

Item Value
gene id G1259784
gene name LOC106578380
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 13406282 ~ 13407325 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1439240
TCGTTGCTCTTGATGGCATAGACGTCTATGGTGGGGTCAAACTCCCCAGGGGACAGGGGCTTGGTGCTGTCCAGGGTGTTACTGGGGGAGTCAGGGGGAGTGCCAATCCCTCCGTCACTCTCCCCCTCATCGTCCCCCTCGTTATCCtcactctccacctcctcctgctcAGCCCGCTCCACATCATGGATCCCCACCAGCAGACTGTAGTCCATCAGCTTCAACTGGGCCAGGAACTGGAGGGAGGGAAATAACATGTGTTGAGGGAGACCGGATTAATCCAGACCCAAGTATTAATTCACTCACATCAGAATAAAtaacagaaccacacacacacacacacctccacgtCTTTACGTAGCTTCTCCAGGAACATCTTCTTGTTGTCGTCGTCGATGCAGATCTTCTGTCCATCGTTGATGAAGTCGTTGTCCTTGTAGGTGGGCAGCTCCTTGGCCTGAAGccccacacagaaacacagtcaGGACAGCAGAGGACACACCTGGACTCTACAGCTATTCACACTAATAAGGAAAAGTACCAGGGTTTACACTCTTTAAAATGACCCTCTGACTCATTGAATAAATTGACATGAATCCTGTTTTTCTGTGACACCCTCAGTTTGAAACAGACAGTGGGAGCTCTATGGGGCTTGTGAGTTTCCATTGGGCCATCTGGCTGCAATACCATGTGTGACATGGGGTCTGGGGGCGCTTGTGTGTAAAGTGAGGCATTATTCTGTGGAACTGAGGAAGGAGTGAGCAGGAAATGAGGTCACAGCAGCAGCTCAGCTCAGGGAGCTGACAGAAGCAATACTACAGCAGCACCAGGAAATGAGGTCACAGCAGCAGCTCAGCTCAGGGAGCTGACAGAAGCAATACTACAGCGGCACCAGGAAATGAGGTCACAGCAGC

Function

NR:

description
LOW QUALITY PROTEIN: phosphatidylinositol 5-phosphate 4-kinase type-2 alpha-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1439240 True 914 lncRNA 0.52 2 13406282 13407325

Neighbor

gene id symbol gene type direction distance location
LOC110489606 skida1 coding upstream 25925 13374081 ~ 13380357 (+)
LOC110489600 LOC106590541 coding upstream 262259 13140028 ~ 13144023 (+)
LOC110515947 LOC106578389 coding upstream 283731 12835920 ~ 13122551 (+)
sec61g NA coding upstream 685541 12718578 ~ 12720741 (+)
LOC110489589 LOC106590556 coding upstream 736554 12645767 ~ 12669728 (+)
armc3 armc3 coding downstream 51884 13459209 ~ 13480871 (+)
LOC100135934 LOC106590529 coding downstream 89010 13496335 ~ 13505165 (+)
LOC110489613 LOC106590529 coding downstream 107474 13514799 ~ 13517938 (+)
si:ch211-230g15.5 LOC106590521 coding downstream 125277 13532602 ~ 13551953 (+)
LOC110489618 LOC106590519 coding downstream 291952 13699277 ~ 13709450 (+)
G1259783 NA non-coding upstream 1113 13401651 ~ 13405169 (+)
G1259738 NA non-coding upstream 146843 13259036 ~ 13259439 (+)
G1259731 NA non-coding upstream 159255 13246693 ~ 13247027 (+)
G1259478 bmi1a non-coding upstream 186459 13218363 ~ 13219823 (+)
G1259469 NA non-coding upstream 230423 13165171 ~ 13175859 (+)
G1259831 NA non-coding downstream 75357 13482682 ~ 13492227 (+)
G1259854 NA non-coding downstream 115691 13523016 ~ 13524334 (+)
G1259861 NA non-coding downstream 124049 13531374 ~ 13531617 (+)
G1259864 NA non-coding downstream 128499 13535824 ~ 13536234 (+)
G1259481 NA other upstream 221715 13184293 ~ 13184567 (+)
LOC110489591 LOC106592044 other upstream 766817 12562131 ~ 12639556 (+)
G1258375 NA other upstream 1500764 11905086 ~ 11905518 (+)
G1257945 NA other upstream 1942794 11461992 ~ 11463488 (+)
LOC110490824 LOC106590516 other downstream 339342 13746336 ~ 13758266 (+)
G1260013 NA other downstream 461990 13869315 ~ 13870230 (+)
G1260074 NA other downstream 554176 13961501 ~ 13961816 (+)
LOC110489635 LOC106590481 other downstream 803040 14186442 ~ 14217437 (+)

Expression


Co-expression Network